mRNA_Ecto-sp13_S_contig86340.20076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86340.20076.1
Unique NamemRNA_Ecto-sp13_S_contig86340.20076.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86340.20076.1 vs. uniprot
Match: UPI0015BB476C (hypothetical protein n=1 Tax=Galbibacter sp. BG1 TaxID=1170699 RepID=UPI0015BB476C)

HSP 1 Score: 213 bits (541), Expect = 1.620e-67
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 1 
Query:    1 FYDCKISGLMKNPILNDIHPKIKNNETVFKNCDLTNLTFQNVSLYGKNVFENTILPASGIRLYDNTDDKLIERAEQVCGNIESNDKIESEVIFRRNLKQGQNPIILDDLFLESFFKTEKSRNIFKNIVKGYELN 402
            FYDC++SGLMKN ILND H KI NNETVFKNCDL+ L F+NV++YGKN+F N ILP  GIRL+DN DDKLIERAE+ CG IES+DKIESEVIFR+ LKQGQNPIILD+LFLESFFKTE SR IF++IV GYELN
Sbjct:  100 FYDCQLSGLMKNSILNDEHAKIINNETVFKNCDLSGLIFENVNVYGKNIFNNCILPNKGIRLFDNKDDKLIERAERYCGEIESDDKIESEVIFRKTLKQGQNPIILDELFLESFFKTENSRRIFEDIVNGYELN 233
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BLAST of mRNA_Ecto-sp13_S_contig86340.20076.1 vs. uniprot
Match: UPI001F4318C3 (hypothetical protein n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F4318C3)

HSP 1 Score: 194 bits (492), Expect = 3.680e-60
Identity = 92/133 (69.17%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:    1 FYDCKISGLMKNPILNDIHPKIKNNETVFKNCDLTNLTFQNVSLYGKNVFENTILPASGIRLYDNTDDKLIERAEQVCGNIESNDKIESEVIFRRNLKQGQNPIILDDLFLESFFKTEKSRNIFKNIVKGYEL 399
            F++C +SGLMKNPILND H KI NNETVFKNCDLT+LTF NV++YGK VF+N  LP SGIRL+DN +DKLI RAEQ+C ++ ++DKIESE+IF+R+LK GQNP+ILD+LFLESFFKT  SR IF+ I+ GYE+
Sbjct:   99 FHNCFMSGLMKNPILNDEHSKIHNNETVFKNCDLTDLTFDNVTIYGKEVFDNCKLPNSGIRLFDNLNDKLITRAEQICEDLNTDDKIESEMIFKRDLKTGQNPLILDNLFLESFFKTVNSRKIFEEIINGYEI 231
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BLAST of mRNA_Ecto-sp13_S_contig86340.20076.1 vs. uniprot
Match: A0A7Y7BCR3_9BACT (Uncharacterized protein n=1 Tax=Cytophagia bacterium TaxID=2026730 RepID=A0A7Y7BCR3_9BACT)

HSP 1 Score: 162 bits (410), Expect = 1.030e-47
Identity = 77/134 (57.46%), Postives = 105/134 (78.36%), Query Frame = 1 
Query:    1 FYDCKISGLMKNPILNDIHPKIKNNETVFKNCDLTNLTFQNVSLYGKNVFENTILPASGIRLYDNTDDKLIERAEQVCGNIESNDKIESEVIFRRNLKQGQNPIILDDLFLESFFKTEKSRNIFKNIVKGYELN 402
            F+ C+ SG MKN IL D   K K  ET F  CD + LTF ++++YGKN+F+N +LP +GIRLY N++D+LI+R+E +C +I+++ KIESEVIFRR++  GQ+PII+DDLFLESFFKT +SR IF  IV+GY+LN
Sbjct:  101 FHKCEFSGSMKNHILYDKSSKFKGWETEFIECDFSQLTFDHLNIYGKNIFKNCVLPKNGIRLYRNSNDELIQRSEDICSHIDTDHKIESEVIFRRSMMTGQDPIIIDDLFLESFFKTVESRRIFDEIVEGYQLN 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86340.20076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0015BB476C1.620e-6776.87hypothetical protein n=1 Tax=Galbibacter sp. BG1 T... [more]
UPI001F4318C33.680e-6069.17hypothetical protein n=1 Tax=Fulvivirga sp. W9P-11... [more]
A0A7Y7BCR3_9BACT1.030e-4757.46Uncharacterized protein n=1 Tax=Cytophagia bacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86340contigEcto-sp13_S_contig86340:166..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.2256305-CDS-Ecto-sp13_S_contig86340:165..5431681464136.2256305-CDS-Ecto-sp13_S_contig86340:165..543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86340 166..543 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.2377768-UTR-Ecto-sp13_S_contig86340:543..5701681464136.2377768-UTR-Ecto-sp13_S_contig86340:543..570Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86340 544..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86340.20076.1prot_Ecto-sp13_S_contig86340.20076.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86340 166..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86340.20076.1

>prot_Ecto-sp13_S_contig86340.20076.1 ID=prot_Ecto-sp13_S_contig86340.20076.1|Name=mRNA_Ecto-sp13_S_contig86340.20076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MKNPILNDIHPKIKNNETVFKNCDLTNLTFQNVSLYGKNVFENTILPASG
IRLYDNTDDKLIERAEQVCGNIESNDKIESEVIFRRNLKQGQNPIILDDL
FLESFFKTEKSRNIFKNIVKGYELN*
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mRNA from alignment at Ecto-sp13_S_contig86340:166..570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86340.20076.1 ID=mRNA_Ecto-sp13_S_contig86340.20076.1|Name=mRNA_Ecto-sp13_S_contig86340.20076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86340:166..570- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTATGATTGCAAAATTTCTGGACTAATGAAAAATCCAATACTAAATGA
TATACATCCGAAAATAAAGAATAATGAAACGGTATTTAAGAATTGTGACT
TGACAAATTTGACTTTTCAGAATGTAAGTCTATATGGAAAAAATGTCTTT
GAAAACACTATACTTCCGGCTTCTGGAATTAGATTATATGACAACACAGA
TGATAAACTTATTGAAAGAGCAGAACAGGTTTGTGGGAACATTGAAAGTA
ATGATAAAATAGAATCGGAAGTGATTTTTAGAAGAAATTTAAAGCAAGGA
CAAAATCCTATCATTCTTGATGACTTATTCTTGGAGTCTTTTTTTAAGAC
AGAAAAATCGAGAAATATCTTTAAGAATATTGTTAAAGGATATGAATTAA
ATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86340:166..570-

>mRNA_Ecto-sp13_S_contig86340.20076.1 ID=mRNA_Ecto-sp13_S_contig86340.20076.1|Name=mRNA_Ecto-sp13_S_contig86340.20076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86340:166..570- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAATCCAATACTAAATGATATACATCCGAAAATAAAGAATAATGA
AACGGTATTTAAGAATTGTGACTTGACAAATTTGACTTTTCAGAATGTAA
GTCTATATGGAAAAAATGTCTTTGAAAACACTATACTTCCGGCTTCTGGA
ATTAGATTATATGACAACACAGATGATAAACTTATTGAAAGAGCAGAACA
GGTTTGTGGGAACATTGAAAGTAATGATAAAATAGAATCGGAAGTGATTT
TTAGAAGAAATTTAAAGCAAGGACAAAATCCTATCATTCTTGATGACTTA
TTCTTGGAGTCTTTTTTTAAGACAGAAAAATCGAGAAATATCTTTAAGAA
TATTGTTAAAGGATATGAATTAAATTAA
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