mRNA_Ecto-sp13_S_contig8707.20172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8707.20172.1
Unique NamemRNA_Ecto-sp13_S_contig8707.20172.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8707.20172.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.340e-48
Identity = 139/160 (86.88%), Postives = 142/160 (88.75%), Query Frame = 1 
Query:  778 KTTPHAPKREGDVSIRLGVSVDPSSLVANLPGGCGGXXXXXXXXXXXXXXXXPEPDFETASXXXXXX-KAIGSGGPDGDRVADRLGGGYWGGGAGAGPQGHRGSXXXXXXXXNDQDPGDMYAGXXXXXXXXDAVLGWGRQEGGNNPGPMGVLGGIGGDQR 1254
            KTTPHAPKREGDVSIRLGVSVD S+LV NLPGG G XXXXXXXXXX      PEPDF+ AS  XXXX KAIGSGGPDGDRVADRLGGGYWGGGA  GPQGHRGSXXXXXXXX DQDPGDMYAGXXXXXXX DA+LGWGRQEGGNNPGPMGVLGGIGGDQR
Sbjct:  231 KTTPHAPKREGDVSIRLGVSVDASTLVGNLPGG-GXXXXXXXXXXXSRSARSPEPDFDAASGVXXXXXKAIGSGGPDGDRVADRLGGGYWGGGAXXGPQGHRGSXXXXXXXXXDQDPGDMYAGXXXXXXX-DAILGWGRQEGGNNPGPMGVLGGIGGDQR 388
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BLAST of mRNA_Ecto-sp13_S_contig8707.20172.1 vs. uniprot
Match: A0A6H5KHX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.300e-27
Identity = 82/114 (71.93%), Postives = 85/114 (74.56%), Query Frame = 2 
Query:  905 TAARADRRGRRSPISRPQAAAAAGARRSAAV--VRTETAWQTGSAAATGEEERERGPRGTEVAEAWVEGAEMIRTRGTCMQVAEAVVAVAMLSWGGDGKKVATTLGRWE--FWG 1234
            TAA ADRRG RSPISRPQAA             VRTET WQTGSAAATGEEERERGPRGTEVAEAWVEGAEMIR RGTCM+VA A  AVAMLSWGGDGKK+   +   E   WG
Sbjct:  403 TAAPADRRGHRSPISRPQAAXXXXXXXXXXXXXVRTETEWQTGSAAATGEEERERGPRGTEVAEAWVEGAEMIRIRGTCMRVA-AAAAVAMLSWGGDGKKLVCEIEHVEKALWG 515
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8707.20172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0X0_ECTSI3.340e-4886.88EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KHX5_9PHAE1.300e-2771.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8707contigEcto-sp13_S_contig8707:216..4431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1785
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-23_001980.1
Cds size1785
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.654586-CDS-Ecto-sp13_S_contig8707:215..8021681464143.654586-CDS-Ecto-sp13_S_contig8707:215..802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8707 216..802 -
1681464143.66454-CDS-Ecto-sp13_S_contig8707:1730..25651681464143.66454-CDS-Ecto-sp13_S_contig8707:1730..2565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8707 1731..2565 -
1681464143.6732917-CDS-Ecto-sp13_S_contig8707:3316..35661681464143.6732917-CDS-Ecto-sp13_S_contig8707:3316..3566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8707 3317..3566 -
1681464143.6867263-CDS-Ecto-sp13_S_contig8707:4318..44311681464143.6867263-CDS-Ecto-sp13_S_contig8707:4318..4431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8707 4319..4431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8707.20172.1prot_Ecto-sp13_S_contig8707.20172.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8707 216..4431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8707.20172.1

>prot_Ecto-sp13_S_contig8707.20172.1 ID=prot_Ecto-sp13_S_contig8707.20172.1|Name=mRNA_Ecto-sp13_S_contig8707.20172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=595bp
CVVSNCTKLSTYGYEGFLARYCFSHKSSGMVYLKNRKRCEFYECTRQPTY
GQDGQRARYCSSHKEDGMIDVKNCRCKHPGCTRQPNYGHEGGRAKYCSSH
KLAKMVNVVSRRCEFPACKRQPIYGFEGEKATFCPTHRMDAMSDVVNRHC
EYTGCTKTPSYGYVGERAQFCSHHHLPDMEDVKNRRCEWHECRRYPIFGH
EGERARFCSAHKTDDMVNVRNRRCEEGSCTKLPTHGFPGEKAKACQAHAK
SGMVNLKGRKTTPHAPKREGDVSIRLGVSVDPSSLVANLPGGCGGGGGGA
GNGGSSRSARSPEPDFETASGGGGGGKAIGSGGPDGDRVADRLGGGYWGG
GAGAGPQGHRGSGGVGRGRGNDQDPGDMYAGGGGGSGGGDAVLGWGRQEG
GNNPGPMGVLGGIGGDQRQQQYASSAVDDQQALRMRRLGQDPPQDVKQQH
QQQQQHMRSMQQQQPTGLHRRPGQQQQQQQQQQQLGGTSLDHNFYGGGGV
PPDEYSHPLGIPPPRSSQQQQQQQRQQQFMTGGGGGLRPLARDSHFPGHG
VSYRDQLHQQQQQHLYGPNPYGFLPHMSSGSQGGYGPGAIGGDNG
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mRNA from alignment at Ecto-sp13_S_contig8707:216..4431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8707.20172.1 ID=mRNA_Ecto-sp13_S_contig8707.20172.1|Name=mRNA_Ecto-sp13_S_contig8707.20172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8707:216..4431- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTCGTGTCTAACTGCACCAAGCTGTCAACCTACGGTTACGAGGGGTT
CCTGGCGCGCTACTGCTTCAGCCACAAGTCCAGCGGGATGGTCTACCTCA
AGAACCGGAAGCGGTAAGTTTTTTGTTCTTCGATACAGCAGTAGAGGTCC
ATGTTTAGTGCCGGTGTGTTCCCAGAAAATCGACCGGCTTCACTATATAC
CGGACCTGCACTGTTCCAACTGTTGAGAATGACTCGGAAATTCAGTGTGC
CCGCCGAAAACACGGGCACTGTAGCGGGCACCGGCACTAATCAACCGGCA
CTTAACGGTGACCTCTTCTGCTGCACAACACGACATATCCATGAGTTTTC
TCGTGTCACGGCCCCGCGCCCGGGAGCTTGTATGCGAGAAGCGGGGCACT
GTAATCATGTAAAAACAAGAAGTGATTTTCGGTCAGTGCCAATCGACAGA
AATGCGCGTATTTTTTCGGGCAATACAACAAATTGTTTTGGTGGAGGGGC
GGTTGTAGAGTGGTTCATTTTTCGCAAGTTTGTCAAGAGTCGTGGGAGGG
GACTGCAGCAGGTTTCGTTCCGCCGCGAAGAGTTGAGGCCCGAGGCGAAA
GGATGGAGGCATATGGGGTGGACTGTGTGGGTAGGCTATAAGAACTGTTC
GATGCAGCCCGCCCCTTATGTGCTGCTGCGCTAAGCTTCATGCTAGCGAA
GGAAGAACCGACATTGTTCTCACCAGATTCTGTCGCGCTAAACTCTTAGC
CCGCAATCGACGCGTAATACCTGGGTGTGGCTTTCCTACATACATACCCA
TTCGATAAGATCGTCAAAAATGTTCTTGATCCCCACGGATGAACCCCGGA
ATTTTCTGCTATCAGGTGCGAATTCTACGAATGCACGAGGCAGCCGACGT
ACGGCCAGGACGGCCAGCGTGCGAGGTACTGCTCGTCCCATAAGGAAGAC
GGCATGATCGACGTCAAGAACTGCCGGTGTAAGCACCCGGGCTGCACTCG
GCAGCCCAACTACGGCCACGAGGGCGGCCGCGCAAAGTACTGCTCGTCGC
ACAAGCTGGCCAAGATGGTGAACGTCGTCAGCCGGCGGTGCGAGTTCCCG
GCCTGCAAACGGCAGGTAGGTGTGTGTATTGTGTGCTTTGTTGCGAGGCA
TCGACCGCGCTAACCGGCAGGCCGATGAAGAGCTGCCAGTATTGCAGCGG
GATCAAGAAAATACGAACACCCAAAGTCAAAGGGTAAAGCTGGGGGTCAA
ACGAGAGGGGAGGGGGGGGCGCAGGAGTCAAAAGACAAAGTCGTGCTTTC
GAACTACAAGGAGAAGACGCAATGTGTGTGTCTGTGTGTGTTTTCTTCCT
GTTATTCTGGCGCCGTTCTACACACCTTGTGGCGCTTTGTGTTTGACGTA
CATATCACCCTGGGGCACACAAGAGGAAGTTCACACAGTTTTCCTTCTTT
TTTTTCTTGAGTACAAAGAAGGAAGGAATTCGGCTGTTTATTTGTGTTTT
TGCACGAGTGGTATTGTTCTAGAAGGGGGGTGAAGGTAAGGGTTGTGCTA
GCCGGCGGTGACGATTAGCAAGCGAGAGCTCGCATGACCGCGACGCGGCA
TGTAGTGCCCGAATTTTATCGCAATGCCAGCTGCTGGAGGAGTTTTCGTG
TCACCGTTGAGGGATGGCTTCGAACTGGTTCGGTAGATAGCTGGTGTGCA
AGTTGTTTTTTCTCGTCTGCAAGTTATTGGCCGATTACACGCAAGGACGA
TGACGATGCCCATGTTTGGCGGTGCGAACTTCGTCTTGGGGATCGATTGC
CTGCAGCCGTGCATCACAGTGAGAACCCCCCCCCTCGCCCCGCCTCTCCC
TTCAATCTCGTTTCAGCCGATCTACGGGTTCGAGGGTGAGAAAGCCACGT
TCTGCCCGACCCACCGGATGGACGCGATGTCGGACGTGGTGAACCGGCAC
TGCGAGTACACGGGGTGCACGAAGACACCGAGCTACGGCTACGTCGGGGA
GCGCGCCCAGTTCTGCTCCCACCACCACCTCCCGGACATGGAGGACGTAA
AGAACCGCCGGTGCGAGTGGCACGAGTGCCGCCGCTACCCTATCTTCGGG
CACGAGGGGGAGCGGGCCCGGTTCTGCTCGGCGCACAAGACGGACGACAT
GGTGAACGTGCGCAACCGCAGGTGCGAGGAGGGTAGCTGCACTAAGCTGC
CCACCCACGGGTTCCCGGGGGAGAAGGCGAAGGCGTGCCAGGCTCACGCG
AAGAGCGGGATGGTTAACCTCAAGGGACGCAAGACGACCCCGCACGCACC
CAAGCGAGAGGGGGACGTGAGCATCCGCCTCGGCGTCTCTGTTGACCCTT
CGTCCCTCGTCGCTAACCTTCCCGGTGGTTGCGGTGGCGGTGGCGGCGGG
GCGGGCAACGGCGGCTCGAGCAGATCGGCGAGGTCGCCGGAGCCCGATTT
CGAGACCGCAAGCGGCGGCGGCGGCGGGGGCAAGGCGATCGGCAGCGGTG
GTCCGGACGGAGACCGCGTGGCAGACCGGCTCGGCGGCGGCTACTGGGGA
GGAGGAGCGGGAGCGGGGCCCCAGGGGCACAGAGGTAGCGGAGGCGTGGG
TCGAGGGCGCGGAAATGATCAGGACCCGGGGGACATGTATGCAGGTGGCG
GAGGCGGTAGTGGCGGTGGCGATGCTGTCTTGGGGTGGGGACGGCAAGAA
GGTGAGACGGATGGAGGAGTTATGTATCGCAATGCAGGGGTGGTGAGGCC
TTTGGTTCCGTCCTTCTTTCACGGCGGCCATGTCCTGGCCGTGTCAAGAG
ACGAACTCGGAGGTGTTCCCTTTTTTGTGCCCACAGCCCGTGTGGCGCTT
CGTGTACCGCCCACGCGGCCTCGCAAAGCAAGTTGTCTTCCCTACCTTGA
TGCGAAGAGTCTATCGTACCGAGAGAGCGAAGAGCCTACCGTACCGTGAG
GCGAATGGTTAACCGTACCGTGATGGTGCGATAGTCCCCACCGAACCGCA
AAGCGAACAACCTTTATCCTTGCCGCAAAAGCGCAGAGTGTCGTAGCGTC
AAGCGCTTGGGCCTGTAAAAGTTTGTGACGGTTAGTTGTACAACTTGCCG
GAGGGACACGACCGGGCGCGGACGGAGGCTTGCGGGTGAAAGATGCAGCA
GACGCTCTCTGCGTTTTTTTTTCGATCGAACCGGGCGTGTCTTGTGCCCC
GCCATCTAGAGAGTGTTGCGTGTGAACCACCCTTGCCTTCCTTGAGAGCA
CCGAAGTGTTGGCGTTGCCGCCGACTTGTCTTGAGTGCTGTATAGTAGGG
TGTCCACCTTTGCACTTCATAGCTCGTGTGCGAAATAGAGCACGTAAAGA
AAGCGCTGAGGGGCATCAGCGGGACCTTTCGGCTCTGTGTCTGTAAAAGT
GTTTGAGGTTCCCGCCTTGCAGCGACAAAAATGTCGGACCCTGTCGAGAT
TGTATGCTTTCATCCAACACGTTTGCATCATACGAAAATCGCTTCCAAGG
ACTTCAATACTGAGCCTGGCCGAGGGCGGGATTTACTATTATAAAAGTAT
TGTGTGGGGACAGCCCAACTGAGATACCTCGTACGATTTTTTTCGTTATC
CTATCCTTTCTCGACACGTGACGGCGCAGGTGGCAACAACCCTGGGCCGA
TGGGAGTTCTGGGGGGCATAGGGGGAGACCAACGGCAGCAGCAGTACGCG
TCCTCCGCCGTAGACGACCAGCAGGCGCTGCGGATGAGGCGGCTGGGGCA
GGACCCACCACAGGACGTAAAGCAGCAGCATCAGCAACAGCAGCAGCACA
TGCGGTCGATGCAACAGCAACAGCCGACCGGTCTTCACCGCCGTCCTGGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATTGGGCGGGACCTCTCT
CGACCACAACTTTTACGGCGGGGGGGGGGTCCCGCCGGATGAGTACTCGC
ACCCCCTGGGCATTCCCCCGCCCCGGTCCTCCCAGCAGCAGCAGCAGCAG
CAGCGGCAGCAGCAGTTTATGACCGGCGGGGGCGGGGGGCTGAGACCGCT
CGCTCGCGACTCGCACTTCCCGGGGCACGGGGTTAGCTACCGCGACCAGC
TCCATCAGCAGCAGCAGCAGCACCTGTACGGCCCTAACCCGTACGGCTTC
TTGCCGCACATGAGCTCCGGTTCTCAGGGCGGGTACGGGCCCGGTGCCAT
CGGCGGCGACAACGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8707:216..4431-

>mRNA_Ecto-sp13_S_contig8707.20172.1 ID=mRNA_Ecto-sp13_S_contig8707.20172.1|Name=mRNA_Ecto-sp13_S_contig8707.20172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8707:216..4431- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTCGTGTCTAACTGCACCAAGCTGTCAACCTACGGTTACGAGGGGTT
CCTGGCGCGCTACTGCTTCAGCCACAAGTCCAGCGGGATGGTCTACCTCA
AGAACCGGAAGCGGTGCGAATTCTACGAATGCACGAGGCAGCCGACGTAC
GGCCAGGACGGCCAGCGTGCGAGGTACTGCTCGTCCCATAAGGAAGACGG
CATGATCGACGTCAAGAACTGCCGGTGTAAGCACCCGGGCTGCACTCGGC
AGCCCAACTACGGCCACGAGGGCGGCCGCGCAAAGTACTGCTCGTCGCAC
AAGCTGGCCAAGATGGTGAACGTCGTCAGCCGGCGGTGCGAGTTCCCGGC
CTGCAAACGGCAGCCGATCTACGGGTTCGAGGGTGAGAAAGCCACGTTCT
GCCCGACCCACCGGATGGACGCGATGTCGGACGTGGTGAACCGGCACTGC
GAGTACACGGGGTGCACGAAGACACCGAGCTACGGCTACGTCGGGGAGCG
CGCCCAGTTCTGCTCCCACCACCACCTCCCGGACATGGAGGACGTAAAGA
ACCGCCGGTGCGAGTGGCACGAGTGCCGCCGCTACCCTATCTTCGGGCAC
GAGGGGGAGCGGGCCCGGTTCTGCTCGGCGCACAAGACGGACGACATGGT
GAACGTGCGCAACCGCAGGTGCGAGGAGGGTAGCTGCACTAAGCTGCCCA
CCCACGGGTTCCCGGGGGAGAAGGCGAAGGCGTGCCAGGCTCACGCGAAG
AGCGGGATGGTTAACCTCAAGGGACGCAAGACGACCCCGCACGCACCCAA
GCGAGAGGGGGACGTGAGCATCCGCCTCGGCGTCTCTGTTGACCCTTCGT
CCCTCGTCGCTAACCTTCCCGGTGGTTGCGGTGGCGGTGGCGGCGGGGCG
GGCAACGGCGGCTCGAGCAGATCGGCGAGGTCGCCGGAGCCCGATTTCGA
GACCGCAAGCGGCGGCGGCGGCGGGGGCAAGGCGATCGGCAGCGGTGGTC
CGGACGGAGACCGCGTGGCAGACCGGCTCGGCGGCGGCTACTGGGGAGGA
GGAGCGGGAGCGGGGCCCCAGGGGCACAGAGGTAGCGGAGGCGTGGGTCG
AGGGCGCGGAAATGATCAGGACCCGGGGGACATGTATGCAGGTGGCGGAG
GCGGTAGTGGCGGTGGCGATGCTGTCTTGGGGTGGGGACGGCAAGAAGGT
GGCAACAACCCTGGGCCGATGGGAGTTCTGGGGGGCATAGGGGGAGACCA
ACGGCAGCAGCAGTACGCGTCCTCCGCCGTAGACGACCAGCAGGCGCTGC
GGATGAGGCGGCTGGGGCAGGACCCACCACAGGACGTAAAGCAGCAGCAT
CAGCAACAGCAGCAGCACATGCGGTCGATGCAACAGCAACAGCCGACCGG
TCTTCACCGCCGTCCTGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AATTGGGCGGGACCTCTCTCGACCACAACTTTTACGGCGGGGGGGGGGTC
CCGCCGGATGAGTACTCGCACCCCCTGGGCATTCCCCCGCCCCGGTCCTC
CCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGTTTATGACCGGCGGGG
GCGGGGGGCTGAGACCGCTCGCTCGCGACTCGCACTTCCCGGGGCACGGG
GTTAGCTACCGCGACCAGCTCCATCAGCAGCAGCAGCAGCACCTGTACGG
CCCTAACCCGTACGGCTTCTTGCCGCACATGAGCTCCGGTTCTCAGGGCG
GGTACGGGCCCGGTGCCATCGGCGGCGACAACGGT
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