mRNA_Ecto-sp13_S_contig12421.2010.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12421.2010.1
Unique NamemRNA_Ecto-sp13_S_contig12421.2010.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: D8LES8_ECTSI (Similar to sirtuin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES8_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.130e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQVCV 180
            GVVKPDITFFGERLPASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV V
Sbjct:  198 GVVKPDITFFGERLPASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQVLV 257          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: A0A0G4M9Y7_9PEZI (Deacetylase sirtuin-type domain-containing protein (Fragment) n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4M9Y7_9PEZI)

HSP 1 Score: 75.5 bits (184), Expect = 1.980e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 GVVKPDITFFGERLP-ASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQVCV 180
            GV+KPDITFFGE LP A  +R    D  + DL LV+GTSLKV PVS I+ ++PPHVPQ+C+
Sbjct:   78 GVMKPDITFFGEGLPDAFGRRLAGHDRDRVDLVLVIGTSLKVTPVSEIVSWLPPHVPQLCI 138          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: UPI001B36BE37 (uncharacterized protein n=1 Tax=Cryphonectria parasitica EP155 TaxID=660469 RepID=UPI001B36BE37)

HSP 1 Score: 77.4 bits (189), Expect = 3.390e-15
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 GVVKPDITFFGERLP-ASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV 174
            G++KPDITFFGE LP A  +R VE D  K DL +V+GTSLKV PVS ++ FIPPH+PQ+
Sbjct:  329 GIMKPDITFFGEALPDAFSRRLVEEDRFKTDLVVVIGTSLKVAPVSELVPFIPPHIPQI 387          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: G9NGS9_HYPAI (Deacetylase sirtuin-type domain-containing protein n=5 Tax=Trichoderma TaxID=5543 RepID=G9NGS9_HYPAI)

HSP 1 Score: 76.6 bits (187), Expect = 6.700e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASV-KRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQVCV 180
            GV+KPDITFFGE LP    +R  E D  K DL +V+GTSLKV PVS I+ F+PPH+PQ+ V
Sbjct:  365 GVMKPDITFFGEALPDEFSRRLTENDRDKVDLVIVIGTSLKVTPVSEIVSFLPPHIPQIYV 425          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: A0A2T4C3Z7_TRILO (DHS-like NAD/FAD-binding domain-containing protein (Fragment) n=1 Tax=Trichoderma longibrachiatum ATCC 18648 TaxID=983965 RepID=A0A2T4C3Z7_TRILO)

HSP 1 Score: 75.9 bits (185), Expect = 7.690e-15
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASV-KRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV 174
            GV+KPDITFFGE LP    +R  E D  K DL +V+GTSLKV PVS I  F+PPH+PQ+
Sbjct:  173 GVMKPDITFFGEELPDEFSRRLTENDRDKVDLVIVIGTSLKVTPVSEIASFLPPHIPQI 231          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: A0A7S1Z3V2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3V2_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 8.240e-15
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQVCV 180
            GV++P +TFFGE L +SV+R +E D  KAD  LV+GTSL V P+SR+++F+ P VP++ +
Sbjct:    4 GVLRPAVTFFGETLDSSVRRKLERDRDKADALLVMGTSLSVAPMSRVIEFLSPSVPRILI 63          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: A0A3N4M5U3_9PEZI (Chromatin regulatory protein Sir2 n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4M5U3_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 9.120e-15
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASVK-RAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV 174
            GV+KPDITFFGE+LPAS   R ++ D +K DL + +GTSLKV PVS I+ F+PP+VPQ+
Sbjct:  391 GVMKPDITFFGEQLPASFHDRLIDHDREKCDLLICIGTSLKVAPVSEIIGFLPPNVPQI 449          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: A0A3N4JMD5_9PEZI (SIR2-domain-containing protein n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4JMD5_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 9.120e-15
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASV-KRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV 174
            GV+KPDI FFGE+LPA+  KR V+ D  + DLF+ +GTSLKV PVS I+  +PPH+PQ+
Sbjct:  374 GVMKPDIIFFGEQLPATFNKRLVDHDRSRCDLFICIGTSLKVAPVSEIIGILPPHIPQI 432          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: G9N617_HYPVG (Deacetylase sirtuin-type domain-containing protein n=7 Tax=Trichoderma TaxID=5543 RepID=G9N617_HYPVG)

HSP 1 Score: 76.3 bits (186), Expect = 9.170e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASV-KRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV 174
            GV+KPDITFFGE LP    +R  E D  K DL +V+GTSLKV PVS I+ F+PPH+PQ+
Sbjct:  365 GVMKPDITFFGEALPDEFSRRLTENDRDKVDLVIVIGTSLKVTPVSEIVSFLPPHIPQI 423          
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Match: A0A8K0LDC5_9PEZI (SIR2-like protein n=1 Tax=Chaetomium sp. MPI-SDFR-AT-0129 TaxID=2823209 RepID=A0A8K0LDC5_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 9.200e-15
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 GVVKPDITFFGERLPASV-KRAVEADHKKADLFLVLGTSLKVQPVSRILQFIPPHVPQV 174
            GV+KPDITFFGE LP    +R  E D +K DL +V+GTSLKV PVS ++ F+PPH+PQ+
Sbjct:  397 GVMKPDITFFGEALPDEFSRRLTEHDREKVDLVIVIGTSLKVAPVSEVVPFLPPHIPQI 455          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12421.2010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES8_ECTSI2.130e-3098.33Similar to sirtuin n=1 Tax=Ectocarpus siliculosus ... [more]
A0A0G4M9Y7_9PEZI1.980e-1560.66Deacetylase sirtuin-type domain-containing protein... [more]
UPI001B36BE373.390e-1562.71uncharacterized protein n=1 Tax=Cryphonectria para... [more]
G9NGS9_HYPAI6.700e-1560.66Deacetylase sirtuin-type domain-containing protein... [more]
A0A2T4C3Z7_TRILO7.690e-1561.02DHS-like NAD/FAD-binding domain-containing protein... [more]
A0A7S1Z3V2_TRICV8.240e-1551.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A3N4M5U3_9PEZI9.120e-1561.02Chromatin regulatory protein Sir2 n=1 Tax=Terfezia... [more]
A0A3N4JMD5_9PEZI9.120e-1559.32SIR2-domain-containing protein n=1 Tax=Choiromyces... [more]
G9N617_HYPVG9.170e-1561.02Deacetylase sirtuin-type domain-containing protein... [more]
A0A8K0LDC5_9PEZI9.200e-1559.32SIR2-like protein n=1 Tax=Chaetomium sp. MPI-SDFR-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12421contigEcto-sp13_S_contig12421:3594..4627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.5
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D8LES8
Model size180
KEGG rclassRC00033,RC00096,RC00485
KEGG koko:K11121,ko:K11411
KEGG ReactionR00102,R10633
KEGG Pathwayko00760,ko01100,ko04068,ko04152,ko04211,ko04212,ko04213,ko04218,ko04922,ko05031,ko05206,map00760,map01100,map04068,map04152,map04211,map04212,map04213,map04218,map04922,map05031,map05206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.NAD binding
EggNOG OGsCOG0846@1,KOG2684@2759
Cds size180
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.3717284-CDS-Ecto-sp13_S_contig12421:3593..36771681462661.3717284-CDS-Ecto-sp13_S_contig12421:3593..3677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12421 3594..3677 +
1681462661.3858204-CDS-Ecto-sp13_S_contig12421:4531..46271681462661.3858204-CDS-Ecto-sp13_S_contig12421:4531..4627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12421 4532..4627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12421.2010.1prot_Ecto-sp13_S_contig12421.2010.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12421 3594..4627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12421.2010.1

>prot_Ecto-sp13_S_contig12421.2010.1 ID=prot_Ecto-sp13_S_contig12421.2010.1|Name=mRNA_Ecto-sp13_S_contig12421.2010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
GVVKPDITFFGERLPASVKRAVEADHKKADLFLVLGTSLKVQPVSRILQF
IPPHVPQVCV
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mRNA from alignment at Ecto-sp13_S_contig12421:3594..4627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12421.2010.1 ID=mRNA_Ecto-sp13_S_contig12421.2010.1|Name=mRNA_Ecto-sp13_S_contig12421.2010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12421:3594..4627+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTAGTGAAGCCGGACATCACCTTCTTCGGGGAGCGTCTTCCGGCGAG CGTCAAGCGCGCGGTCGAGGCGGATCACAAGAAGGTGCAGCGGGGGTGCC GTAGGGTGGAGGAGGGGGGGACGTGTTCATGTTTTGCATGCCTTAGTTGA TAGACCATTGACCACAGTATTAGCAGGGTAGAGAGCTTATAGTATCGGGG AATATATGTGGTTGCATGGCCTTGTTCGTGTTCCTCAATTGACGGTTGTT GTATGTCCCAAGACCCCGTTTCGGATGATAGTTTTATTCGATTGCTCCGC TACCGAGAGGGTGTCAGTGCCGAACGACACCCATTCGGAAAGCTACCGAT GACATCTTTCCGAGTGCTTTCCGTTTCCGACACTGGAAATTCTTCCCCTG TCGACTGAGTTATCGAGCTTTGAGGCTCTCCCTACGGCATCTGATATCCA TCGCCGGACAATGCAGTCTTTCGTTCTGGTCATGTTGTTTTCAGCCCGTT GTCTTGGACCCGTGGGCATAAAAAGAGGGCACCAGTACGATCTCAATTGT TTATGTTCGGAAGAACGTCAACCCCTGCCTATTTCGAGATTTAAAGTAGT AGGCGTTTGATCGCGGTTTACGGCAAAGGTGGGGGTGTCATTTCGCTCTC GCGGACCTCTTCCCACACACACCGTGTTCTCACGCTCTTGGAGGAACGTA ATTTTTTATGCGGTTTCCCGGGGTTGGTCTGGTCTTGAGTACCTTTGATG AACACAATTTTCGGAAAACGTAACCCGGAAAGTAGCTCCGAGATCCGACC AACCGGCAGGTGGGGCTGTTGAACCTCTTTTTTTTTTTATCCAGCCAAGC GTTTGTGGTTCTGCAGCACAACGGGTTGGTTTGACTGGTTGCCCACATAC CGCGATTATTTTTGCTGCCCTCTTTTTCGTTATGTTAGGCGGACCTTTTC CTCGTGCTGGGGACGTCGCTCAAGGTGCAGCCGGTCTCGAGGATTCTTCA GTTCATTCCTCCGCACGTCCCCCAGGTTTGTGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12421:3594..4627+

>mRNA_Ecto-sp13_S_contig12421.2010.1 ID=mRNA_Ecto-sp13_S_contig12421.2010.1|Name=mRNA_Ecto-sp13_S_contig12421.2010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12421:3594..4627+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTAGTGAAGCCGGACATCACCTTCTTCGGGGAGCGTCTTCCGGCGAG
CGTCAAGCGCGCGGTCGAGGCGGATCACAAGAAGGCGGACCTTTTCCTCG
TGCTGGGGACGTCGCTCAAGGTGCAGCCGGTCTCGAGGATTCTTCAGTTC
ATTCCTCCGCACGTCCCCCAGGTTTGTGTA
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