mRNA_Ecto-sp13_S_contig85521.19957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85521.19957.1
Unique NamemRNA_Ecto-sp13_S_contig85521.19957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: D8LTG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG2_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.070e-23
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   31 PGQSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            PGQS FILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERET+
Sbjct:   47 PGQSYFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETD 93
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A224XW39_9HEMI (Putative ribosome bioproteinis methyltransferase wbscr22 (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XW39_9HEMI)

HSP 1 Score: 81.6 bits (200), Expect = 1.970e-17
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 KTANPFFCPQPGQSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            K A    C    +SCF+LD+GCGSGLSG  LEEAGH+W+GVDIS+ MLDVA ERE E
Sbjct:    9 KRAIELLCLPEDKSCFLLDLGCGSGLSGSVLEEAGHLWIGVDISKAMLDVALEREVE 65
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A6U6G2G9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6G2G9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.290e-17
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   43 CFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANER 162
            CF+LDVGCGSGLSG+ LEE GHVW+G D+SRDM+DVANER
Sbjct:   51 CFVLDVGCGSGLSGQVLEEKGHVWVGCDVSRDMIDVANER 90
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A507C4N6_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C4N6_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 7.960e-17
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   37 QSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            QSC++LD+GCGSGLSGE LEE GH+W+G+DIS  MLDVA ER+TE
Sbjct:   15 QSCYLLDIGCGSGLSGECLEEDGHIWVGMDISDSMLDVAKERDTE 59
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A433PZI7_9FUNG (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PZI7_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 8.590e-17
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   31 PGQSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            PGQ C++LD+GCGSGLSGE LEE GHVW+G+DI+  MLDVA ERE E
Sbjct:   47 PGQPCYLLDIGCGSGLSGEILEEEGHVWVGMDIAPAMLDVAREREVE 93
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A7S4J5K2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5K2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.070e-16
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   43 CFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANER 162
            CF+LDVGCGSGLSG+ LEE GHVW+G D+SRDM+DVANER
Sbjct:   51 CFVLDVGCGSGLSGQVLEEKGHVWVGCDVSRDMIDVANER 90
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A7S0GAE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAE2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.070e-16
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   31 PGQSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANER 162
            P + C +LDVGCGSGLSG  LEE GHVW+G D+SRDMLDVANER
Sbjct:   18 PNRPCHVLDVGCGSGLSGRVLEEQGHVWVGCDVSRDMLDVANER 61
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A7R8Z1W8_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8Z1W8_HERIL)

HSP 1 Score: 79.3 bits (194), Expect = 2.140e-16
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   37 QSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            + CFILD+GCGSGLSGE+LEEAGH W+G+DIS+ MLD+A ERE E
Sbjct:   50 EPCFILDIGCGSGLSGESLEEAGHSWIGIDISKAMLDIAVEREVE 94
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A820LW96_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820LW96_9BILA)

HSP 1 Score: 75.5 bits (184), Expect = 3.050e-16
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   37 QSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            +SC +LDVGCGSGLSGE L + GH W+G+DISR MLDVA ERE E
Sbjct:   48 ESCLVLDVGCGSGLSGEVLTDLGHQWVGLDISRSMLDVAQEREVE 92
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BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Match: A0A7S3TKX9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKX9_9SPIT)

HSP 1 Score: 77.8 bits (190), Expect = 3.270e-16
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 KTANPFFCPQPGQSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDVANERETE 171
            + A    C    +SC +LDVGCG+GLSGE LEE GH W+GVDISRDML+VA  RE E
Sbjct:   77 ERAVEMLCLPEDESCMLLDVGCGTGLSGEVLEENGHSWVGVDISRDMLNVAQHREVE 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85521.19957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTG2_ECTSI6.070e-2395.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A224XW39_9HEMI1.970e-1764.91Putative ribosome bioproteinis methyltransferase w... [more]
A0A6U6G2G9_9STRA2.290e-1780.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A507C4N6_9FUNG7.960e-1773.33Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A433PZI7_9FUNG8.590e-1772.34S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4J5K2_9STRA1.070e-1680.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0GAE2_9STRA2.070e-1675.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7R8Z1W8_HERIL2.140e-1673.33Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A820LW96_9BILA3.050e-1671.11Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A7S3TKX9_9SPIT3.270e-1661.40Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85521contigEcto-sp13_S_contig85521:199..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score95.9
Seed ortholog evalue6.6e-18
Seed eggNOG ortholog2880.D8LTG2
Model size174
KEGG koko:K19306
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.rRNA (guanine-N7)-methylation
EggNOG OGsCOG0500@1,KOG1541@2759
EC2.1.1.309
Cds size174
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464125.750778-CDS-Ecto-sp13_S_contig85521:198..3721681464125.750778-CDS-Ecto-sp13_S_contig85521:198..372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85521 199..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85521.19957.1prot_Ecto-sp13_S_contig85521.19957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85521 199..372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85521.19957.1

>prot_Ecto-sp13_S_contig85521.19957.1 ID=prot_Ecto-sp13_S_contig85521.19957.1|Name=mRNA_Ecto-sp13_S_contig85521.19957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
KTANPFFCPQPGQSCFILDVGCGSGLSGEALEEAGHVWLGVDISRDMLDV
ANERETE*
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mRNA from alignment at Ecto-sp13_S_contig85521:199..372-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85521.19957.1 ID=mRNA_Ecto-sp13_S_contig85521.19957.1|Name=mRNA_Ecto-sp13_S_contig85521.19957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85521:199..372- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACTGCCAATCCGTTCTTTTGCCCCCAGCCAGGGCAATCGTGCTTCAT
TCTGGACGTGGGGTGCGGCAGCGGTCTTAGCGGAGAAGCGTTGGAAGAAG
CCGGCCATGTCTGGCTTGGCGTAGACATCAGCCGCGATATGCTCGACGTT
GCGAACGAACGGGAGACAGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85521:199..372-

>mRNA_Ecto-sp13_S_contig85521.19957.1 ID=mRNA_Ecto-sp13_S_contig85521.19957.1|Name=mRNA_Ecto-sp13_S_contig85521.19957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85521:199..372- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACTGCCAATCCGTTCTTTTGCCCCCAGCCAGGGCAATCGTGCTTCAT
TCTGGACGTGGGGTGCGGCAGCGGTCTTAGCGGAGAAGCGTTGGAAGAAG
CCGGCCATGTCTGGCTTGGCGTAGACATCAGCCGCGATATGCTCGACGTT
GCGAACGAACGGGAGACAGAGTGA
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