mRNA_Ecto-sp13_S_contig86100.20043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86100.20043.1
Unique NamemRNA_Ecto-sp13_S_contig86100.20043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86100.20043.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.300e-26
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIE 144
            ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIE
Sbjct:  175 ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIE 222
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BLAST of mRNA_Ecto-sp13_S_contig86100.20043.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.180e-24
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIE 144
            ADVTVQLKPEDGVDDITYNVVN ILEFIDSNPPKWQKWKEKANAAGIE
Sbjct:  245 ADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIE 292
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BLAST of mRNA_Ecto-sp13_S_contig86100.20043.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-9
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGI 141
            ADV V + P+D VD +  + V+ + +FIDSNPPKWQ+WK+ A A+GI
Sbjct:  183 ADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGI 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86100.20043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTH1_ECTSI5.300e-26100.00Shikimate Kinase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JIK7_9PHAE1.180e-2497.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK89_9STRA1.060e-953.19Shikimate kinase n=1 Tax=Tribonema minus TaxID=303... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86100contigEcto-sp13_S_contig86100:9..152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.8
Seed ortholog evalue4.5e-20
Seed eggNOG ortholog2880.D8LTH1
Preferred nameSK2
Model size144
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
Exons1
EggNOG free text desc.shikimate metabolic process
EggNOG OGs2QTKR@2759,COG0703@1
EC2.7.1.71
Cds size144
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.9676561-CDS-Ecto-sp13_S_contig86100:8..1521681464133.9676561-CDS-Ecto-sp13_S_contig86100:8..152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86100 9..152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86100.20043.1prot_Ecto-sp13_S_contig86100.20043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86100 9..152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86100.20043.1

>prot_Ecto-sp13_S_contig86100.20043.1 ID=prot_Ecto-sp13_S_contig86100.20043.1|Name=mRNA_Ecto-sp13_S_contig86100.20043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIE
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mRNA from alignment at Ecto-sp13_S_contig86100:9..152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86100.20043.1 ID=mRNA_Ecto-sp13_S_contig86100.20043.1|Name=mRNA_Ecto-sp13_S_contig86100.20043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86100:9..152- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGATGTGACCGTGCAGTTGAAACCAGAAGACGGCGTCGACGATATCAC
TTACAACGTCGTCAACACCATCCTCGAGTTCATTGACAGCAACCCTCCCA
AGTGGCAGAAGTGGAAGGAAAAGGCGAACGCGGCAGGAATCGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86100:9..152-

>mRNA_Ecto-sp13_S_contig86100.20043.1 ID=mRNA_Ecto-sp13_S_contig86100.20043.1|Name=mRNA_Ecto-sp13_S_contig86100.20043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86100:9..152- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGATGTGACCGTGCAGTTGAAACCAGAAGACGGCGTCGACGATATCAC
TTACAACGTCGTCAACACCATCCTCGAGTTCATTGACAGCAACCCTCCCA
AGTGGCAGAAGTGGAAGGAAAAGGCGAACGCGGCAGGAATCGAA
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