mRNA_Ecto-sp13_S_contig8684.20140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A6H5KMN8_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN8_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.660e-41 Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1
Query: 1 EVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 207
EVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGN+IMVDDTPRKMRFMDAGLVVVPEFTEA
Sbjct: 249 EVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNTIMVDDTPRKMRFMDAGLVVVPEFTEA 317
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A7S2D3W3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3W3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.030e-21 Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 4 VYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 207
+YDR +NA D G +WDT RD+ IWSTPG+ G GF GN+IM+DDT RKMR ++VVPEF EA
Sbjct: 27 IYDRDYNAEDKSGTKSWDTMRDMHRIWSTPGKIGYGFDAGNTIMIDDTMRKMRNFPDNVIVVPEFKEA 94
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A7S1XU20_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU20_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.250e-18 Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 4 VYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 204
+Y R FN DP G N+WDT RDL +W+ G+ G GF N+IMVDDTPRKMR M VPEF E
Sbjct: 127 IYPRAFNVADPQGKNSWDTHRDLAGVWAAQGKVGFGFSEANTIMVDDTPRKMRHMPRNAFFVPEFNE 193
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A7S3K1S4_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1S4_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.780e-17 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 4 VYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 204
+Y+R FN DP N+WDT RDL +WSTP R GF P N++++DDTPRKMR ++VVP FTE
Sbjct: 221 LYERVFNKPDPFAENSWDTMRDLEKLWSTPNRPAYGFNPTNTLVIDDTPRKMREHPHNVIVVPTFTE 287
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: F0XVF5_AURAN (FCP1 homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF5_AURAN) HSP 1 Score: 77.4 bits (189), Expect = 3.270e-15 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 1 EVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 207
++Y+R FN D G NAWDT RDLP +W TP + GF N++++DDT RKMR + ++VVP + EA
Sbjct: 230 DMYERKFNKDDASGENAWDTMRDLPKVWGTPAKAAHGFDETNTLVIDDTHRKMREYPSNVLVVPTYDEA 298
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A7S2CI38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI38_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.470e-15 Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 1 EVYDRPFNARDP-HGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEF 198
E+YDR FN +D GA WDT RD+ IW+T GR G GF N++MVDD+ RKMR LV++PEF
Sbjct: 243 EIYDRDFNKKDEWDGAKDWDTVRDMHKIWTTKGRAGYGFNARNTVMVDDSSRKMRQFPGNLVLIPEF 309
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A7S2RHV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHV1_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.010e-12 Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 EVYDRPFNARDP--HGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPE 195
++YDR FN D GA WDT RDL +WST + G GF N++MVDDTPRKMR V VPE
Sbjct: 300 DIYDREFNVADRGHDGAKHWDTMRDLERVWSTVDKVGNGFSWHNTVMVDDTPRKMRHSPQNAVFVPE 366
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A8J2WY59_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY59_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.650e-12 Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 1 EVYDRPFNARDPHGANAWDTTRDLPLIWST--PGRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 204
++Y+R FN DP GAN +DT RDLP +WS+ PG + GF N++++DDT RKMR + ++VVP F E
Sbjct: 362 DIYERKFNKADPTGANDYDTMRDLPSVWSSVKPG-SARGFTAENTVVIDDTLRKMRELPHNVLVVPPFEE 430
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A835ZE45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE45_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 6.070e-9 Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1
Query: 4 VYDRPFNARDPHGANAWDTTRDLPLIWSTPG--RTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFT 201
++DRPFNA DP GA +WDT RDL +W + R A + N++M++ PRK+R +V E T
Sbjct: 139 IFDRPFNAVDPTGAQSWDTVRDLQCVWQSAQARRMDAAYDATNTVMIESEPRKIRDCAENAIVPSECT 206
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Match: A0A0L0D347_THETB (FCP1 homology domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D347_THETB) HSP 1 Score: 53.5 bits (127), Expect = 1.300e-6 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 4 VYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGA-GFGPGNSIMVDDTPRKMRFMDAGLVVVPEF 198
V R N DP GA + DT RDL +W GA GFGP N+I+VD+ RK+R + +VVP F
Sbjct: 168 VLHRDHNKPDPTGAKSHDTIRDLGAVWGEEDGPGAAGFGPHNTIVVDNEFRKVREVPHNALVVPTF 233 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8684.20140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8684.20140.1 >prot_Ecto-sp13_S_contig8684.20140.1 ID=prot_Ecto-sp13_S_contig8684.20140.1|Name=mRNA_Ecto-sp13_S_contig8684.20140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp EVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNSIMVDDTPback to top mRNA from alignment at Ecto-sp13_S_contig8684:6405..6611- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8684.20140.1 ID=mRNA_Ecto-sp13_S_contig8684.20140.1|Name=mRNA_Ecto-sp13_S_contig8684.20140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8684:6405..6611- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8684:6405..6611- >mRNA_Ecto-sp13_S_contig8684.20140.1 ID=mRNA_Ecto-sp13_S_contig8684.20140.1|Name=mRNA_Ecto-sp13_S_contig8684.20140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8684:6405..6611- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |