mRNA_Ecto-sp13_S_contig8630.20071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8630.20071.1
Unique NamemRNA_Ecto-sp13_S_contig8630.20071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8630.20071.1 vs. uniprot
Match: D7FP45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP45_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 1.760e-114
Identity = 189/220 (85.91%), Postives = 196/220 (89.09%), Query Frame = 1 
Query:    1 MATPASYDELLASATEVKHKTEFRSNADEALKLTVRQDVTRKAGLKKLGRSVLVFDFQPAGAFTATNSPNNVMEAPAHESSS-------QATAVDTAGRASGDGGAREAWPGDGEEGSGESTGVTSVSSVCVVFVHDRFNGAKQLYVNRALAYSVKKECTDGNLNSWVIPLPFGRAVLRLTSKLFASSGFEYVMTFDNDDRGXXXXXXXRGCGTVLYKST 639
            MAT ASYDELLASATEVKHKTEFRSNADEALKLTVRQDVTRKAG KKLGRSVLVFDFQPAGA T+TNSPNNVM+APAHESS+       +A AVDTAGRA GD  AR A PG+GEEGSGESTGVTS SSVCVVFVH+R+NGAKQLYVNRALAYSVKKECTDGNLNSWVIPLPFGRAVLRLTSKLFASSGFEYVMT DN DRG  XXXXX   GTVLYKST
Sbjct:    1 MATTASYDELLASATEVKHKTEFRSNADEALKLTVRQDVTRKAGFKKLGRSVLVFDFQPAGAITSTNSPNNVMDAPAHESSTVMAEGALRAAAVDTAGRAGGDWSAR-AGPGEGEEGSGESTGVTSASSVCVVFVHNRYNGAKQLYVNRALAYSVKKECTDGNLNSWVIPLPFGRAVLRLTSKLFASSGFEYVMTLDNHDRGGGXXXXXXR-GTVLYKST 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8630.20071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP45_ECTSI1.760e-11485.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8630contigEcto-sp13_S_contig8630:3629..5431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size645
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002440.1
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.8020668-CDS-Ecto-sp13_S_contig8630:3628..38801681464135.8020668-CDS-Ecto-sp13_S_contig8630:3628..3880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8630 3629..3880 -
1681464135.8142774-CDS-Ecto-sp13_S_contig8630:4552..48851681464135.8142774-CDS-Ecto-sp13_S_contig8630:4552..4885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8630 4553..4885 -
1681464135.8251715-CDS-Ecto-sp13_S_contig8630:5371..54311681464135.8251715-CDS-Ecto-sp13_S_contig8630:5371..5431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8630 5372..5431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8630.20071.1prot_Ecto-sp13_S_contig8630.20071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8630 3629..5431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8630.20071.1

>prot_Ecto-sp13_S_contig8630.20071.1 ID=prot_Ecto-sp13_S_contig8630.20071.1|Name=mRNA_Ecto-sp13_S_contig8630.20071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MATPASYDELLASATEVKHKTEFRSNADEALKLTVRQDVTRKAGLKKLGR
SVLVFDFQPAGAFTATNSPNNVMEAPAHESSSQATAVDTAGRASGDGGAR
EAWPGDGEEGSGESTGVTSVSSVCVVFVHDRFNGAKQLYVNRALAYSVKK
ECTDGNLNSWVIPLPFGRAVLRLTSKLFASSGFEYVMTFDNDDRGGGGGG
GGRGCGTVLYKSTH*
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mRNA from alignment at Ecto-sp13_S_contig8630:3629..5431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8630.20071.1 ID=mRNA_Ecto-sp13_S_contig8630.20071.1|Name=mRNA_Ecto-sp13_S_contig8630.20071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8630:3629..5431- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACGCCTGCCTCATATGATGAGCTGTTGGCATCAGCGACCGAAGT
GAAGCATAAGGTAAGTCGTGAGAGATCAAGGCAACAGCAAGTTCAACTTG
TTCAAATTTGAATCTCTGCTACAAAAAATAACCGACTTACGATTGCTTCG
GTACACCAGTATCGATGGCAGCAGAATAGCGTGCAAAATACACATGAAAA
ATGTGCAGGCAGTGGCGGCGCTTGGCATTGTGGGGTGTCCTCCCTTCAAG
TCTGTCAGAATCGCGTGAGTATAGGCGGTCCGGTAGATCTTCTGCTCTGT
AGGGTGCACATACACGCCGGTTTCATATGTCGGTGTGTTATCCCGAAATT
TCCCGAGGTCTCCCGCGAGTCCGGGGGGCCAAGAGATTCCTCAGAAATTA
CCAGTGCTGCGAAATCCGTGCGAACGCTTGATTAGCATCTCAGCGGGTCA
TGACACCATGCGACTTTTTGGTCGTCTGTAACCCCCTCCTCTGTTACCGC
CCTTCGCCGCTGTGCATGTATACGTTTTGCACCGCCTCAAAATAAGACGG
AGTTCAGATCGAACGCCGACGAAGCACTCAAGCTCACCGTGCGACAAGAC
GTCACCCGCAAGGCTGGGCTCAAGAAACTCGGCCGCTCAGTCCTCGTGTT
CGACTTCCAGCCCGCCGGCGCCTTCACCGCCACGAACAGTCCTAACAACG
TCATGGAAGCGCCGGCACACGAATCATCCTCTCAAGCAACAGCGGTAGAC
ACCGCTGGACGAGCGAGCGGAGACGGGGGTGCGAGAGAAGCATGGCCAGG
AGATGGAGAAGAAGGAAGCGGGGAAAGCACTGGTGTCACGAGCGTGTCTT
CCGTCTGCGTGGTTTTCGTTCACGACAGGGTAATAAAAATTATTCCTCGG
TTCGACTATTTTGTACCATGTGCGTGAGATATCCTAAAAGCGGCTGCGTG
AGAATATCTGCGAAAAAAGCTTCGACCTTGTTCCGGCGCCTCGCTTGTTG
TTGCTTCATGTTTTGCGCGTTCGCCACGAAAGATGCTGGTACGTGACACT
CTTCAAAACCATCGTATTGTTGTTCGCGCACGCAGAGATCCATAAATTGT
TCAGCACCGTCTCTCGGCGTCGTGCCGGCTTGCGTGTTTGAGATGATCGG
GGCCACTCGTCGGCGGGTACTATGTGTTTGTACAGCAGTATGATGTGTGT
GCTTATTGCAGGCTCGAGTCACGCTTGCTTCCACCACCACCATGTGTGGT
CGAAGACGCTCCAACGGTTGGTCGTGGGCGCCACTACTGCTGCCTCGTCG
TTGAACGGGACTTGACAGTAGCAAACCGCCTCCGAGCCCCCCCTCACTTA
AGGTACCATCATTTCGAATACCTTCACGCTTCCTGCCCTCTTCCCCGCCT
TTAACATATGATAACTATTCTTCTTGCTGTCGTCCTTCTTCTCGTCGTCG
CCCCTGACCAACCTCCCACTCCCACCCCTTTTCCCGCATCTCTCTCTCCC
TCTCTGAACGCACTCCGCGCCCCATGCGACGATTGATTCCCTCGTTTCCA
GTTCAACGGGGCTAAGCAGCTCTACGTCAACCGAGCGCTGGCGTACAGCG
TCAAGAAGGAGTGCACCGACGGGAACCTGAACTCTTGGGTTATTCCGCTG
CCGTTCGGGCGGGCCGTGCTCAGGCTCACGAGCAAGCTATTCGCCTCGAG
CGGCTTCGAATATGTCATGACCTTCGACAACGACGACCGCGGTGGAGGCG
GCGGCGGCGGCGGTCGTGGTTGTGGTACCGTTTTGTACAAGAGCACCCAC
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8630:3629..5431-

>mRNA_Ecto-sp13_S_contig8630.20071.1 ID=mRNA_Ecto-sp13_S_contig8630.20071.1|Name=mRNA_Ecto-sp13_S_contig8630.20071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8630:3629..5431- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACGCCTGCCTCATATGATGAGCTGTTGGCATCAGCGACCGAAGT
GAAGCATAAGACGGAGTTCAGATCGAACGCCGACGAAGCACTCAAGCTCA
CCGTGCGACAAGACGTCACCCGCAAGGCTGGGCTCAAGAAACTCGGCCGC
TCAGTCCTCGTGTTCGACTTCCAGCCCGCCGGCGCCTTCACCGCCACGAA
CAGTCCTAACAACGTCATGGAAGCGCCGGCACACGAATCATCCTCTCAAG
CAACAGCGGTAGACACCGCTGGACGAGCGAGCGGAGACGGGGGTGCGAGA
GAAGCATGGCCAGGAGATGGAGAAGAAGGAAGCGGGGAAAGCACTGGTGT
CACGAGCGTGTCTTCCGTCTGCGTGGTTTTCGTTCACGACAGGTTCAACG
GGGCTAAGCAGCTCTACGTCAACCGAGCGCTGGCGTACAGCGTCAAGAAG
GAGTGCACCGACGGGAACCTGAACTCTTGGGTTATTCCGCTGCCGTTCGG
GCGGGCCGTGCTCAGGCTCACGAGCAAGCTATTCGCCTCGAGCGGCTTCG
AATATGTCATGACCTTCGACAACGACGACCGCGGTGGAGGCGGCGGCGGC
GGCGGTCGTGGTTGTGGTACCGTTTTGTACAAGAGCACCCACTAG
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