mRNA_Ecto-sp13_S_contig8706.20169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8706.20169.1
Unique NamemRNA_Ecto-sp13_S_contig8706.20169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8706.20169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8706contigEcto-sp13_S_contig8706:1733..2864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size644
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.5101461-UTR-Ecto-sp13_S_contig8706:1732..20131681464143.5101461-UTR-Ecto-sp13_S_contig8706:1732..2013Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8706 1733..2013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.5198047-CDS-Ecto-sp13_S_contig8706:2013..22641681464143.5198047-CDS-Ecto-sp13_S_contig8706:2013..2264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8706 2014..2264 -
1681464143.5287268-CDS-Ecto-sp13_S_contig8706:2752..28641681464143.5287268-CDS-Ecto-sp13_S_contig8706:2752..2864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8706 2753..2864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8706.20169.1prot_Ecto-sp13_S_contig8706.20169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8706 2014..2864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8706.20169.1

>prot_Ecto-sp13_S_contig8706.20169.1 ID=prot_Ecto-sp13_S_contig8706.20169.1|Name=mRNA_Ecto-sp13_S_contig8706.20169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
QNGGGGDNGRCRESCSESDVTITIVGDAVDLVRLVPFGGQTRDTSEWELG
GKWTIFVSFCVGFHAVVLTSVSNHRGKVWRFLLPMEVDTVFGSGASLFKH
CQRQLLLCNELTGLLLTADV*
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mRNA from alignment at Ecto-sp13_S_contig8706:1733..2864-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8706.20169.1 ID=mRNA_Ecto-sp13_S_contig8706.20169.1|Name=mRNA_Ecto-sp13_S_contig8706.20169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8706:1733..2864- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACGGCGGCGGCGGCGACAACGGTAGATGCCGCGAGAGCTGCAGCGA
GAGCGATGTCACCATCACCATCGTCGGCGACGCTGTCGACTTAGTCCGAC
TGGTTCCTTTCGGTGAGGGTTGTCTATGGGTGGTAAGTGGTTTTTGGTAA
CAAGTCAAACCTCCGTCAAATTGTTGGTGGGTGGAGGGGCAGCCAGATAG
GTTGACTTCGCTTCTTTGGAGAGTACTCTTTGGAGAGTATCCCATGAATT
CGGTCGTTTTCCTTTGTGTTAGAGGTGCGCCGGCAGAACTCAGAGTGTAC
AGTGACCAAAAAACATCAGGACCAGTAGCATAGAACGCGTCTCTCTTGAG
ACTGCTGTTGCTCCGTGTTCGACGGTGCTCTGTGGCATGCCCGCGGAATA
TGGTCAATGTTCTCGTGCCCTTGTTTTTTCTTGTCAAGCTTTCGCTCTTA
GTACTTTGAGGTTAGCCTGCGGCCTTCTCAGTTAAAACGTCGGGTATTCC
ACAACGTTCAACCCCGATGTTCAACCCGACAGTGAACGCAGGAATAACAC
GACGACCACTCTTCCCTGCCGGTTTCATTTCCCGATACGCCTACTCCCAG
GTGGACAGACTCGCGACACATCAGAGTGGGAGTTGGGAGGCAAATGGACG
ATATTCGTGTCGTTTTGCGTTGGGTTCCACGCTGTCGTGTTGACATCTGT
CTCAAACCACCGGGGCAAAGTTTGGAGATTCTTGTTGCCAATGGAGGTTG
ACACGGTTTTCGGATCAGGAGCTTCGCTGTTTAAGCACTGCCAGAGGCAA
CTACTGTTGTGCAATGAATTGACGGGACTGCTTTTGACAGCCGATGTGTA
ATTTGTGTCGCAAGATTCGACATCGGTTGTTTCCACATCAGTCCTCGGGG
GATGTACTGTAGGTGGAATTGATCATTTGTTGCGAGAATGAGATCCCTCT
GGATTTTTGTTCAAGTGGGGGTTGACCATCCGAGGGAGCCGAACCGTAAC
ACCGTAGCAATCCAAGCGATGCTGTTAAGCGCGTGCACTCCATTTCTAGA
CGCCTTGCATGTATCAACAAGCGCGGAGGATGGGTGTGCAATGGACGCCT
CGTTTTACGTAGGTTGCTGGATTGGTTGGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8706:1733..2864-

>mRNA_Ecto-sp13_S_contig8706.20169.1 ID=mRNA_Ecto-sp13_S_contig8706.20169.1|Name=mRNA_Ecto-sp13_S_contig8706.20169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8706:1733..2864- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACGGCGGCGGCGGCGACAACGGTAGATGCCGCGAGAGCTGCAGCGA
GAGCGATGTCACCATCACCATCGTCGGCGACGCTGTCGACTTAGTCCGAC
TGGTTCCTTTCGGTGGACAGACTCGCGACACATCAGAGTGGGAGTTGGGA
GGCAAATGGACGATATTCGTGTCGTTTTGCGTTGGGTTCCACGCTGTCGT
GTTGACATCTGTCTCAAACCACCGGGGCAAAGTTTGGAGATTCTTGTTGC
CAATGGAGGTTGACACGGTTTTCGGATCAGGAGCTTCGCTGTTTAAGCAC
TGCCAGAGGCAACTACTGTTGTGCAATGAATTGACGGGACTGCTTTTGAC
AGCCGATGTGTAA
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