mRNA_Ecto-sp13_S_contig86359.20077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86359.20077.1
Unique NamemRNA_Ecto-sp13_S_contig86359.20077.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86359.20077.1 vs. uniprot
Match: D7FR33_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR33_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.280e-17
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPSESA 108
            ALGEPLRLALAQSGVEWIDNR+PSE+WPTLKPSESA
Sbjct:   13 ALGEPLRLALAQSGVEWIDNRLPSEEWPTLKPSESA 48
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86359.20077.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.760e-14
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPS 99
            ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKP+
Sbjct:   13 ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPT 45
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86359.20077.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.800e-10
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPS 99
            ALGE LRLALAQSGVEWIDNRV  E+WPTLKP+
Sbjct:   13 ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPT 45
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86359.20077.1 vs. uniprot
Match: V5GZQ6_ANOGL (Glutathione S-transferase n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GZQ6_ANOGL)

HSP 1 Score: 47.4 bits (111), Expect = 3.050e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPS 99
            ALGEP+R  L+  G+E+ DNR+  E WPTL+PS
Sbjct:   14 ALGEPIRFLLSYGGMEFEDNRIQKESWPTLRPS 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86359.20077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR33_ECTSI3.280e-1794.44Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LHF0_ECTSI3.760e-1496.97Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI1.800e-1084.85Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
V5GZQ6_ANOGL3.050e-557.58Glutathione S-transferase n=2 Tax=Anoplophora glab... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86359contigEcto-sp13_S_contig86359:311..421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionGlutathione S-transferase
Ec32 orthologEc-09_003670.1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.2706609-CDS-Ecto-sp13_S_contig86359:310..4211681464136.2706609-CDS-Ecto-sp13_S_contig86359:310..421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86359 311..421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86359.20077.1prot_Ecto-sp13_S_contig86359.20077.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86359 311..421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86359.20077.1

>prot_Ecto-sp13_S_contig86359.20077.1 ID=prot_Ecto-sp13_S_contig86359.20077.1|Name=mRNA_Ecto-sp13_S_contig86359.20077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPSESA*
back to top

mRNA from alignment at Ecto-sp13_S_contig86359:311..421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86359.20077.1 ID=mRNA_Ecto-sp13_S_contig86359.20077.1|Name=mRNA_Ecto-sp13_S_contig86359.20077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86359:311..421- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGGGTGAACCACTGAGACTGGCGCTGGCACAAAGCGGGGTTGAATG
GATCGACAACAGGGTGCCGAGTGAGCAGTGGCCCACTCTCAAGCCGAGTG
AGTCTGCTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86359:311..421-

>mRNA_Ecto-sp13_S_contig86359.20077.1 ID=mRNA_Ecto-sp13_S_contig86359.20077.1|Name=mRNA_Ecto-sp13_S_contig86359.20077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86359:311..421- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGGGTGAACCACTGAGACTGGCGCTGGCACAAAGCGGGGTTGAATG
GATCGACAACAGGGTGCCGAGTGAGCAGTGGCCCACTCTCAAGCCGAGTG
AGTCTGCTTAG
back to top