mRNA_Ecto-sp13_S_contig12429.2018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12429.2018.1
Unique NamemRNA_Ecto-sp13_S_contig12429.2018.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12429.2018.1 vs. uniprot
Match: A0A6H5K875_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K875_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.790e-29
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:  136 CGGRFTEGK---GWLQGTQVFLQIGPRNSSSQHRSSSGGTTTATSGLGSITATGAVAPSSGTPKSAHNKDDTAQVLITITQEDSRYHRRDYTERGERRRSIG 432
            CG R+ EG+   G + G +V+ +IGPR+SS   R++SGGTTT TSG G  TATGAVAPSSGTPKSA+NKD+TAQVLIT+TQEDSRYHR+DYTERGERRRSIG
Sbjct:  479 CGRRWIEGRALPGVVGGRRVWGKIGPRDSSI--RNNSGGTTT-TSGFGITTATGAVAPSSGTPKSAYNKDNTAQVLITVTQEDSRYHRKDYTERGERRRSIG 577
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BLAST of mRNA_Ecto-sp13_S_contig12429.2018.1 vs. uniprot
Match: D8LKI3_ECTSI (Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.580e-25
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:  145 RFTEGKGWLQGTQVFLQIGPRNSSSQHRSSSGGTTTATSGLGSITATGAVAPSSGTPKSAHNKDDTAQVLIT 360
            RFTEGKGWLQGTQVFL+IGPR+SS  +  SSGGTTT+ SGLGS TATGAVAPSSGTPKSAHNKDDTAQVLIT
Sbjct:  448 RFTEGKGWLQGTQVFLEIGPRDSSIHN--SSGGTTTS-SGLGSTTATGAVAPSSGTPKSAHNKDDTAQVLIT 516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12429.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K875_9PHAE3.790e-2971.57Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LKI3_ECTSI5.580e-2586.11Calpain 8 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12429contigEcto-sp13_S_contig12429:2092..4022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score110.9
Seed ortholog evalue5.2e-22
Seed eggNOG ortholog2880.D8LKI3
Model size456
KEGG koko:K08574,ko:K08579
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size456
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.9174647-CDS-Ecto-sp13_S_contig12429:2091..21871681462661.9174647-CDS-Ecto-sp13_S_contig12429:2091..2187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12429 2092..2187 -
1681462661.930906-CDS-Ecto-sp13_S_contig12429:3081..32951681462661.930906-CDS-Ecto-sp13_S_contig12429:3081..3295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12429 3082..3295 -
1681462661.9417067-CDS-Ecto-sp13_S_contig12429:3876..40221681462661.9417067-CDS-Ecto-sp13_S_contig12429:3876..4022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12429 3877..4022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12429.2018.1prot_Ecto-sp13_S_contig12429.2018.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12429 2092..4022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12429.2018.1

>prot_Ecto-sp13_S_contig12429.2018.1 ID=prot_Ecto-sp13_S_contig12429.2018.1|Name=mRNA_Ecto-sp13_S_contig12429.2018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
AAKVTSNGTNGPAPRPSTAPGAASELAAGAGSREGRCQGSWEGEGCGGRF
TEGKGWLQGTQVFLQIGPRNSSSQHRSSSGGTTTATSGLGSITATGAVAP
SSGTPKSAHNKDDTAQVLITITQEDSRYHRRDYTERGERRRSIGTSFATD
R*
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mRNA from alignment at Ecto-sp13_S_contig12429:2092..4022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12429.2018.1 ID=mRNA_Ecto-sp13_S_contig12429.2018.1|Name=mRNA_Ecto-sp13_S_contig12429.2018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12429:2092..4022- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGAAAGTGACCAGCAACGGTACCAACGGCCCGGCTCCGCGACCGTC
CACTGCCCCTGGCGCGGCCTCCGAGCTTGCGGCCGGCGCTGGATCGAGGG
AAGGGCGCTGCCAGGGGTCGTGGGAGGGAGAAGGGTGTGGGGGAAGGTAT
TTTGCTCTGTGTCGAAAAATCTTTGAGATCGGTGATAATCACTTTGCTGT
ATGGTGTCGGCAAGCCCGAGCGGTGCTTTCGGCAATGAATGCCAAGGGCA
ACCGTGAAGTGTGAGCAGAGCAGCCTGCGGGTTCTGGAGGGAACAGACGG
GATGAGACGGGGGCAGGAATGCACAACTTAATCCTGTTTCAACATCCCAA
CATAAATTAGTTTCTCTTCATCGATGCATGCTTCCTGTGGATTTAGAACG
ATGTTTCTTCAAAGGTGTATTCTAGTAGACCTGGGTCTAGAAGGATGTAA
CGCGTTTGTAGTATTGGGACACGGCCAGTCATTGGTGTGCTCTTGTGTCC
GTGCTGTCCACACGCCCGAAACAGGTACAACAAGCCTGTTGGAAGCAATC
TCCACGGTGTACAGCTACCTACTGAACTTGCTCTCGAGAAGACGAATAGT
TTCTCGTCCTCTCCCTTCTTGTTCTACGTACACCTCCTTGATAAAGAGCG
CGAATATTGGACATTTCTGCGAATGCACGCGTACACGCGTTCCGTTGAAC
GAACGAATCCAACCGGAAACGAAACAGATTCACCGAAGGCAAAGGGTGGC
TCCAAGGAACTCAAGTCTTTCTGCAGATTGGGCCCCGTAACAGCAGCAGT
CAGCATCGCAGCAGCAGCGGCGGCACCACCACCGCCACCAGCGGTCTCGG
CAGCATCACCGCGACAGGCGCGGTCGCACCGTCATCCGGAACGCCGAAAA
GTGCCCACAACAAGGACGACACTGCTCAAGTGCTGATCACGGTGAGCATG
ATAAATCACGGGCAGAAGCACGGGGGAAAGGGAGTGGGGCTTTTTTGCTG
CCTGAGGTGGGTTTAATGTTAGACACGATTGTTGTCGCACTCCCTGTCGT
AGAACACACTTTTCCTGGCCCACGTAGATTCCCTTCCAGCCTCGGAGAGT
GAACTCCTCAATGAAAGTCGTTTCATTCATCCATCACCTGTTAACGCCGT
CGCGGGGAGGTCTGCGGTGTCTAACCCTCGATGAAACAGGGGCTCGTTGA
GCTCTATAGACGGCAGTCCCGATCTCAATCGACGCCAGCCTCCACTGCGT
AGTATGACGTTGTGCTCGAAATTGATTGGCTGGCGTTTGCTATCAGGTGC
AAGGTATGTCCGGCGTGTTTGTGGGTTGTTCTTCACCGCATTGAGGAGCG
TGAATAGTAGCTGCCCGAATGGTTGGGGATGGGGTGTGGCTGGGGCAGGG
GATGACCGCGTTGTCGTCGCTTCTAGCCTTCGCTGAGTGCTGTTGGGGAC
TATTTGGGGAGAGGAGTTTGAACCGATGTACACCGGATGAGAGACAGCAT
TATACCACTCACAAGCCACATTTTGCCGATGGCACTTCCCCATGCTTTTC
GACAAGTGGAGAGAGAGCCATAAGCGTTGTGAATGCCTCAGCATGCCATG
TGATGTTTGGCGCCGAGAACACAAGAAGTAGACGCAGCCTCGCAAGACTG
TGGCAACACCGCGACGCCGCCGGACAGGTATGGTGCTCATCACACCAACG
GGGTAGAACGTGAAGCGCTTTTGCCACGCGCAGGTACACCGTGTATCACA
TGAGGATTTCGCGCTTGGCCGAAACTGCCGCTCGTCGTGGGAGGGCTCTT
GACCAATCCGAGCGACGCCGCGACCCGTGACGCAGATCACCCAGGAAGAT
TCGAGGTACCACCGCAGGGACTACACCGAGCGAGGCGAGAGACGACGCTC
CATCGGTACGTCCTTCGCAACAGACAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12429:2092..4022-

>mRNA_Ecto-sp13_S_contig12429.2018.1 ID=mRNA_Ecto-sp13_S_contig12429.2018.1|Name=mRNA_Ecto-sp13_S_contig12429.2018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12429:2092..4022- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGAAAGTGACCAGCAACGGTACCAACGGCCCGGCTCCGCGACCGTC
CACTGCCCCTGGCGCGGCCTCCGAGCTTGCGGCCGGCGCTGGATCGAGGG
AAGGGCGCTGCCAGGGGTCGTGGGAGGGAGAAGGGTGTGGGGGAAGATTC
ACCGAAGGCAAAGGGTGGCTCCAAGGAACTCAAGTCTTTCTGCAGATTGG
GCCCCGTAACAGCAGCAGTCAGCATCGCAGCAGCAGCGGCGGCACCACCA
CCGCCACCAGCGGTCTCGGCAGCATCACCGCGACAGGCGCGGTCGCACCG
TCATCCGGAACGCCGAAAAGTGCCCACAACAAGGACGACACTGCTCAAGT
GCTGATCACGATCACCCAGGAAGATTCGAGGTACCACCGCAGGGACTACA
CCGAGCGAGGCGAGAGACGACGCTCCATCGGTACGTCCTTCGCAACAGAC
AGATGA
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