mRNA_Ecto-sp13_S_contig865.20089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig865.20089.1
Unique NamemRNA_Ecto-sp13_S_contig865.20089.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.080e-46
Identity = 100/162 (61.73%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  290 GIEKMLYALAQKMCGTFGTCGGATLSPRRPPSTTTFWT*SLL----APATYLKESAPKWRMRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            G  KMLYALAQK CG FGTCGGA        + T      +L    A + YL E         +  +VQL TV L+Q TLRYLYR +PASD+DG+ +H AEL +FAAAILPLI+ECS DVAH VRSNS+IDSE+A +SAGFVAVKEELESIYSCLGMTCDQV
Sbjct:  562 GDGKMLYALAQKRCGNFGTCGGAD-----GITGTAAINDDILELIGAGSGYLLEGKCAEAEEAKESIVQLMTVPLVQATLRYLYRADPASDYDGDAKHWAELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAPVSAGFVAVKEELESIYSCLGMTCDQV 718          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: D8LDE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.990e-44
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 2
Query:  410 LLAPATYLKESAPKWRMRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            ++A + YL E         +GR+VQL  V LLQGTLRYLYR +PASD+DG+ +H AEL +FAAAILPLI+ECS DVAH VRSNS+IDSE+A +SAG VAVK+ELESIYSCLGMTCDQV
Sbjct:   64 IVAGSGYLLEGKCAEAEDAQGRIVQLMAVLLLQGTLRYLYRADPASDYDGDAKHWAELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAPVSAGLVAVKKELESIYSCLGMTCDQV 181          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.070e-21
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  302 MLYALAQKMCGTFGTCGGATLSPRRPPSTTTFWT*SLLAPA-----TYLKESAPKWRMRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            MLYALA+K C  F TC   T        T T    S +         YL +         + +++ L  V L+QG LRY Y  +P +  DG  +  AEL +F+AA+LP INEC E+VA +VR+N++I S  A +S G+V +KE+LES+YSC+G++C QV
Sbjct:  202 MLYALAEKRCENFATC---TADDDGSDITGTAQVNSDMLELYKEGQVYLLDGDCGAAGDVKDKIIDLMGVPLVQGMLRYFYNADPEAG-DGGDKAAAELWAFSAAMLPRINECDEEVATLVRANTDIASADAPMSEGYVFLKEQLESVYSCMGISCSQV 356          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.080e-19
Identity = 63/164 (38.41%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  290 GIEKMLYALAQKMCGTFGTCGG------ATLSPRRPPSTTTFWT*SLLAPATYLKESAPKWRMRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            G  +M+YALA+K C  FGTC G      AT          T W    +  A  L E   +     + ++V L  V L+QG LRY Y  +PA    G+ E  AEL +F+A+ILP I+ C   V   VR N+ + S  A ++ G+ A+K +LE++YSC+G+TC QV
Sbjct: 1307 GDGQMIYALAEKRCENFGTCSGDTDGSDATGVSAINSELLTLWE---VGKANLLAEECTEASAVID-QIVPLMAVPLIQGLLRYTYLADPAIGTGGDKE-AAELWAFSASILPWISACDAAVGTAVRDNTELGSASAPMADGYAAIKTQLETVYSCMGITCAQV 1465          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: A0A7S2V1S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.800e-19
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  290 GIEKMLYALAQKMCGTFGTCGG--ATLSPRRPPSTTTFWT*SLLAPATYLKESAPKWRMRR-EGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            G   +LY+LA K C  FGTC G   + + +   +        L    +    +     + + +  +V   T+ L+QGTLRYLY+ +P   ++GN + RAEL +F+AA+LP I EC   VA ++R NS I  +   +  G+VAVKE LE+ YSCLG  C  V
Sbjct:  427 GDGNLLYSLADKRCANFGTCTGDVGSSNSQSGRAAVNERIIDLFRDGSVKLHNGDCGEVEKVKNAIVDQMTIPLVQGTLRYLYKADPKGANEGN-KARAELWAFSAAVLPRIAECDSGVASMLRENSYIGKD--PMKDGYVAVKEALETTYSCLGFMCSDV 584          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.560e-18
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 2
Query:  302 MLYALAQKMCGTFGTCGG------ATLSPRRPPSTTTFWT*SLLAPATYLKESAPKWRMRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            M+YALA+K C  FGTC G      AT          T W       A  L     +     +  ++ L  V L+QG LRY Y  +PA    G+ E  AEL +F+AAILP I+ C   V   VR N+ + S  A ++ G+ A+K +LES+YSC+G+TC QV
Sbjct:    1 MIYALAEKRCENFGTCTGDSDGSDATGVSAINSELLTLWE---TGQANLLAGECTEASAVIDE-ILPLMAVPLIQGLLRYTYLADPAIGTGGDKE-AAELWAFSAAILPWISACDAAVGTTVRDNTELGSASAPMADGYAAIKVQLESVYSCMGITCAQV 155          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: A0A6T1L9M0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1L9M0_9DINO)

HSP 1 Score: 82.4 bits (202), Expect = 2.920e-14
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  299 KMLYALAQKMCGTFGTCGGATLSPRRPPSTTTFWT*SLLAPATYLKESAPKWRMRR----EGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            K+LY LA K CG FGTCG          ST T     ++   T  K    + +       + R+V+L +V L+QG+LRY Y+V+      G ++ RAE   F+AA+LP +  C    A  +  N    +  + +S+GF AVK   ES Y+CLG+TC+ +
Sbjct:  320 KLLYRLAVKRCGNFGTCG----------STGTGVNALIMEQFTRGKNKLLQSKCVEVVPIKRRIVELMSVPLVQGSLRYAYKVDKLQ---GGSKERAEGDVFSAAVLPRVAACDVGAAQTISDNLAYAAT-SPMSSGFAAVKAAFESTYACLGVTCEDI 464          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: F0Y9I4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9I4_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-13
Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 2
Query:  290 GIEKMLYALAQKMCGTFGTCGGATLSPRRPPSTTTFWT*SLLAPATYLKESAPKW------RMRRE-GRVVQLTTVSLLQGTLRYLYRVNPASDHDGNT-----EHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTC 754
            G  +MLY LA+K C  FGTC   T    +          + L    Y ++   K        ++ E   +V+  TV L+QG L+Y ++ +PA+     T     +  AE  +FAAA+LP ++EC   VA ++ +N ++ +       GF   KE +ES+YSC+G+TC
Sbjct: 3576 GSGQMLYQLAEKRCADFGTCVSGTSGEAK----------ANLKALAYAEQGRDKILDGDCVTVQFEFDEIVKQLTVPLVQGMLKYAFKSDPANSQGSCTSGSCPKEWAEGWAFAAAVLPQVHECDHTVASMIVANLDVMNSDPMSENGFEEFKESVESVYSCMGITC 3732          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: A0A7S0H741_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0H741_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 6.890e-13
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  299 KMLYALAQKMCGTFGTCG-GATLSPRRPPSTTTFWT*SLLAPATYLKESAPKWRMRRE-GRVVQLTTVSLLQGTLRYLYRVNPASDHDG-----NTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNID------SEYAQISAGFVAVKEELESIYSCLGMTCDQV 763
            K+LY LA+K C  FGTC  GA  S     ++  F    L A    L ++     +R    +VV+L TV L+QG LRY Y+V      D       +++ AE  +FAAA+LPL++ C+   A  V +N          +  + + + F AVK   E++Y+CLG+TC QV
Sbjct:   52 KLLYRLAEKRCKNFGTCALGA--SGTSHVNSELF---ELFASGRDLLQNGDCSSVRPVVNQVVRLMTVPLVQGALRYAYKVGKTGGVDNIPKDQTSKNAAEGATFAAAVLPLVHACNTASADTVSANLKFGLFPTGGAVESTLYSNFTAVKTAFENVYACLGITCAQV 214          
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Match: A0A7S0UJ53_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJ53_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.170e-13
Identity = 53/153 (34.64%), Postives = 71/153 (46.41%), Query Frame = 2
Query:  290 GIEKMLYALAQKMCGTFGTCGGATLSPRRPPSTTTFWT*SLLAPATYLKESAPKWRMRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAILPLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGM 748
            G  K+LYALA K C  F TCG                       A  L ++        + R+ ++ TV L+QG LRY Y  +     D   E  AE  +FAA+ILP+I+ C ED A  V  N    S+       F  VK+ LES+YSC+G+
Sbjct:  320 GSGKLLYALADKRCQNFKTCGDLAKETEGTSHVNIEIFREFALGARLLSQAKCDEARVHKERIERMMTVPLIQGVLRYAYITSTDEVVDEKAE--AEGATFAASILPIIHACDEDAAQTVYENIKTQSD----GTDFAKVKKALESVYSCMGV 466          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig865.20089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE3_ECTSI1.080e-4661.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDE2_ECTSI4.990e-4467.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFX4_ECTSI1.070e-2140.88Probable high CO2 inducible periplasmic protein n=... [more]
D8LQ42_ECTSI2.080e-1938.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V1S6_9STRA5.800e-1937.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KYS6_9PHAE8.560e-1838.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6T1L9M0_9DINO2.920e-1435.22Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
F0Y9I4_AURAN1.850e-1331.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0H741_9EUKA6.890e-1335.12Hypothetical protein (Fragment) n=2 Tax=Phaeocysti... [more]
A0A7S0UJ53_9STRA8.170e-1334.64Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig865contigEcto-sp13_S_contig865:2062..3201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score153.7
Seed ortholog evalue4.8e-35
Seed eggNOG ortholog2880.D8LDE3
Model size769
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionWSC-domain containing protein
Ec32 orthologEc-15_000940.1
EC3.2.1.37
Cds size312
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.2261617-CDS-Ecto-sp13_S_contig865:2061..23141681464137.2261617-CDS-Ecto-sp13_S_contig865:2061..2314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig865 2062..2314 -
1681464137.2390018-CDS-Ecto-sp13_S_contig865:2568..26271681464137.2390018-CDS-Ecto-sp13_S_contig865:2568..2627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig865 2569..2627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.251313-UTR-Ecto-sp13_S_contig865:2627..28781681464137.251313-UTR-Ecto-sp13_S_contig865:2627..2878Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig865 2628..2878 -
1681464137.2676291-UTR-Ecto-sp13_S_contig865:2995..32011681464137.2676291-UTR-Ecto-sp13_S_contig865:2995..3201Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig865 2996..3201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig865.20089.1prot_Ecto-sp13_S_contig865.20089.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig865 2062..2627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig865.20089.1

>prot_Ecto-sp13_S_contig865.20089.1 ID=prot_Ecto-sp13_S_contig865.20089.1|Name=mRNA_Ecto-sp13_S_contig865.20089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MRREGRVVQLTTVSLLQGTLRYLYRVNPASDHDGNTEHRAELCSFAAAIL
PLINECSEDVAHVVRSNSNIDSEYAQISAGFVAVKEELESIYSCLGMTCD
QVR*
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mRNA from alignment at Ecto-sp13_S_contig865:2062..3201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig865.20089.1 ID=mRNA_Ecto-sp13_S_contig865.20089.1|Name=mRNA_Ecto-sp13_S_contig865.20089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig865:2062..3201- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATGCCTCCCTCTCGTCGAACCCTACGTCTGCCTCGCGTACACCCTACA CTGCATCCTGACCAACTGTTCTACCCTCGTGAACAACGTGTGGGCGGCAC TTGGCGTAGACTACACTGCTTCTGATGGAAGCCCCCAACACTGGGACGAA GCCTGGGCGTTCTACGCCGGCTCTCTCGAGGCGAGTCGGGCAACGTCGAC GGGAATGTGAGTAGCAACGGACGGATTCATGAATCCTCTTGCTTGGTTCC GTTTCACCAATTGATTTTTCACGGAACCTATCACTTATTACCGACGATGG CGTCCACGATTTCGTGTACATAGATATCCCTCAATGATTGGAGGACGGCC TGCTCTGCTCGACCCGATTGCTCCGCGCACGCGGTTCTCCCTGTATATCT GTGTGTGGCATTGAAAAAATGCTGTACGCCCTGGCGCAGAAGATGTGCGG CACCTTCGGGACTTGCGGCGGCGCAACGCTGTCACCGAGACGGCCGCCAT CAACGACGACGTTCTGGACTTGATCGCTGCTGGCTCCGGCTACCTACTTG AAGGAAAGTGCGCCGAAGTGGAGGATGCGCAGAGAGGGGAGGGTCGTCCA GCTAACAACTGTCTCGCTGCTCCAGGGCACCCTGTCCACAAAAATATATT TATGGTCCTTGCTACAGCATCTGCATGGGTCCCCATGTATTGTAGAGCTA CGTAACACATGCACAAAAGCTAAGAAACAGGCCACCTGCCTCGACGGCCG GGATGCATGAGCTAGACGAAGACCAAGGCGTCGAACGGTACGTGGCTGCT GTTTCGGTGTCGGTGCAAACGTTTTCTTCGCTGTCCTGCCCGCAATACCA ACCTTGACCTACACACCCAACATGGCCGCCGCCACAGCAGATACCTCTAC CGGGTGAACCCAGCTAGCGACCATGACGGCAACACCGAGCATCGGGCCGA GCTCTGCTCGTTCGCCGCAGCAATCCTGCCGCTCATCAACGAGTGTTCAG AGGACGTGGCCCACGTCGTCAGGTCTAACTCGAACATCGACAGCGAATAC GCCCAGATATCCGCCGGCTTCGTCGCCGTGAAGGAGGAGCTCGAGAGTAT CTACTCTTGCTTGGGCATGACGTGCGACCAGGTGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig865:2062..3201-

>mRNA_Ecto-sp13_S_contig865.20089.1 ID=mRNA_Ecto-sp13_S_contig865.20089.1|Name=mRNA_Ecto-sp13_S_contig865.20089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig865:2062..3201- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAGAGAGGGGAGGGTCGTCCAGCTAACAACTGTCTCGCTGCTCCA
GGGCACCCTCAGATACCTCTACCGGGTGAACCCAGCTAGCGACCATGACG
GCAACACCGAGCATCGGGCCGAGCTCTGCTCGTTCGCCGCAGCAATCCTG
CCGCTCATCAACGAGTGTTCAGAGGACGTGGCCCACGTCGTCAGGTCTAA
CTCGAACATCGACAGCGAATACGCCCAGATATCCGCCGGCTTCGTCGCCG
TGAAGGAGGAGCTCGAGAGTATCTACTCTTGCTTGGGCATGACGTGCGAC
CAGGTGAGGTGA
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