mRNA_Ecto-sp13_S_contig862.20052.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig862.20052.1
Unique NamemRNA_Ecto-sp13_S_contig862.20052.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A6H5K7T3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7T3_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 8.020e-46
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFKKVE 234
            TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVM+QAGCEMLDAILLTHWHADHVGGV++IRKALGGNIP+FKK +
Sbjct:   40 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMRQAGCEMLDAILLTHWHADHVGGVNDIRKALGGNIPVFKKYD 117
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: D7FQG0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.920e-45
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFKK 228
            TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNI +FKK
Sbjct:   76 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNISVFKK 151
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A4RTY3_OSTLU (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTY3_OSTLU)

HSP 1 Score: 105 bits (261), Expect = 9.930e-26
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFKKV 231
            TLQGTN YLVG G  R+LID GEG+ G+  ++++ M+ +GCE L  +LLTHWH DHVGG+  +RKALG N+P +K++
Sbjct:   20 TLQGTNTYLVGTGRERVLIDCGEGRRGYAKNVIEAMRASGCERLKCVLLTHWHPDHVGGLRGLRKALGENVPAYKRI 96
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: Q01D52_OSTTA (Beta-lactamase-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01D52_OSTTA)

HSP 1 Score: 101 bits (252), Expect = 5.750e-24
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFKKV 231
            TLQGTN YLVG G  R+L+D GEG+ G+   +L+ M++ GC+ L AI+ THWH DHVGG+ ++RKALG ++P +K+V
Sbjct:   56 TLQGTNTYLVGVGRTRVLVDCGEGRYGYAESVLETMRRVGCDRLSAIVCTHWHPDHVGGLRKLRKALGAHVPAYKRV 132
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A7S2KIQ9_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2KIQ9_BIGNA)

HSP 1 Score: 96.3 bits (238), Expect = 7.830e-23
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFKKVE 234
            TLQGTN YLVG G  RILIDTGEG+  ++ +L + M +  C+ +  ILLTH+H DHVGGVS++R+A G +IP++K  E
Sbjct:   30 TLQGTNTYLVGRGTSRILIDTGEGRPEYISNLKEAMTKGKCKKIQMILLTHFHHDHVGGVSQVREAFGKSIPVYKMPE 107
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A7S2SI20_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SI20_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.130e-21
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFK 225
            TL GTN YLVG G RRILID+GEG+A ++P L   M +AGCE L+AIL TH H DH+GG+  +  ALG  +P +K
Sbjct:  113 TLNGTNTYLVGTGKRRILIDSGEGRASYIPLLEKAMAEAGCEELEAILCTHRHYDHIGGLESVYAALGKRVPTYK 187
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A812ZUR1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812ZUR1_9DINO)

HSP 1 Score: 85.1 bits (209), Expect = 1.270e-19
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFK 225
            +L GTN YLVG G+ RIL+D GEGKAG +  L+DVM Q GC  +  +++THWH DH+ GV E+    G  + + K
Sbjct:   20 SLTGTNLYLVGTGSSRILVDAGEGKAGVLQDLIDVMAQQGCHHISQVVITHWHIDHLLGVPELMDYFGSEMQVRK 94
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A4P9ZWY1_9FUNG (Beta-lactamase-like protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZWY1_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 3.230e-18
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEI 189
            TLQGTN YL+GNG++RIL+DTGEGK G++P L   +   G + +  ++LTHWHADHVGG+  +
Sbjct:   29 TLQGTNTYLIGNGSQRILLDTGEGKPGYIPLLEAALSHLGVDRISHVILTHWHADHVGGLPSL 91
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A812QDE9_9DINO (Lactb2 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812QDE9_9DINO)

HSP 1 Score: 85.9 bits (211), Expect = 3.770e-18
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFK 225
            +L GTN YLVG G+ RILID GEGKAG +  L+DVM Q GC  +  +++THWH DH+ GV E+    G ++ I K
Sbjct:   59 SLTGTNLYLVGTGSSRILIDAGEGKAGVLQDLIDVMAQQGCHHVSQVVITHWHIDHLLGVPELMDHFGSDMQIRK 133
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BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Match: A0A7S1KY92_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1KY92_ALECA)

HSP 1 Score: 81.6 bits (200), Expect = 3.810e-18
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    4 LQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLTHWHADHVGGVSEIRKALGGNIPIFK 225
            LQGTNCYLVG G RR+L+DTGEG A F   L +V++ AGC+ L  I+LTH H DH+GGV  + +   G +PI+K
Sbjct:   29 LQGTNCYLVGTGRRRLLVDTGEGVAAFHETLAEVLRVAGCD-LAGIVLTHAHLDHMGGVPRLARERPG-LPIWK 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig862.20052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7T3_9PHAE8.020e-4692.31Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
D7FQG0_ECTSI1.920e-4597.37Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A4RTY3_OSTLU9.930e-2655.84Lactamase_B domain-containing protein (Fragment) n... [more]
Q01D52_OSTTA5.750e-2454.55Beta-lactamase-like n=2 Tax=Ostreococcus tauri Tax... [more]
A0A7S2KIQ9_BIGNA7.830e-2355.13Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
A0A7S2SI20_9STRA3.130e-2157.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812ZUR1_9DINO1.270e-1949.33Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A4P9ZWY1_9FUNG3.230e-1855.56Beta-lactamase-like protein n=1 Tax=Dimargaris cri... [more]
A0A812QDE9_9DINO3.770e-1852.00Lactb2 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A7S1KY92_ALECA3.810e-1855.41Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig862contigEcto-sp13_S_contig862:223..903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score159.1
Seed ortholog evalue9e-37
Seed eggNOG ortholog2880.D7FQG0
Preferred nameLACTB2
Model size246
KEGG koko:K15318
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0016070,GO:0016787,GO:0016788,GO:0018958,GO:0019438,GO:0019748,GO:0019752,GO:0031974,GO:0032787,GO:0034641,GO:0036182,GO:0036184,GO:0042180,GO:0042181,GO:0042537,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046189,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070013,GO:0071704,GO:0072330,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900600,GO:1900602,GO:1900813,GO:1900815,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663
Exons2
EggNOG free text desc.hydroxyacylglutathione hydrolase activity
EggNOG OGsCOG0491@1,KOG0813@2759
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-01_006270.1
Cds size246
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.4761171-CDS-Ecto-sp13_S_contig862:222..3691681464134.4761171-CDS-Ecto-sp13_S_contig862:222..369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig862 223..369 -
1681464134.4882612-CDS-Ecto-sp13_S_contig862:804..9031681464134.4882612-CDS-Ecto-sp13_S_contig862:804..903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig862 805..903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig862.20052.1prot_Ecto-sp13_S_contig862.20052.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig862 223..903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig862.20052.1

>prot_Ecto-sp13_S_contig862.20052.1 ID=prot_Ecto-sp13_S_contig862.20052.1|Name=mRNA_Ecto-sp13_S_contig862.20052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
TLQGTNCYLVGNGARRILIDTGEGKAGFVPHLLDVMKQAGCEMLDAILLT
HWHADHVGGVSEIRKALGGNIPIFKKVEIPR*
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mRNA from alignment at Ecto-sp13_S_contig862:223..903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig862.20052.1 ID=mRNA_Ecto-sp13_S_contig862.20052.1|Name=mRNA_Ecto-sp13_S_contig862.20052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig862:223..903- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTACAAGGAACGAACTGTTATCTGGTTGGCAACGGCGCGCGGCGAAT
CCTGATCGATACAGGGGAGGGAAAAGCTGGGTTTGTGCCCCATCTCCTGG
TGAGGCGCACAATATGTTCGCGCATACGACATTGACTCGCCTTGTTGTGG
CTGGACATTGTTGGGTAGCTGGTGCATACCGTCAGACGCTGTGGGCTGAA
GATTGATTTAAGACCTTTGATAAGTAGCGAGTGACAAGCAGGGCGAGCAA
GCCCTGCATACTAGAAGGGGCTCCGCCCTTCCAGTAACACATAACATCAT
GATAAAACCCCGATCTCCTAGATCCGTATCTAGTGCCGAGTTACCCAACA
GACATTCAATCTTTTCCCCCCTTATTCATGTTGTGAACTCGGGCTAGATA
CTCATCATGCGGTATACCGGTCTACGATGTGGTGCCGATCCGGGGCTGGT
GACGGTGACTGCATGTGCAGTTAATCGCGATCAACATGATACAACGGAAC
CTTGCCAATCTTTGCTGACCGACCCAAAAACCAGGATGTGATGAAACAAG
CAGGATGCGAGATGTTGGACGCTATCTTGTTGACACATTGGCACGCTGAT
CACGTGGGGGGTGTCAGCGAAATCCGCAAGGCGCTTGGTGGGAATATTCC
TATCTTCAAGAAGGTAGAAATTCCGCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig862:223..903-

>mRNA_Ecto-sp13_S_contig862.20052.1 ID=mRNA_Ecto-sp13_S_contig862.20052.1|Name=mRNA_Ecto-sp13_S_contig862.20052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig862:223..903- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTACAAGGAACGAACTGTTATCTGGTTGGCAACGGCGCGCGGCGAAT
CCTGATCGATACAGGGGAGGGAAAAGCTGGGTTTGTGCCCCATCTCCTGG
ATGTGATGAAACAAGCAGGATGCGAGATGTTGGACGCTATCTTGTTGACA
CATTGGCACGCTGATCACGTGGGGGGTGTCAGCGAAATCCGCAAGGCGCT
TGGTGGGAATATTCCTATCTTCAAGAAGGTAGAAATTCCGCGTTGA
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