mRNA_Ecto-sp13_S_contig8689.20146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8689.20146.1
Unique NamemRNA_Ecto-sp13_S_contig8689.20146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: J4I8P8_9APHY (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4I8P8_9APHY)

HSP 1 Score: 65.9 bits (159), Expect = 4.400e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   19 GAGKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            G GKYVPPS + G  G GE+     + P    +D   +RVTNISEDT E DLRDLF AFGR+ R
Sbjct:  177 GTGKYVPPSMRSGGRGPGEA----MSRPGGSRDDLPTLRVTNISEDTQENDLRDLFGAFGRVAR 236
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: A0A5M3MFN3_CONPW (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MFN3_CONPW)

HSP 1 Score: 65.9 bits (159), Expect = 4.630e-11
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    4 GLGVGGA---GKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            G G GG+   GKYVPPS + G  G GE     A      G+D   +RVTNISEDT E DLRDLF  FGR+ R
Sbjct:  177 GAGAGGSTIGGKYVPPSMRAGARGAGE-----AMGRPGRGDDLPTLRVTNISEDTQENDLRDLFGRFGRVAR 243
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: UPI000440D94D (translation initiation factor 3 RNA-binding subunit n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440D94D)

HSP 1 Score: 65.5 bits (158), Expect = 6.400e-11
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   13 VGGAGKYVPPSRKVGFSGRGES--GPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
             GG  KYVPPS + G  G GES   P GA N     +D   +RVTNISEDT E DLRDLF  FGR+ R
Sbjct:  181 AGGPSKYVPPSMRAGARGPGESMGRPGGAGNR----DDLPTLRVTNISEDTQENDLRDLFGTFGRVAR 244
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: K5VZ60_PHACS (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5VZ60_PHACS)

HSP 1 Score: 65.1 bits (157), Expect = 8.270e-11
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   25 GKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            GKYVPPS + G  G GES       P    +D   +RVTNISEDT E DLRDLF AFGR+ R
Sbjct:  176 GKYVPPSMRNGARGPGES----MGRPGGSRDDLPTLRVTNISEDTQENDLRDLFGAFGRVAR 233
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: A0A0D2MDH3_HYPSF (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2MDH3_HYPSF)

HSP 1 Score: 65.1 bits (157), Expect = 8.650e-11
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   25 GKYVPPSRKVGFSGRGES--GPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            GKYVPPS + G  G GES  G  GAAN     +D   +RVTNISEDT E DLRDLF  FGR+ R
Sbjct:  180 GKYVPPSMRSGARGAGESMRGLGGAANR----DDLPTLRVTNISEDTQENDLRDLFGVFGRVAR 239
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: UPI00129EA836 (eukaryotic translation initiation factor 3 subunit G n=1 Tax=Phasianus colchicus TaxID=9054 RepID=UPI00129EA836)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-10
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   25 GKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            GKYVPPS + G S RGES       P    +D+  IRVTN+SEDT E DL++LF  FG I+R
Sbjct:   36 GKYVPPSLRDGASRRGES-----MQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISR 92
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: A0A165GIT6_9APHY (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165GIT6_9APHY)

HSP 1 Score: 64.3 bits (155), Expect = 1.640e-10
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   16 GGAGKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            GG GKY+PP  + G  G GES     + P    +D   +RVTNISEDT E DLRDLF +FGR+ R
Sbjct:  179 GGTGKYIPPWMRGGARGPGES----MSRPGGSRDDLPTLRVTNISEDTQENDLRDLFGSFGRVAR 239
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: A0A401GZS0_9APHY (Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GZS0_9APHY)

HSP 1 Score: 63.9 bits (154), Expect = 2.250e-10
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   25 GKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            GKYVPPS + G  G GES     + P    +D   +R+TNISEDT E DLRDLF  FGR+ R
Sbjct:  180 GKYVPPSMRPGGRGAGES----MSRPGGSRDDLPTLRITNISEDTQENDLRDLFGTFGRVAR 237
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: A0A2H6NAX7_MICLE (RRM domain-containing protein (Fragment) n=3 Tax=Sauria TaxID=32561 RepID=A0A2H6NAX7_MICLE)

HSP 1 Score: 61.6 bits (148), Expect = 2.570e-10
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   25 GKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            GKYVPPS + G S RGES       P    +D+  IRVTN+SEDT E DL++LF  FG I+R
Sbjct:   34 GKYVPPSLRDGASRRGES-----MQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISR 90
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BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Match: A0A316ZBI4_9BASI (eIF-3 RNA-binding subunit (Fragment) n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZBI4_9BASI)

HSP 1 Score: 63.9 bits (154), Expect = 2.600e-10
Identity = 35/67 (52.24%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   16 GGAGKYVPPSRKVGFSGRGE--SGPEGAANPMAMGEDHTKIRVTNISEDTTEGDLRDLFSAFGRINR 210
            G  GKYVPPS + G  G GE   GP G  N   M      +RVTN+SED  E DLRD+FS FGR+ R
Sbjct:  201 GAGGKYVPPSMRAGAKGAGERMGGPAGGMNRDEM----PTLRVTNLSEDAEEDDLRDIFSRFGRVTR 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8689.20146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J4I8P8_9APHY4.400e-1154.69Eukaryotic translation initiation factor 3 subunit... [more]
A0A5M3MFN3_CONPW4.630e-1152.78Eukaryotic translation initiation factor 3 subunit... [more]
UPI000440D94D6.400e-1155.88translation initiation factor 3 RNA-binding subuni... [more]
K5VZ60_PHACS8.270e-1156.45Eukaryotic translation initiation factor 3 subunit... [more]
A0A0D2MDH3_HYPSF8.650e-1159.38Eukaryotic translation initiation factor 3 subunit... [more]
UPI00129EA8361.340e-1053.23eukaryotic translation initiation factor 3 subunit... [more]
A0A165GIT6_9APHY1.640e-1052.31Eukaryotic translation initiation factor 3 subunit... [more]
A0A401GZS0_9APHY2.250e-1053.23Eukaryotic translation initiation factor 3 subunit... [more]
A0A2H6NAX7_MICLE2.570e-1053.23RRM domain-containing protein (Fragment) n=3 Tax=S... [more]
A0A316ZBI4_9BASI2.600e-1052.24eIF-3 RNA-binding subunit (Fragment) n=1 Tax=Tille... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8689contigEcto-sp13_S_contig8689:6400..6612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score65.9
Seed ortholog evalue9e-09
Seed eggNOG ortholog40492.XP_007303305.1
Preferred nameTIF35
Model size213
KEGG koko:K03248,ko:K20304
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005852,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0032984,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA
EggNOG OGs227S0@155619,38H4F@33154,3H1WN@355688,3NX70@4751,3UZSN@5204,KOG0122@1,KOG0122@2759
Cds size213
COG Functional cat.J
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.4429832-CDS-Ecto-sp13_S_contig8689:6399..66121681464141.4429832-CDS-Ecto-sp13_S_contig8689:6399..6612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8689 6400..6612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8689.20146.1prot_Ecto-sp13_S_contig8689.20146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8689 6400..6612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8689.20146.1

>prot_Ecto-sp13_S_contig8689.20146.1 ID=prot_Ecto-sp13_S_contig8689.20146.1|Name=mRNA_Ecto-sp13_S_contig8689.20146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MGLGVGGAGKYVPPSRKVGFSGRGESGPEGAANPMAMGEDHTKIRVTNIS
EDTTEGDLRDLFSAFGRINR*
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mRNA from alignment at Ecto-sp13_S_contig8689:6400..6612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8689.20146.1 ID=mRNA_Ecto-sp13_S_contig8689.20146.1|Name=mRNA_Ecto-sp13_S_contig8689.20146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8689:6400..6612+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCTGGGCGTGGGAGGGGCCGGGAAGTACGTACCCCCCAGTCGTAA
GGTGGGCTTCTCCGGCCGGGGAGAGTCCGGGCCTGAGGGTGCGGCCAACC
CCATGGCCATGGGTGAGGACCACACCAAGATCAGGGTGACGAACATCAGC
GAGGACACTACGGAGGGTGACCTGAGAGATCTCTTCAGCGCCTTCGGCAG
GATCAACCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8689:6400..6612+

>mRNA_Ecto-sp13_S_contig8689.20146.1 ID=mRNA_Ecto-sp13_S_contig8689.20146.1|Name=mRNA_Ecto-sp13_S_contig8689.20146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8689:6400..6612+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCTGGGCGTGGGAGGGGCCGGGAAGTACGTACCCCCCAGTCGTAA
GGTGGGCTTCTCCGGCCGGGGAGAGTCCGGGCCTGAGGGTGCGGCCAACC
CCATGGCCATGGGTGAGGACCACACCAAGATCAGGGTGACGAACATCAGC
GAGGACACTACGGAGGGTGACCTGAGAGATCTCTTCAGCGCCTTCGGCAG
GATCAACCGGTGA
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