mRNA_Ecto-sp13_S_contig85548.19958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85548.19958.1
Unique NamemRNA_Ecto-sp13_S_contig85548.19958.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85548.19958.1 vs. uniprot
Match: A0A1S1W673_9PEZI (Ankyrin unc44 n=3 Tax=Colletotrichum spaethianum species complex TaxID=2707349 RepID=A0A1S1W673_9PEZI)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   19 EVIKTLANAGANPDSRTPAGESPLFMAAKNGHVGTISELLRANA 150
            +V+ T+ NAGA+PD+RT  G +PLF A K GH+ T+  L+ A A
Sbjct:  609 DVLATMVNAGADPDTRTWPGFTPLFSAVKAGHLATVRLLITAGA 652
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85548.19958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1S1W673_9PEZI1.530e-550.00Ankyrin unc44 n=3 Tax=Colletotrichum spaethianum s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85548contigEcto-sp13_S_contig85548:426..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464125.7818317-CDS-Ecto-sp13_S_contig85548:425..5811681464125.7818317-CDS-Ecto-sp13_S_contig85548:425..581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85548 426..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85548.19958.1prot_Ecto-sp13_S_contig85548.19958.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85548 426..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85548.19958.1

>prot_Ecto-sp13_S_contig85548.19958.1 ID=prot_Ecto-sp13_S_contig85548.19958.1|Name=mRNA_Ecto-sp13_S_contig85548.19958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
AVNDHSEVIKTLANAGANPDSRTPAGESPLFMAAKNGHVGTISELLRANA
NP
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mRNA from alignment at Ecto-sp13_S_contig85548:426..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85548.19958.1 ID=mRNA_Ecto-sp13_S_contig85548.19958.1|Name=mRNA_Ecto-sp13_S_contig85548.19958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85548:426..581- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTCAACGACCATTCCGAGGTAATCAAAACTTTAGCTAATGCAGGCGC
AAACCCAGACAGCCGTACGCCTGCCGGAGAGTCACCACTGTTCATGGCAG
CGAAAAACGGGCATGTAGGCACCATCAGCGAACTCCTTCGTGCGAATGCG
AACCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85548:426..581-

>mRNA_Ecto-sp13_S_contig85548.19958.1 ID=mRNA_Ecto-sp13_S_contig85548.19958.1|Name=mRNA_Ecto-sp13_S_contig85548.19958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85548:426..581- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTCAACGACCATTCCGAGGTAATCAAAACTTTAGCTAATGCAGGCGC
AAACCCAGACAGCCGTACGCCTGCCGGAGAGTCACCACTGTTCATGGCAG
CGAAAAACGGGCATGTAGGCACCATCAGCGAACTCCTTCGTGCGAATGCG
AACCCT
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