mRNA_Ecto-sp13_S_contig86296.20069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86296.20069.1
Unique NamemRNA_Ecto-sp13_S_contig86296.20069.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A6H5K078_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K078_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 5.980e-36
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ
Sbjct:  134 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 200          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A7S3YEV8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEV8_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-19
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWS 159
            RQLWGVD+ T+ KKQL  PPNDGDTEENLSLEEKLRRERQRL A GVT++ W+
Sbjct:   65 RQLWGVDLETLEKKQLFSPPNDGDTEENLSLEEKLRRERQRLMAVGVTAYAWA 117          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A356KCX9_9BACT (S9 family peptidase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KCX9_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 6.320e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            ++LWG D+ +  ++++V PP  GDTEENLSLEEKLRRER RL A G+T + W+ +G    R++VP+ 
Sbjct:   45 QELWGYDLASGERRRVVSPPGAGDTEENLSLEEKLRRERLRLRALGITRYAWAKQGQ---RLIVPIS 108          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A2G6GKJ7_9CHLR (Peptidase S9 n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2G6GKJ7_9CHLR)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPL 198
            +QL+ +++      QLV PP DGDTEENLSLEEKLRRER R H TG+T + WS  G    RI++PL
Sbjct:   45 QQLYALNLENGDTHQLVKPPGDGDTEENLSLEEKLRRERMRQHKTGITQYSWSKDG----RILIPL 106          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A4D9CWA1_9STRA (Peptidase_S9 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWA1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.730e-13
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RQLWGVDV---NTMAKKQLVMPP-NDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQV 204
            RQLW VD+   +++  +Q++ PP N GDTEENLSL+EKLRRERQR +A G+T++ W     A  +I+VPLQV
Sbjct:   35 RQLWVVDIREGSSLQPRQVLAPPSNGGDTEENLSLDEKLRRERQRAYAVGITTYAWG----AGKKILVPLQV 102          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: I2CS87_NANGC (Dipeptidyl peptidase iv (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS87_NANGC)

HSP 1 Score: 69.3 bits (168), Expect = 2.600e-13
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 RQLWGVDV---NTMAKKQLVMPP-NDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            RQLW VD+   +++  +Q++ PP N GDTEENLSL+EKLRRERQR +A G+T++ W        +I+VPLQ
Sbjct:   35 RQLWVVDIREGSSLQPRQVLAPPSNGGDTEENLSLDEKLRRERQRAYAVGITTYAWG----VGEKILVPLQ 101          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A067CFU7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFU7_SAPPC)

HSP 1 Score: 69.3 bits (168), Expect = 3.720e-12
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            +QL+G+D+ ++A   +  PP  G+TE NLSLEEKLRRERQR   TG+TSF W     +  RI+ PLQ
Sbjct:   45 QQLYGLDMGSLAVSLVARPPGSGNTESNLSLEEKLRRERQRQMGTGITSFLWCPTPHST-RIVYPLQ 110          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A5D6Y199_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y199_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.950e-12
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            RQL+ +DV     + L  PPN GDTE NLSLEEKLRRERQR    G+TS+ W     +  RI+ P+Q
Sbjct:   46 RQLYALDVRARTTQLLASPPNQGDTERNLSLEEKLRRERQRQMGVGITSYAWCPAPHST-RILYPIQ 111          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: A0A1W0A7J1_9STRA (Dipeptidyl peptidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7J1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.770e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            +QL+G+D+ T     +  PP  G+TE NLSLEEKLRRERQR   TG+TSF W     +  RI+ PLQ
Sbjct:   45 QQLYGLDMTTYQVALVARPPGSGNTESNLSLEEKLRRERQRQMGTGITSFLWCPAPHST-RIIYPLQ 110          
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Match: D0NFS3_PHYIT (Dipeptidyl peptidase, putative n=7 Tax=Phytophthora TaxID=4783 RepID=D0NFS3_PHYIT)

HSP 1 Score: 67.4 bits (163), Expect = 1.780e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 RQLWGVDVNTMAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANIRIMVPLQ 201
            RQL+ +DV +     L  PPN G+TE NLSLEEKLRRERQR    G+TS+ W+   S + RI+ PLQ
Sbjct:   49 RQLYALDVASRRVSLLAAPPNQGNTEGNLSLEEKLRRERQRQMGVGITSYAWNP-SSLSQRILYPLQ 114          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86296.20069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K078_9PHAE5.980e-36100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3YEV8_HETAK1.160e-1977.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A356KCX9_9BACT6.320e-1450.75S9 family peptidase (Fragment) n=1 Tax=Planctomyce... [more]
A0A2G6GKJ7_9CHLR1.200e-1356.06Peptidase S9 n=2 Tax=Chloroflexi bacterium TaxID=2... [more]
A0A4D9CWA1_9STRA1.730e-1354.17Peptidase_S9 domain-containing protein n=1 Tax=Nan... [more]
I2CS87_NANGC2.600e-1352.11Dipeptidyl peptidase iv (Fragment) n=1 Tax=Nannoch... [more]
A0A067CFU7_SAPPC3.720e-1252.24Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A5D6Y199_9STRA6.950e-1252.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1W0A7J1_9STRA1.770e-1152.24Dipeptidyl peptidase n=1 Tax=Thraustotheca clavata... [more]
D0NFS3_PHYIT1.780e-1153.73Dipeptidyl peptidase, putative n=7 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86296contigEcto-sp13_S_contig86296:369..575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score109.8
Seed ortholog evalue4.5e-22
Seed eggNOG ortholog2880.D7FUX6
Model size207
KEGG koko:K01278
KEGG Pathwayko04974,map04974
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons1
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG1506@1,KOG2281@2759
EC3.4.14.5
Cds size177
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.661451-CDS-Ecto-sp13_S_contig86296:368..5451681464135.661451-CDS-Ecto-sp13_S_contig86296:368..545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86296 369..545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.6750078-UTR-Ecto-sp13_S_contig86296:545..5751681464135.6750078-UTR-Ecto-sp13_S_contig86296:545..575Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86296 546..575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86296.20069.1prot_Ecto-sp13_S_contig86296.20069.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86296 369..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86296.20069.1

>prot_Ecto-sp13_S_contig86296.20069.1 ID=prot_Ecto-sp13_S_contig86296.20069.1|Name=mRNA_Ecto-sp13_S_contig86296.20069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MAKKQLVMPPNDGDTEENLSLEEKLRRERQRLHATGVTSFFWSSRGSANI
RIMVPLQV*
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mRNA from alignment at Ecto-sp13_S_contig86296:369..575-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86296.20069.1 ID=mRNA_Ecto-sp13_S_contig86296.20069.1|Name=mRNA_Ecto-sp13_S_contig86296.20069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86296:369..575- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCAGTTGTGGGGCGTGGACGTGAACACCATGGCGAAGAAGCAGCTGGT GATGCCCCCTAACGATGGTGACACGGAGGAGAACCTCAGCCTAGAGGAGA AGCTTAGGAGGGAGAGGCAGAGGCTGCACGCCACGGGGGTGACGTCATTC TTCTGGTCGTCGAGGGGGAGCGCCAACATCCGCATCATGGTGCCGCTACA GGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86296:369..575-

>mRNA_Ecto-sp13_S_contig86296.20069.1 ID=mRNA_Ecto-sp13_S_contig86296.20069.1|Name=mRNA_Ecto-sp13_S_contig86296.20069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86296:369..575- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGAAGCAGCTGGTGATGCCCCCTAACGATGGTGACACGGAGGA
GAACCTCAGCCTAGAGGAGAAGCTTAGGAGGGAGAGGCAGAGGCTGCACG
CCACGGGGGTGACGTCATTCTTCTGGTCGTCGAGGGGGAGCGCCAACATC
CGCATCATGGTGCCGCTACAGGTGTGA
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