mRNA_Ecto-sp13_S_contig8722.20187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8722.20187.1
Unique NamemRNA_Ecto-sp13_S_contig8722.20187.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8722.20187.1 vs. uniprot
Match: D7FH67_ECTSI (Hemerythrin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH67_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 9.140e-86
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 1 
Query:    1 MFVHGKFRSSATSVVQAAESMQSGVEGGCSSTKTESAVGKIERSLRSLLGKVAKHSDFEDSQLFRFFKENLPDLEGQIRDLEADHSETQLGNDALDRIRNLRSAPTTAGAVSGGADVASAQAVVIALKAYAESLESHLEREERVLV 438
            MFVHGKFRSSATS+VQAAESMQSGVEGGCSSTKTESAVGKIERSLRSLLGKVAKHSDFED+QLF FFKENLPDLEGQIRDLEADHSET LGNDALDRIRNLRSAPTTAGAVSGGADVASAQAVV+ALKAYAESLE HLEREERVLV
Sbjct:    1 MFVHGKFRSSATSIVQAAESMQSGVEGGCSSTKTESAVGKIERSLRSLLGKVAKHSDFEDAQLFLFFKENLPDLEGQIRDLEADHSETNLGNDALDRIRNLRSAPTTAGAVSGGADVASAQAVVVALKAYAESLEIHLEREERVLV 146
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BLAST of mRNA_Ecto-sp13_S_contig8722.20187.1 vs. uniprot
Match: A0A6H5JCA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA2_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 6.100e-31
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:  229 QIRDLEADHSETQLGNDALDRIRNLRSAPTTAGAVSGGADVASAQAVVIALKAYAESLESHLEREERVLV 438
            ++ DLEADHSET LGN+ALDR+RNLRSAPTTAGAVSGGADVASAQAVV+ALKAYAESLE HLEREERVLV
Sbjct:    3 RVLDLEADHSETNLGNEALDRVRNLRSAPTTAGAVSGGADVASAQAVVVALKAYAESLEIHLEREERVLV 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8722.20187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH67_ECTSI9.140e-8695.89Hemerythrin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JCA2_9PHAE6.100e-3188.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8722contigEcto-sp13_S_contig8722:4119..6679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score262.7
Seed ortholog evalue1e-67
Seed eggNOG ortholog2880.D7FH67
Model size438
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Hemerythrin HHE cation binding domain
EggNOG OGs2D5TW@1,2SZNI@2759
Ec32 ortholog descriptionHaemerythrin/HHE cation-binding motif
Ec32 orthologEc-13_000960.1
Cds size438
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.0555067-CDS-Ecto-sp13_S_contig8722:4118..42001681464145.0555067-CDS-Ecto-sp13_S_contig8722:4118..4200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8722 4119..4200 +
1681464145.0697448-CDS-Ecto-sp13_S_contig8722:5077..52311681464145.0697448-CDS-Ecto-sp13_S_contig8722:5077..5231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8722 5078..5231 +
1681464145.0865161-CDS-Ecto-sp13_S_contig8722:6477..66791681464145.0865161-CDS-Ecto-sp13_S_contig8722:6477..6679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8722 6478..6679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8722.20187.1prot_Ecto-sp13_S_contig8722.20187.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8722 4119..6679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8722.20187.1

>prot_Ecto-sp13_S_contig8722.20187.1 ID=prot_Ecto-sp13_S_contig8722.20187.1|Name=mRNA_Ecto-sp13_S_contig8722.20187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MFVHGKFRSSATSVVQAAESMQSGVEGGCSSTKTESAVGKIERSLRSLLG
KVAKHSDFEDSQLFRFFKENLPDLEGQIRDLEADHSETQLGNDALDRIRN
LRSAPTTAGAVSGGADVASAQAVVIALKAYAESLESHLEREERVLV
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mRNA from alignment at Ecto-sp13_S_contig8722:4119..6679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8722.20187.1 ID=mRNA_Ecto-sp13_S_contig8722.20187.1|Name=mRNA_Ecto-sp13_S_contig8722.20187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8722:4119..6679+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCCACGGAAAGTTTCGCTCCTCTGCCACATCGGTCGTCCAGGC
GGCGGAGTCGATGCAGTCGGGCGTCGAAGGAGGTGTGTACGCTCTTTCGA
GTACGCTTCTTTTTTCTTTGGGAAGGCATAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAATAGAGAGAGATATAAAGA
GAGGAAGAGAATGAGACAGGGAAAGAGAAATAAGAGAAATTATGAGAGAA
GGAGAAGGAAAAAGAGGAAGAGAAAAATAAACAGAAAGAGAAAGAGGAAG
AGGAGACTGTTTTTTCTTTGAGGAGACGTTAGTGGGTGCTTGCTGAGCAC
AGTGTATATGCCCACCCGACCTTCAAGCGCTTTGTTCCTGGTACAAGACG
GCCGAAAGGCCAATTCTGTGCCGGATGTATCCGCCCCTTTCAAGCGTAAA
CCTGTTAGCGCGTAGGTGTCACATACGCAGAACAGACGTGTAGAATACAT
TAGCATGACAAAATCAAAACTATCTCAAGGATTGCGGCTTTCTTTTTGTG
TGTGTTTTTGCACACGACGCACACCAGACCCGGGCCTAGAAACGTCCTCG
CTTGGACGTGAAGGGGAGCGAGGGGATGCCAGGTGGTTGAGACTTAATTT
TCTTGTCTGCTTCGAAACGTTCTTCCTCCTCGCCTCCTGAGTTCCGTCGA
TATGATTTTAGAGGGCGAGGACAACGCAACCGTGCCTTTCGTTTCTTCTT
TACTTCAGATAACCTTCCGTGTGAATGATTATTGGTCAATCTTTACTCCC
AGGGGTTGAAAACAACAATTTTCATTCGATATCTGAAGCTTCAATGGTGT
AGTAAATTCAAAGAATAACTATTTCTCTACATAATCCCATTTCTTTGAAG
TATTTTTCATTTCCTCTTGTCCTGATTATCTCTCTTTTCTTAATGTGTGC
CTCTCTCAGGGTGTTCATCGACTAAGACGGAATCGGCCGTGGGAAAGATC
GAGCGCTCCCTCCGAAGCCTGCTCGGCAAGGTCGCGAAGCACAGCGACTT
CGAAGACTCCCAGCTGTTCCGCTTCTTCAAGGAGAACTTGCCGGACCTCG
AGGGGCAGATTAGGTACGACGCAGGAGCCGCAGAGAGCGTGATGCTTGAG
GTCTTGAGACGCCGTTCGTTATGGTCTTGTTGTTGTTGCTGTAGGAGATG
GTGGTGGTGGGGGTGATGATGGTGATGTTGGTTTTGCTGCTGTTGTTGTT
GCTGCTGCCGTTGTTCTTGTGTCGTGGTCGTGGTCGTCGTCATCGTCGTC
TTGACACTGTCGAACCCGCCCCGAACTCTGCTCTGTACCTTCTATTCATC
CGCACCGGTCGAGCTGACGCCATAACTATCACCACGAAAGGGTTACGCAG
TCCTAAACACCAAGAGAAAACAGTACGGACCTTGGAGGGGAGCATGACAA
GGGTGCGATGGAAGTCTTGTGAAAGGTGTCCCACATGTCCGAATGGTAGA
GGCCCGGGTGTGCTGTATGCGGTGACGAATTCTCTTCAGCGACAAACGAA
AACTCGTGGCACGCTGGTAGGGAACATTTCATCTCATTGCTGCCATATAG
AGATCGACGGGTGGCAGCCCCTCCCCCCTCCCCCCCCTTTGTTGCGAGCC
TTGAAGCGGTACTGCGATGTTCTTTAGATATGTGTTGCGTCCCCGAAACT
GAAAAATAACAAAATGCCCACAAGCAGAACAGTGTACATCAAGTCTTCAC
AATTATTCGCGAGAGCTGTCCTTCTCAACCATTTTTGCACGTCTGTTTTT
TATTTTTGTCTCCAACCCATCTAAACTCGGGGTTAGTCATTGTACACCTG
CTCTGTGCACAAGTAATCCGGTCCTCTTTGCCAGCGGTCCCCACATGAGT
TGCTCTCTGCGACCAGAAAACCGTACACGACCCGCGAGTAGGGGTACCAA
TGATACTCGCACGGTGCCCTTGGACGCCACGCCACCGTTGTCTCCTGTCT
CTGTCTCTTTCTCTGTCTCTGTCTCTGTCTCTCTCCCCCTCTCTCCCTCT
CTCTCCCTCTCTCTCTCTCTCTGCTACGCCTGTTCTTTGTTCTTTGGCCT
TCATTGTGAGCCCCTTCACCGGAACAGTCTCCAAACACACATCGAAAGCA
CCCAACACCCACATCCCTTAACCCCTTGCCTCGCGACGACATTTTCCAAT
TTCTTTTCCGGACTATCTTGCCGTTAGGGACCTACTGTAGAAGCCGACCA
CCTGCGACAAGCAGCTTGGAAATGACGCGCTCGACCTATGTGAACCCCCT
TGCCCCGCGACCTTTTCCCCCCAAATTTTTCTTTTTTCCTGCCCATCTTT
TCCCGGCAGGGACCTAGAAGCCGACCATTCCGAAACGCAGCTCGGAAACG
ATGCCCTCGACCGCATCAGGAACCTTCGGTCTGCCCCCACCACCGCCGGG
GCGGTTAGCGGCGGCGCCGATGTCGCCTCCGCCCAGGCCGTGGTGATCGC
CCTCAAGGCCTACGCCGAGAGCCTGGAGAGCCACCTGGAGAGGGAGGAGA
GGGTTCTGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8722:4119..6679+

>mRNA_Ecto-sp13_S_contig8722.20187.1 ID=mRNA_Ecto-sp13_S_contig8722.20187.1|Name=mRNA_Ecto-sp13_S_contig8722.20187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8722:4119..6679+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCCACGGAAAGTTTCGCTCCTCTGCCACATCGGTCGTCCAGGC
GGCGGAGTCGATGCAGTCGGGCGTCGAAGGAGGGTGTTCATCGACTAAGA
CGGAATCGGCCGTGGGAAAGATCGAGCGCTCCCTCCGAAGCCTGCTCGGC
AAGGTCGCGAAGCACAGCGACTTCGAAGACTCCCAGCTGTTCCGCTTCTT
CAAGGAGAACTTGCCGGACCTCGAGGGGCAGATTAGGGACCTAGAAGCCG
ACCATTCCGAAACGCAGCTCGGAAACGATGCCCTCGACCGCATCAGGAAC
CTTCGGTCTGCCCCCACCACCGCCGGGGCGGTTAGCGGCGGCGCCGATGT
CGCCTCCGCCCAGGCCGTGGTGATCGCCCTCAAGGCCTACGCCGAGAGCC
TGGAGAGCCACCTGGAGAGGGAGGAGAGGGTTCTGGTC
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