mRNA_Ecto-sp13_S_contig86094.20038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86094.20038.1
Unique NamemRNA_Ecto-sp13_S_contig86094.20038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: D8LGT0_ECTSI (Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT0_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 7.860e-20
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            +IHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR
Sbjct:  101 EIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 142
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A6H5KGJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.150e-18
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            +IHVTDDDPFSLTRGGALEDLSRV KYRMSEEDYD+REGTLR
Sbjct:  101 EIHVTDDDPFSLTRGGALEDLSRVPKYRMSEEDYDRREGTLR 142
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A7S3UUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL1_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 2.080e-13
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            +IHV DDDP+SL+RGG LED+S+V+KYRM+EEDYD+R GT+R
Sbjct:  104 EIHVVDDDPYSLSRGGGLEDVSQVEKYRMTEEDYDRRSGTIR 145
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: M4B8F5_HYAAE (CAP-Gly domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8F5_HYAAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.070e-12
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            ++HV D+DPFSL+RGG LED+S VQKY MSEEDYDKRE ++R
Sbjct:   28 RLHVVDNDPFSLSRGGGLEDVSLVQKYEMSEEDYDKREKSVR 69
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A835ZAK6_9STRA (Putative tubulin-specific chaperone B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.370e-12
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            ++HV D DPFSL+RGG LED+S VQKYRM++E+YD+R+GTLR
Sbjct:  101 EVHVMDTDPFSLSRGGGLEDVSLVQKYRMTDEEYDQRKGTLR 142
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A5A8E4C2_CAFRO (CAP-Gly domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4C2_CAFRO)

HSP 1 Score: 66.6 bits (161), Expect = 1.150e-11
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            ++HV D DP SL+RGG L+D+S+V+KY MSEEDYDKREGTLR
Sbjct:  112 RVHVVDHDPMSLSRGGGLDDVSQVKKYVMSEEDYDKREGTLR 153
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A812WKK6_9DINO (TFCB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WKK6_9DINO)

HSP 1 Score: 65.9 bits (159), Expect = 2.080e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   16 IHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            +HVTD DP SL++ G LED+S+V+KYRMSEEDY+KREGTLR
Sbjct:  112 LHVTDLDPHSLSKNGGLEDVSQVEKYRMSEEDYEKREGTLR 152
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A7S2W9K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9K5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 8.070e-11
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   16 IHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            IH+ D+DP+SL+RGG LED S ++KYRMSE+ YDKR+GT+R
Sbjct:  114 IHIIDEDPYSLSRGGGLEDTSLIEKYRMSEDTYDKRKGTVR 154
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A8K1FRW2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRW2_PYTOL)

HSP 1 Score: 63.5 bits (153), Expect = 9.540e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            ++HV D DPFSL+RGG LED+S ++KY +SEEDYDKRE T+R
Sbjct:  102 RLHVVDTDPFSLSRGGGLEDVSLIKKYEISEEDYDKREKTVR 143
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BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Match: A0A484E9I7_BRELC (CAP-Gly domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E9I7_BRELC)

HSP 1 Score: 63.5 bits (153), Expect = 9.820e-11
Identity = 27/42 (64.29%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   13 QIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR 138
            ++H+ D+DPFSL+R G LED+SRV+KY +SE+DYDKRE T+R
Sbjct:  102 RLHIVDNDPFSLSRSGGLEDVSRVKKYEISEDDYDKREKTVR 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86094.20038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT0_ECTSI7.860e-2097.62Alpha-tubulin folding cofactor n=1 Tax=Ectocarpus ... [more]
A0A6H5KGJ0_9PHAE9.150e-1892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UUL1_HETAK2.080e-1371.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M4B8F5_HYAAE4.070e-1271.43CAP-Gly domain-containing protein n=1 Tax=Hyaloper... [more]
A0A835ZAK6_9STRA7.370e-1269.05Putative tubulin-specific chaperone B n=1 Tax=Trib... [more]
A0A5A8E4C2_CAFRO1.150e-1171.43CAP-Gly domain-containing protein n=2 Tax=Cafeteri... [more]
A0A812WKK6_9DINO2.080e-1173.17TFCB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S2W9K5_9STRA8.070e-1165.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1FRW2_PYTOL9.540e-1166.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E9I7_BRELC9.820e-1164.29CAP-Gly domain-containing protein n=1 Tax=Bremia l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86094contigEcto-sp13_S_contig86094:182..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score86.7
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog2880.D8LGT0
Preferred nameTBCB
Model size138
KEGG koko:K10423,ko:K17262
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009798,GO:0009987,GO:0009994,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
Exons1
EggNOG free text desc.cell differentiation
EggNOG OGsKOG3206@1,KOG3206@2759
Cds size138
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.585887-CDS-Ecto-sp13_S_contig86094:181..3191681464133.585887-CDS-Ecto-sp13_S_contig86094:181..319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86094 182..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86094.20038.1prot_Ecto-sp13_S_contig86094.20038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86094 182..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86094.20038.1

>prot_Ecto-sp13_S_contig86094.20038.1 ID=prot_Ecto-sp13_S_contig86094.20038.1|Name=mRNA_Ecto-sp13_S_contig86094.20038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MPFPQIHVTDDDPFSLTRGGALEDLSRVQKYRMSEEDYDKREGTLR
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mRNA from alignment at Ecto-sp13_S_contig86094:182..319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86094.20038.1 ID=mRNA_Ecto-sp13_S_contig86094.20038.1|Name=mRNA_Ecto-sp13_S_contig86094.20038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86094:182..319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTTTCCCCAGATACACGTGACCGACGATGATCCGTTCTCCCTCAC
TCGCGGAGGGGCATTGGAAGACTTATCGCGGGTACAAAAGTACCGAATGA
GCGAGGAGGACTACGACAAAAGAGAGGGGACGCTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86094:182..319-

>mRNA_Ecto-sp13_S_contig86094.20038.1 ID=mRNA_Ecto-sp13_S_contig86094.20038.1|Name=mRNA_Ecto-sp13_S_contig86094.20038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86094:182..319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTTTCCCCAGATACACGTGACCGACGATGATCCGTTCTCCCTCAC
TCGCGGAGGGGCATTGGAAGACTTATCGCGGGTACAAAAGTACCGAATGA
GCGAGGAGGACTACGACAAAAGAGAGGGGACGCTCAGG
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