mRNA_Ecto-sp13_S_contig868.20132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig868.20132.1
Unique NamemRNA_Ecto-sp13_S_contig868.20132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig868.20132.1 vs. uniprot
Match: D8LF29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF29_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 3.500e-68
Identity = 111/125 (88.80%), Postives = 113/125 (90.40%), Query Frame = 2 
Query:  287 HGHSLQDSQRVPPEPGGSNRCCGNIAHGLVATVREECSYNRDGDHGDVPVELPAASTTIVFAVNAGRPIPTRRFSDVVAAAEEHLRIDNRANEGRDQLQRPCVLAAFCDGSSIIYYTVSSGIDTS 661
            HG  LQDS RVPPEPGG+NRCCG IAHGLVATV EE + NRDGD GDVPVELPAASTTIVFAVNAGR IPTRRFSDVVAAAEE LRID RA EGRDQLQRPCVLAAFCDGSSIIYYTVSSGIDTS
Sbjct:   49 HGQPLQDSPRVPPEPGGNNRCCGKIAHGLVATVGEERNCNRDGDLGDVPVELPAASTTIVFAVNAGRTIPTRRFSDVVAAAEERLRIDFRATEGRDQLQRPCVLAAFCDGSSIIYYTVSSGIDTS 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig868.20132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF29_ECTSI3.500e-6888.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig868contigEcto-sp13_S_contig868:6042..10566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1318
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptiontRNA-splicing endonuclease subunit Sen15
Ec32 orthologEc-21_006500.1
Cds size606
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig868.20132.1prot_Ecto-sp13_S_contig868.20132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig868 6100..9912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464140.3817155-UTR-Ecto-sp13_S_contig868:6041..60991681464140.3817155-UTR-Ecto-sp13_S_contig868:6041..6099Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig868 6042..6099 +
1681464140.4500608-UTR-Ecto-sp13_S_contig868:9912..105661681464140.4500608-UTR-Ecto-sp13_S_contig868:9912..10566Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig868 9913..10566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464140.3949926-CDS-Ecto-sp13_S_contig868:6099..63261681464140.3949926-CDS-Ecto-sp13_S_contig868:6099..6326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 6100..6326 +
1681464140.4060519-CDS-Ecto-sp13_S_contig868:8863..90821681464140.4060519-CDS-Ecto-sp13_S_contig868:8863..9082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 8864..9082 +
1681464140.4181094-CDS-Ecto-sp13_S_contig868:9491..96141681464140.4181094-CDS-Ecto-sp13_S_contig868:9491..9614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 9492..9614 +
1681464140.4391186-CDS-Ecto-sp13_S_contig868:9875..99121681464140.4391186-CDS-Ecto-sp13_S_contig868:9875..9912Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 9876..9912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig868.20132.1

>prot_Ecto-sp13_S_contig868.20132.1 ID=prot_Ecto-sp13_S_contig868.20132.1|Name=mRNA_Ecto-sp13_S_contig868.20132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
MRRPFSKKRGAIDRRVSEITNHAPRRLLIPARSTSYRLSYGSGRGRGLKR
GRTTQSRWPHEENHCVTGKTRRCSPCHGHSLQDSQRVPPEPGGSNRCCGN
IAHGLVATVREECSYNRDGDHGDVPVELPAASTTIVFAVNAGRPIPTRRF
SDVVAAAEEHLRIDNRANEGRDQLQRPCVLAAFCDGSSIIYYTVSSGIDT
S*
back to top

mRNA from alignment at Ecto-sp13_S_contig868:6042..10566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig868.20132.1 ID=mRNA_Ecto-sp13_S_contig868.20132.1|Name=mRNA_Ecto-sp13_S_contig868.20132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig868:6042..10566+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCGCGGGTGTCTCAGACCAGTGAAGTACACGACCGAGACAGAGCGCT
TGCCGGCAATGCGGCGCCCCTTTTCGAAGAAACGCGGCGCAATTGACCGT
CGAGTTTCGGAGATCACAAATCACGCACCACGGCGTCTCCTAATTCCTGC
ACGTTCAACCTCCTATCGGCTCTCGTATGGCTCGGGAAGGGGGAGGGGGC
TGAAACGCGGAAGGACGACGCAGTCAAGATGGCCACACGAGGAGAATCAC
TGTGTCACTGGGAAGACTCGACGCTGCTCCCCGTGGTATGTTCATGTATA
TTTTGGTTGACCTTTTGCACACGACTGCTGCTACGGATTAGGGCACACCC
TGCGCCGCATTTTGGCTAGATTACGCCCACGACGAAGAGGAGGCATTCAT
GAAACAGTATTTTTTTAATTTTGTTAGACCATCTCTCGACGAGGCTATTC
AAACGCCGTCATTTTCGCCACCGCCACTCGTTGTACTGCTGCGGAGAAAT
CGAGCTTTGCACATCTCTCCAGGGGGTGTGATATCTTGTGTCATCGGGTG
TAATGCTGCGTTGTTGGTGATTGAACGTCCTGAAAATATTTGTTATTAGT
ATAGCTGTTGAAGGGGGGGATCAGAGCAAGGTTTGCAGCTTGTAAATTAC
GCGCACACCAATTACTAACGTGTTTGAACCCCACAAGGCTGTAACTTAAG
CGCCGTTTTCTTCGGGGGCGTAGGTTCTCTCTCACTGAGGGGGGTGTCCT
GCAAGGAATTATAATTCAGAGCCGTGGGACCTTCCCATGACTCCTCGAGA
CATATTTTTTCAGGGCTATACGTGGCGACTGCGTCGCCACGTGGGATGGG
AATGGTAAGAAAAACCCGCCGCAGGCGGAAAAACGCGTGGGCTTACCATC
AGCTTTGATGGGATGGGATCTCAATTTCTCGGATGCGAATGGGATGGGAT
GGGAAAGGGATTGTGCTTCACGCTGATGATATGGGATGGTATCAGCCAAT
CCTTGTTGCTGGGATGGCATGGTGACATACCAAGTTTTCGCTGGTCATGG
TGATGGTTTATTGATGGGTTTGATGTGTGCCGGGTTTGCCGTCTCTCCTG
TTCATCATGGCGAGGACACAGCAAAGCACAGCATTCACCTCGTTGCCAAT
AAGGCTCCTCATCTCCTCGTCGCATGCGTCATGTGAGCCTGATAGGTATC
ATACCCTTTTCATACGAAATGCTACGCCCCCAAATAAGAAGAGACCCACG
CAAAAACTACGGGCTGCTTTTTCCCATACACACCTTTCTTCGATGTCTTC
CCCGCTAGTCAAATAGCACACAGAGATGCACTTGGCACGCAACACAACTA
CCCAATAACAGAGCGACAACCCCCTCCCACCGAGGCATTCTGGGTTGCAA
CTAGCTGCTGCATCAGCGCTGGCATCGCATTTGGACCTCCTTGAAGCCGG
GAATGAGATGCCTGTTCAGCCGGAGCAGCAACATCATCTCGATCTTGTCG
GGAAGAATGCCGGCGGGCATGTCACTCAGGACGAGTTTAGTGCGGATGGG
TGCCATGTCGGGTGGGAGTGGCTGGGATGGGATATGCTTTTGTGATGGGA
GTGGCTGGCATGGGATAAGCCACTGTGATGGGAGTGTGGATTGGATGGGA
ACGACGTGGGAAATTCTAGATGGGATGGGATGGTACTCTGAATCCGATGG
GATGGTGATGGGATGGTAAACGTGATGGGATACAAAATCTCTTACCACAC
CACTACCATCCCTTTACCATACCATTACCATCAAATTTACCGTCCGGTCT
ATATCCACGTATAGCCCTGTATTTTTTCCCCAGTGGAAGAAAGGCCGATT
CAAGTTTTTGCGGGTCACAACATGTTTCAGTCCACGTTTTCGGCTCGTGT
GCGGCCAAGAGAGTGTGTATGACCGCACGCCATTGGATGCAGTTTGTGGG
TGTCGTCGGCCTACAAGGCCTCCCTATGGCATGCGTTTTTGAATAGTAGT
GGCACACGGAGCACGCACGCGGTGGAACAAGAAAGAAGTCCCTACAGTCA
ACACCGAAACACACTTAGGTTCACGTTTGCACGCCGTGTGGAATCAAAAC
TGAACAATACGCCATGTTTCTGGGACGCGAGCAGAGGGTATGTGTATGAC
GACACGCCATTGGCTCAAGACTGTGTATTTCGTCGGCCTAAGGCGTCCCT
CTGGCGTGCGTTGAGGACTTGTCACACCTGCGGCAAGCACAAAAAAGGCT
CTTTTTGGCCGAAAGGCAAGAACATCAGCAAAGCAACATGTCAGGGTTGA
CGTTTTCGAGACGCAGAACACCCTGAAGTTGAGACTCCTTCTGAGGGTTT
GTGTATGAGCTAACGATACTGGCCTCTGTTTGGGCAGCAGATGGTGTAGT
TCCTCGTTCTGGCACGATTAGGGTGTGACCCCCCCCCCCTTTTCCTAGCT
CGAAAGTATCAGCCGATCGAGTGAGAAAATTGCCTATTTTCTTACTCGCC
AGCTGGAATCCTTGGACATATTCGGGCTGTGAGAATTTAGGTCTTGGAAT
TTTGCCTTTTTCTTCAGCGTAAAAACTGCAAGTATTTTTCAGGCTACGAA
AATGATCCCCCCCCCCTTCCCCAATCCAAAACCCAGAAAACATGTTGCGT
AAGAAACCGCTCAAGAACGATCTCGAGCAAGCGCCTTCCTTGGTTCCGTA
GCTAATGTTTGCCTTTGCGTCCGAAAGGTGTACCAGGACCTCATGCGAAA
GAGCGGCTGGACAGGCGTTCGATCGACGATGCTACATCTCCCTCCCTGTG
TCTGCTGTCATCGGGACTCAAGCCATGGACATTCCCTGCAGGACTCGCAG
CGGGTACCACCAGAACCCGGAGGCAGTAATAGATGCTGCGGAAATATAGC
GCACGGACTAGTTGCCACTGTTCGGGAAGAATGCAGCTACAACCGCGACG
GCGATCATGGCGACGTCCCAGTGGAGCTGCCAGCTGCATCAACCACGATA
GTGTTCGCTGTAAACGCAGGACGCCCCATTCCGACGCGAAGGTTGGTGAA
GCTAGCAACGAAAAACACGATAGCTGAGGTGGGCTACAACCAAAAGCGTG
CCCCGCGCTGGGCAACCGAACAGGCGCTGTAGCTACCAACACCATCAACG
CCCTTCCGAGCACTGTAGATCGAAAGCCGGGAGAAGGTATGCTCATGCAT
CGTGAGCACAGGCCACCCCCGGAGGCGATGCTAAATCGTGCTGCTTGTTC
TGGAGTACGCTGAAAGCTGTTGGCTATGAGCAAAATCGGCTTGTCACACC
CGGGAAAGATGTACGAGTAATTGTCGAAGAGGAGGCCAAATTTAGCATTT
TAGGATAGCTCAAGCTGCTTTGACAGGACGTTCTCTTGAACCCCAGGCGC
TACGCCTGTACCCCGATTCGCTTGTCGATGTTGCTTTGCGTGTTCGGCAG
ATTCAGCGACGTCGTGGCGGCAGCGGAAGAACACCTGCGAATAGACAACC
GCGCAAATGAAGGGCGTGACCAACTGCAGCGACCATGCGTTCTGGCAGCC
TTCTGCGATGGATCGAGCATTATGTGAGCGTTTCCCCACGCAACTTCGCG
CGCTCGCCTTCTGCAACTTGTAGTCTCTTGCACATCCTTCAGTAGATTTC
GCTATCCATGATTGCAGGTATTCTGCTCAACAACTAGGTTTTCCGAGATT
TTTTTTGTCTCCCGCGCTCGAAATCTTAATGTTTGGAAGTGAAGAGTAAG
CCAAGAGAGTCATGGGTCACACCTGGAGTTCACCGTACGGTTTCTCCCTT
TTCGCTTCACGTGCCTGGTATCCCCTGCCCCCAGCTACTACACCGTGTCA
AGCGGAATTGATACTTCGTGATTCGTGCAAGATGGGTTTCGAAGCAAAGT
CGACTACCATCAACGTACGTCTAGCCGTGGCTGTGGCGAGGCTTGTATCT
GTTGGCGAAGACGAGCACACCCGAGGGACTATTGTGCGACGACTTGATGG
CACTTACCATCCTGATGGAGAGCTGTGGACACGCGGGAGGTATGGCGGCT
GCACAGGAAAGCTCAGAACTTCAGCCGATTTGTCTGGTGTTTGCTTTCAT
GGCGAAGTTTTCGTGCTGCGATTTCCAAGCGTCAGCGGCCTACCCCAATA
TCATTGAACGGACATCTGTGTAGACGGGCGCGGTATGCACAGCATACCCG
GAGTATTGCCCTTCCGCCCCCTGGTCCTCGCACCTCCTGACGGAGCGATC
CGCTTTTTGTAGGGGATGGAAATCGCCCGATGAGTGCACCAATACGCGTC
ACTCTGGGCTCTCGCTGGAATTGAAACGTGTGTCCCACACCTTTCCACGC
TTCTCTCGCGCGTAACTTCTCCCACTTGCATTCCTTGCCTCTTCCCACAC
GACTTTCAACATTTATTTACCCTCATGTTGCTGATTGGCGCCCATCCCGC
CCAGGTGATCTGGGGATTCAACGTCACGAACTGGCTGTCGCAGACGCAGT
ATTCAGCGTGTAATGGCGTATAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig868:6042..10566+

>mRNA_Ecto-sp13_S_contig868.20132.1 ID=mRNA_Ecto-sp13_S_contig868.20132.1|Name=mRNA_Ecto-sp13_S_contig868.20132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig868:6042..10566+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCGCCCCTTTTCGAAGAAACGCGGCGCAATTGACCGTCGAGTTTC
GGAGATCACAAATCACGCACCACGGCGTCTCCTAATTCCTGCACGTTCAA
CCTCCTATCGGCTCTCGTATGGCTCGGGAAGGGGGAGGGGGCTGAAACGC
GGAAGGACGACGCAGTCAAGATGGCCACACGAGGAGAATCACTGTGTCAC
TGGGAAGACTCGACGCTGCTCCCCGTGCCATGGACATTCCCTGCAGGACT
CGCAGCGGGTACCACCAGAACCCGGAGGCAGTAATAGATGCTGCGGAAAT
ATAGCGCACGGACTAGTTGCCACTGTTCGGGAAGAATGCAGCTACAACCG
CGACGGCGATCATGGCGACGTCCCAGTGGAGCTGCCAGCTGCATCAACCA
CGATAGTGTTCGCTGTAAACGCAGGACGCCCCATTCCGACGCGAAGATTC
AGCGACGTCGTGGCGGCAGCGGAAGAACACCTGCGAATAGACAACCGCGC
AAATGAAGGGCGTGACCAACTGCAGCGACCATGCGTTCTGGCAGCCTTCT
GCGATGGATCGAGCATTATCTACTACACCGTGTCAAGCGGAATTGATACT
TCGTGA
back to top