mRNA_Ecto-sp13_S_contig12427.2015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12427.2015.1
Unique NamemRNA_Ecto-sp13_S_contig12427.2015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12427.2015.1 vs. uniprot
Match: A0A6H5K332_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K332_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 3.870e-95
Identity = 143/151 (94.70%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    3 MLFTVSLGKGCRGLDFVATSNSPTADPILRGCWECQATDRDIARYLCPGRCGAVEGETRRRVRHDSFDPQRCATELHERGELVWACAEIARKAFRLVMMVPGGVVLSLAGAPIAGGREVAWPQDVAEDRALIKASSELQRWWRGCISRKRT 455
            MLFTVSLGKGCRGLDFVATSNSPTADP+LRGCWECQATDRD+ARYL PGRCGAVEGETRRRVRHDS+DPQRCA ELHERGELVWACAEIARKAFRLVM+VPGGVVLSLAGAPIAGGREVAWPQDV EDRALIKAS ELQRWWRGCISRKRT
Sbjct:  489 MLFTVSLGKGCRGLDFVATSNSPTADPMLRGCWECQATDRDLARYLSPGRCGAVEGETRRRVRHDSYDPQRCAAELHERGELVWACAEIARKAFRLVMVVPGGVVLSLAGAPIAGGREVAWPQDVEEDRALIKASIELQRWWRGCISRKRT 639
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BLAST of mRNA_Ecto-sp13_S_contig12427.2015.1 vs. uniprot
Match: D8LMX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX6_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 1.310e-91
Identity = 139/151 (92.05%), Postives = 143/151 (94.70%), Query Frame = 3 
Query:    3 MLFTVSLGKGCRGLDFVATSNSPTADPILRGCWECQATDRDIARYLCPGRCGAVEGETRRRVRHDSFDPQRCATELHERGELVWACAEIARKAFRLVMMVPGGVVLSLAGAPIAGGREVAWPQDVAEDRALIKASSELQRWWRGCISRKRT 455
            MLFTVSLGKGCRGLDFVATSNSP ADP+LRGCWECQATDRD+ARYL PGRCGAVEGETRRRVR DS+DPQRCA ELHERGELVWACAEIARKAFRLVM+VPGGVVLSLAGA  AGGREVAWPQDV EDRALIKAS ELQRWWRGCISRKRT
Sbjct:  424 MLFTVSLGKGCRGLDFVATSNSPMADPMLRGCWECQATDRDLARYLSPGRCGAVEGETRRRVRRDSYDPQRCAAELHERGELVWACAEIARKAFRLVMVVPGGVVLSLAGAATAGGREVAWPQDVEEDRALIKASIELQRWWRGCISRKRT 574
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12427.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K332_9PHAE3.870e-9594.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMX6_ECTSI1.310e-9192.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12427contigEcto-sp13_S_contig12427:32..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons3
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.7061498-UTR-Ecto-sp13_S_contig12427:31..331681462661.7061498-UTR-Ecto-sp13_S_contig12427:31..33Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12427 32..33 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.7175498-CDS-Ecto-sp13_S_contig12427:33..1641681462661.7175498-CDS-Ecto-sp13_S_contig12427:33..164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12427 34..164 +
1681462661.728666-CDS-Ecto-sp13_S_contig12427:558..7961681462661.728666-CDS-Ecto-sp13_S_contig12427:558..796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12427 559..796 +
1681462661.7372277-CDS-Ecto-sp13_S_contig12427:999..10831681462661.7372277-CDS-Ecto-sp13_S_contig12427:999..1083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12427 1000..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12427.2015.1prot_Ecto-sp13_S_contig12427.2015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12427 34..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12427.2015.1

>prot_Ecto-sp13_S_contig12427.2015.1 ID=prot_Ecto-sp13_S_contig12427.2015.1|Name=mRNA_Ecto-sp13_S_contig12427.2015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MLFTVSLGKGCRGLDFVATSNSPTADPILRGCWECQATDRDIARYLCPGR
CGAVEGETRRRVRHDSFDPQRCATELHERGELVWACAEIARKAFRLVMMV
PGGVVLSLAGAPIAGGREVAWPQDVAEDRALIKASSELQRWWRGCISRKR
T
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mRNA from alignment at Ecto-sp13_S_contig12427:32..1083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12427.2015.1 ID=mRNA_Ecto-sp13_S_contig12427.2015.1|Name=mRNA_Ecto-sp13_S_contig12427.2015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1052bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12427:32..1083+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATGCTTTTCACGGTGAGCCTAGGGAAAGGCTGTCGCGGCTTGGACTTT
GTCGCGACCAGCAACAGCCCCACCGCAGACCCCATACTGAGAGGGTGCTG
GGAGTGCCAGGCGACTGACCGCGATATCGCCAGGTGCGTAGGTCTCCACG
TATCCACGTAGAGGCTTCGTGCAAATACCATACCACCAAAAAGAGGGGTT
TCGTGAATGAGGCAACTTGTAGTTTGTGTGGCCTATTTAAGCACAAAACG
GCACCGACCGGGCTAGCTTTGGTCGCTGAAAAATGATTTATCTTCGTGCT
CTCTGCTCAATCACGGGTAGAAACCTGCTTGTCAAGATCAATGCCTCGCC
CATTCCCCCCCTCTTCACGGTGAACCTCGACCTGCCTCGTTCTGCGCGGT
TGAAATGGTGCGAACAAAGTCGGCCCCCGATCCATATCCTCGCCACCTCT
TCTTCTTCTTCCGTGGGGCCCTCTAACCTGTCGGTTTCTCCTGTCGGTTT
CTCCTGTCGACAACCACTGAAAATTAGGTATCTATGTCCAGGGCGGTGCG
GTGCCGTGGAAGGAGAAACCCGCCGGCGAGTTAGACACGATTCGTTTGAC
CCTCAGCGATGCGCCACCGAGCTGCACGAAAGGGGAGAGCTGGTGTGGGC
TTGCGCCGAGATAGCGCGAAAGGCTTTCCGGCTGGTGATGATGGTTCCAG
GAGGAGTTGTTCTGTCGCTTGCTGGCGCCCCTATTGCGGGAGGGAGAGAA
GTTGCGTGGCCTCAGGTACGCTCGTGAATGCGCCCAACTGTTACGATAGA
GTGCAGCACGGCTATCAGCGATACCATCAAGACCATTTTTTTACCGGGAG
GTAGGTCGTTGGTGCTCTAGTATTTTACCCGGCAAGGAAGCCCGGTTGAT
TTCCCTCGGTTCTTGGTTGGTTGAGGGCCATCCGTTGTCCTTTCCGGCTG
ACGCGCAACGGTTGGTAGGATGTCGCAGAGGACAGAGCGCTGATCAAGGC
CTCGTCCGAGTTGCAACGATGGTGGCGAGGGTGCATCAGCCGGAAGCGCA
CT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12427:32..1083+

>mRNA_Ecto-sp13_S_contig12427.2015.1 ID=mRNA_Ecto-sp13_S_contig12427.2015.1|Name=mRNA_Ecto-sp13_S_contig12427.2015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12427:32..1083+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTTCACGGTGAGCCTAGGGAAAGGCTGTCGCGGCTTGGACTTTGT
CGCGACCAGCAACAGCCCCACCGCAGACCCCATACTGAGAGGGTGCTGGG
AGTGCCAGGCGACTGACCGCGATATCGCCAGGTATCTATGTCCAGGGCGG
TGCGGTGCCGTGGAAGGAGAAACCCGCCGGCGAGTTAGACACGATTCGTT
TGACCCTCAGCGATGCGCCACCGAGCTGCACGAAAGGGGAGAGCTGGTGT
GGGCTTGCGCCGAGATAGCGCGAAAGGCTTTCCGGCTGGTGATGATGGTT
CCAGGAGGAGTTGTTCTGTCGCTTGCTGGCGCCCCTATTGCGGGAGGGAG
AGAAGTTGCGTGGCCTCAGGATGTCGCAGAGGACAGAGCGCTGATCAAGG
CCTCGTCCGAGTTGCAACGATGGTGGCGAGGGTGCATCAGCCGGAAGCGC
ACT
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