mRNA_Ecto-sp13_S_contig861.20042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: A0A6H5KTN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN1_9PHAE) HSP 1 Score: 557 bits (1436), Expect = 4.640e-192 Identity = 404/440 (91.82%), Postives = 410/440 (93.18%), Query Frame = 1
Query: 232 MPATPPQRGLPRLHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNVMGWGALESVYLARTPGDRPFAAAAVDCDDEWEQQTMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGVAALKKQQXXXXXXXXXXXXXHQE--TRAPAWTENSRGAVAAA--AKAEVRGLACRAEWKRHGSGGQRSRTVTTTMLR 1539
M ATPPQR LPRLHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAA+ SSVPSAMLLLRRGARPDP+P SP +PFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAI RMLLEAGADVEAVNPNGRTPLHLAAAEGNCS ARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAP GSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNV+GWGALESVYLARTPGDRPFAAA VDCDDEWEQQ+M+EEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMG AAL XXXXXXXXXXXXX TRAPAWTENS AKA VRGLACRAEWKRHGSGGQRSRTVT TMLR
Sbjct: 92 MQATPPQRELPRLHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAALCSSVPSAMLLLRRGARPDPLPGSPGQPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAIIRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSTARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPVGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNVLGWGALESVYLARTPGDRPFAAAVVDCDDEWEQQSMNEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGFAALXXXXXXXXXXXXXXXXXXXXXXTRAPAWTENSXXXXXXXXXAKAGVRGLACRAEWKRHGSGGQRSRTVTATMLR 531
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: D8LQX4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX4_ECTSI) HSP 1 Score: 508 bits (1308), Expect = 3.960e-175 Identity = 384/441 (87.07%), Postives = 390/441 (88.44%), Query Frame = 1
Query: 232 MPATPPQRGLPRLHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNVMGWGALESVYLARTPGDRPFAAAAVDCDDEWEQQTMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGVAALKKQQXXXXXXXXXXXXXHQE-----TRAPAWTENSRGAVAAAAKAEVRGLACRAEWKRHGSGGQRSRTVTTTMLR 1539
M ATP Q+GLPRLH AARNG LRELNALLDAGEDPEQPD AGRTPMVHAAVGSSVPSAMLLLRRGARPDP+P SPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNF AGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKRNVMGW ALESVYLARTPGDRPF AAAVDCD+EWEQ+ MSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGV+AL K+Q XXXXXXXXXXXX TRAPAWTENSRGA AAAAKA VRGLACRAEWKRHGSGGQRSRTVT TMLR
Sbjct: 1 MQATPLQQGLPRLHTAARNGCLRELNALLDAGEDPEQPDHAGRTPMVHAAVGSSVPSAMLLLRRGARPDPLPGSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFG---------------------------AGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRNVMGWRALESVYLARTPGDRPFTAAAVDCDNEWEQEAMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGVSALNKRQQXXXXXXXXXXXXXXXXXXXGTRAPAWTENSRGAAAAAAKAGVRGLACRAEWKRHGSGGQRSRTVTATMLR 414
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: UPI002007F9E6 (uncharacterized protein n=1 Tax=Annulohypoxylon maeteangense TaxID=1927788 RepID=UPI002007F9E6) HSP 1 Score: 79.0 bits (193), Expect = 1.190e-11 Identity = 54/154 (35.06%), Postives = 76/154 (49.35%), Query Frame = 1
Query: 268 LHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRM------LLEAGADVEAVNPNGRTPLHL 711
LH A + LLD+G D E D TP++ A +G + + +LL RGA PD + + D AL +A G E + RVL+EAG+ N +K P + + LHL + T+ LLE GADV+A+N N TPLH+
Sbjct: 990 LHHATMENMAEAVEQLLDSGADIECQDGQDATPLLLACLGEQMRTVRVLLDRGANPDHIAT--DSANYRALHIAARQGNEPLVRVLLEAGSSENARLKKPMW--------DTPLHLAIYHSQNDTQYAQTVNTLLEFGADVDALNGNNMTPLHI 1133
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: UPI00187D64A2 (ankyrin repeat domain-containing protein n=1 Tax=Ramlibacter aquaticus TaxID=2780094 RepID=UPI00187D64A2) HSP 1 Score: 68.6 bits (166), Expect = 1.730e-9 Identity = 59/164 (35.98%), Postives = 77/164 (46.95%), Query Frame = 1
Query: 274 RAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGA 765
R+ R ++ + ALL G DP D G T + A+ P LL P SPD S LM+A G E+IAR+L+E GADVN P ++ G HA AI LL+ A ++A PNG TPL +AA +LLL+AGA
Sbjct: 31 RSVRQDDVQAVQALLQRGFDPNTIDEKGLTGLF-IALRDEYPKVARLLAGWPATQPEFRSPDGE--STLMMACLRGNEDIARLLVERGADVNKPGWTPLHYAAT----------GGHA--AIAAFLLDQNAYIDADAPNGNTPLMMAALYXXAETVKLLLDAGA 179
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: UPI0007806A79 (ankyrin repeat domain-containing protein n=2 Tax=Caldimonas TaxID=196013 RepID=UPI0007806A79) HSP 1 Score: 65.9 bits (159), Expect = 1.340e-8 Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 1
Query: 274 RAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAP-PAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARP 771
RA R+ R L AL G DP D GR+P+ A + +A L+R+ PD P+ + LM+A G E+AR L+ GA ++ P LH P P + ++L+ GA ++A PNG TPL +AA G+ ++A +LL AGA P
Sbjct: 29 RALRSDDARTLEALFARGFDPNTVDPQGRSPLSLAFHYEAYEAARALVRQ---PDFRFDEPNAAGETPLMLAALRGQWELARALLVRGARLDRPGWTP-------------LHYAAAGPEPRVVQLLIGHGAALDARAPNGNTPLMMAARYGSEASAWMLLHAGADP 179
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: UPI00199FA516 (Ankyrin repeat domain-containing protein n=1 Tax=Frankiaceae bacterium TaxID=2654182 RepID=UPI00199FA516) HSP 1 Score: 68.6 bits (166), Expect = 1.460e-8 Identity = 67/194 (34.54%), Postives = 86/194 (44.33%), Query Frame = 1
Query: 235 PATPPQRGLP-----RLHRAARNGYLRELNALLDAGED----PEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSS---GYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAP-PAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAP 777
P +PP LP RL A R G + LDAG D P D RT + AA+ + L+ RG V + ++AL+ A G E L+ GAD SS GEG LH + PA+ +LL+AGA V+A+N G PL +A A GN AR L+E GARP P
Sbjct: 222 PPSPPPEPLPGTPDERLTAALRAGRIDAALEALDAGADAHALPAADDRDQRTLPMLAALQGDLRLLRQLIGRG-----VDLNQRHGGLTALLAATRDSWHGRPEAVMTLLANGADAR----------SSDGEGNTPLHHAARSTDPAVAALLLDAGAQVDALNAEGFGPLAIACASGNWRRARCLIEHGARPEP 400
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: UPI0015518DB9 (ankyrin repeat domain-containing protein n=1 Tax=Caenimonas soli TaxID=2735555 RepID=UPI0015518DB9) HSP 1 Score: 65.5 bits (158), Expect = 1.820e-8 Identity = 59/157 (37.58%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 304 LNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPD-PVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARP 771
+ LL G DP P++ G P ++ A+ P A L + + V + D S LM+A G+ ++AR LIE GADVN P S+ G HL AI +LLE A ++A +PNG TPL +AA G +A +LLLEAGA P
Sbjct: 40 ITNLLKRGFDPNTPNAEG-LPGLYLALREPSPKAAEALITWPKTNLEVRTLQDE---SPLMMAALKGHLDLARKLIERGADVNKTGWTPLHYASTNG------HL------AIMELLLENHAYIDAESPNGSTPLMMAAHYGTPAAVKLLLEAGADP 180
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: A0A7R9Y986_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y986_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.100e-8 Identity = 53/169 (31.36%), Postives = 80/169 (47.34%), Query Frame = 1
Query: 265 RLHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGT-HAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGAR 768
+L AA G LR+L L+ G D++G + + +AA + LLL GA P + D P +++A SG + +VL+ G + + + +G CLH+ H + +LL GADV A + G+TPLHL AA + AR+L GAR
Sbjct: 120 KLRTAASLGSLRDLQMLISKGVSLNAIDASGYSALHYAAGQGHADAVDLLLHSGATCHPTDVA-DPP----ILLACQSGSTSVVKVLLAWGT---------SLAQTKNSQGRGCLHVAALHGKADVVALLLAEGADVNARDDAGKTPLHLVAATPHVEVARMLASKGAR 274
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: A0A494TK62_SPHPE (Ankyrin repeat domain-containing protein n=1 Tax=Sphingomonas paeninsulae TaxID=2319844 RepID=A0A494TK62_SPHPE) HSP 1 Score: 63.5 bits (153), Expect = 3.370e-8 Identity = 53/155 (34.19%), Postives = 78/155 (50.32%), Query Frame = 1
Query: 268 LHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVS-ALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGN 729
L AAR G ++AL+ AG D E +S G TP++ A+ + + +L+ +GA D +PD + ALM V GY+EIA +LI AGADVN + + + A AI +LL AGA+ V+ G + +AAA+ N
Sbjct: 19 LFEAARRGRDDMIDALVQAGGDIEGFNSQGHTPLILASYNGNASTTAILIDKGASVD----TPDLGRGNTALMGCVFKGYDEIAALLINAGADVNKR---------NAADQTAIMLAAMFARDAIVDLLLGAGANPALVDAVGNSAASVAAAQNN 160
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Match: A0A4R6U5R8_9BURK (Uncharacterized protein n=1 Tax=Tepidicella xavieri TaxID=360241 RepID=A0A4R6U5R8_9BURK) HSP 1 Score: 64.3 bits (155), Expect = 5.530e-8 Identity = 58/180 (32.22%), Postives = 80/180 (44.44%), Query Frame = 1
Query: 232 MPATPPQRGLPRLHRAARNGYLRELNALLDAGEDPEQPDSAGRTPMVHAAVGSSVPSAMLLLRRGARPDPVPSSPDRPFVSALMVAVSSGYEEIARVLIEAGADVNLEMKGPNFSGSSVGEGERCLHLGTHAPPAITRMLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARP 771
+P+ Q R A +R L L +AG D P P+ A S+ +A L+ R S D +ALM+A G ++ LI A VN P ++ H G +AP AITR+LLE A ++A +PN TPL +AA G+ R+LLE GA P
Sbjct: 27 LPSAAQQGSYERFFTAILRDDVRTLERLAEAGFDLNAPSPDLEPPLFLAVKSESLRAARFLIERPEVNVDARGSADE---NALMIAALKGQLDLVEALIARRAQVNKPGWTPLHYAAT--------HKGPNAP-AITRLLLEHHAFIDAESPNKTTPLMMAAHYGHPMVVRILLEEGADP 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig861.20042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig861.20042.1 >prot_Ecto-sp13_S_contig861.20042.1 ID=prot_Ecto-sp13_S_contig861.20042.1|Name=mRNA_Ecto-sp13_S_contig861.20042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=513bp LLSWSRGVDEYLRHNHQSALVSAKRRLHQFRSCPAVSCSFFSRCANQRCAback to top mRNA from alignment at Ecto-sp13_S_contig861:17673..20708- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig861.20042.1 ID=mRNA_Ecto-sp13_S_contig861.20042.1|Name=mRNA_Ecto-sp13_S_contig861.20042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig861:17673..20708- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig861:17673..20708- >mRNA_Ecto-sp13_S_contig861.20042.1 ID=mRNA_Ecto-sp13_S_contig861.20042.1|Name=mRNA_Ecto-sp13_S_contig861.20042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig861:17673..20708- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |