prot_Ecto-sp13_S_contig8551.19956.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig8551.19956.1
Unique Name	prot_Ecto-sp13_S_contig8551.19956.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	958

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig8551.19956.1 vs. uniprot
Match: D8LL53_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL53_ECTSI)

HSP 1 Score: 1464 bits (3789), Expect = 0.000e+0
Identity = 810/941 (86.08%), Postives = 834/941 (88.63%), Query Frame = 0

Query:   14 MTSMSIADPDVTSLGDVQRELDAIKAERRRRQRALYDGTLAGASRATTKMPATSSKVRFPAAARAVIWAKALHRKEEGDEGMLPYEPEACAPFQLLTMAYVPRSDGRLGPSPGHFMGSPVEALDLSPWDISFAGQIDALWRTNRCLRTLKLSGRSFGPDQEEILQALSRVGEQLTSLEITNCSGVTPDALAILLRGXXXXXXXXXXXXXXDMGDDHVAEVAHGCPALSSLDLSSCMGLTDQGKSIHDKGGKDLGLSAATSKDELPCLRRLLVSDCPGVGDLGLRAVLDGCVALQQLSAGGCDRVTGKAFLGEMFAGGVATAPVRGLKLLELPGCQQLHPSALEWIAAGCSNLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGGSTALSFVADRSGQFLQHLDISDIPATAASVVGKFLRNCGKLEFVDLSGLVKVDESSFRGLGGGGGKSVDDDGDTSAADPRGRTDQTKHNRSADIGVNPARELNGKGSMPSEAPALPHLRAARMLRLPGLDNASVVRFANACPSLEELLLSDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPGLESLAVAMGDGNRSRFMTDADHPGNSGHAGGGDRSRGSGGQHNTPHAPSRRAPYGGLLDCSVAPSTVLSSS-AAGTRTMQSCNVAFTGGFLLEAAWRHCPRLTTLGLEGHEQLNFSSEHSPAEAFPCLSELRLVGCTAVNDTGLVVLLKACPRVRSLSLVGSGVTQDALVKHSASSVMVSQSFAEVLPPVPFSSTSAGGDSRLTATSSRRARXXXXXXXXXXXXXXXXXXXXXKQDYWQLHTMESSTSMKQASDLTGGSCTSSSQSKHRVGQENGGSALATGLRPAPHYKLHLAAAAVVSRFDEEQRALETLGRALRHFRDRRARVLNSSARKICRRMLAFRFKSNTGQPDKVR 953
            MTSMSIADPDVTSL DVQRELDAIKAERRRRQRALYDGTLAGASR TTKMPATSSKVRFPAAAR VIWA ALHRKE+G+EGMLPYEPEACAPFQLLTMAYVP SDGRLGPSPGHFMGSPVEALDLSPWDISFAGQIDALWR NRCLRTLKLSGR+ GP+QEE+LQALSRVGEQLTSLEITNCSGVTP AL ILL G              DMGDDHVAEV  GCPAL S       GLTDQ            GLSAATSKD L CL+RLLVSDCPGVGDLGLRAVLDGC ALQ+LSAGGCDRVTG+ FLGEMFAGGVATAPVRGLKLLELP CQQLHPSALEWIAAGCS+LRS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGGSTALSFVADRSG++LQHLDISDIPATAASVVGKFLRNCGKLEFVDLSGLVKVDESSF GLGGGGGKSVD DGDTS ADPRGRTDQ KHN SA++G+NPARELNGKGSM SEAPALPHLRAARMLRLPGLDNASVVRFANACPSLEELLLSDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPGLE LAVAMGDGNRSRFMTDADHPGNSGHA GG RS GS GQHNTPHAPSRRAPYGGLLDCSV+ STV SSS AAGTRTM+  N+AFTGG LLEAA RHCPRLTTLGLEGHEQLNFSSEHSPAEAFPCL+ELRLVGCTAVNDTGLV LLKACPRVRSLSL+GSGVTQDALVKHSASSVMVSQS AEVLPPVPFSS  A GDSR TATSSRR R                     KQ Y QL TMESSTSM+QASDL GGSCTSSSQSKHRVGQENGGSALA GLRPAPH+KLHLAAAAVVSRFDEEQRALETLGRALRHFRDRRAR L SSARKICRRMLA+RFKSNTG+PDK+R
Sbjct:    1 MTSMSIADPDVTSLEDVQRELDAIKAERRRRQRALYDGTLAGASRVTTKMPATSSKVRFPAAARTVIWANALHRKEKGEEGMLPYEPEACAPFQLLTMAYVPWSDGRLGPSPGHFMGSPVEALDLSPWDISFAGQIDALWRANRCLRTLKLSGRNLGPNQEEVLQALSRVGEQLTSLEITNCSGVTPGALGILLHGVGRQLVTLDLSGCLDMGDDHVAEVTRGCPALLSXXXXXXXGLTDQ------------GLSAATSKDGLSCLKRLLVSDCPGVGDLGLRAVLDGCAALQELSAGGCDRVTGRVFLGEMFAGGVATAPVRGLKLLELPDCQQLHPSALEWIAAGCSDLRSLVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGGSTALSFVADRSGRYLQHLDISDIPATAASVVGKFLRNCGKLEFVDLSGLVKVDESSFHGLGGGGGKSVDGDGDTSVADPRGRTDQAKHNSSAEMGINPARELNGKGSMTSEAPALPHLRAARMLRLPGLDNASVVRFANACPSLEELLLSDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPGLERLAVAMGDGNRSRFMTDADHPGNSGHARGGGRSGGSSGQHNTPHAPSRRAPYGGLLDCSVSSSTVFSSSSAAGTRTMRGSNLAFTGGVLLEAASRHCPRLTTLGLEGHEQLNFSSEHSPAEAFPCLTELRLVGCTAVNDTGLVALLKACPRVRSLSLIGSGVTQDALVKHSASSVMVSQSIAEVLPPVPFSSALADGDSRFTATSSRRTRTAESTGSPAQFVTAPPTPPPPKQGYRQLQTMESSTSMQQASDLAGGSCTSSSQSKHRVGQENGGSALAAGLRPAPHHKLHLAAAAVVSRFDEEQRALETLGRALRHFRDRRARALMSSARKICRRMLAYRFKSNTGRPDKMR 929

[Close]

BLAST of mRNA_Ecto-sp13_S_contig8551.19956.1 vs. uniprot
Match: A0A6H5L1P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P6_9PHAE)

HSP 1 Score: 1347 bits (3487), Expect = 0.000e+0
Identity = 772/944 (81.78%), Postives = 809/944 (85.70%), Query Frame = 0

Query:   14 MTSMSIADPDVTSLGDVQRELDAIKAERRRRQRALYDGTLAGASRATTKMPATSSKVRFPAAARAVIWAKALHRKEEGDEGMLPYEPEACAPFQLLTMAYVPRSDGRLGPSPGHFMGSPVEALDLSPWDISFAGQIDALWRTNRCLRTLKLSGRSFGPDQEEILQALSRVGEQLTSLEITNCSGVTPDALAILLRGXXXXXXXXXXXXXXDMGDDHVAEVAHGCPALSSLDLSSCMGLTDQGKSIHDKG--GKDLGLSAATSKDELPCLRRLLVSDCPGVGDLGLRAVLDGCVALQQLSAGGCDRVTGKAFLGEMFAGGVATAPVRGLKLLELPGCQQLHPSALEWIAAGCSNLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGLGGSTALSFVADRSGQFLQHLDISDIPATAASVVGKFLRNCGKLEFVDLSGLVKVDESSFRGLGGGGGKSVDDDGDTSAADPRGRTDQTKHNRSADIGVNPARELNGKGSMPSEAPALPHLRAARMLRLPGLDNASVVRFANACPSLEELLLSDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPGLESLAVAMGDGNRSRFMTDADHPGNSGHAGGGDRSRGSGGQHNTPHAPSRRAPYGGLLDCSVAPSTVLSSSAAGTRTMQSCNVAFTGGFLLEAAWRHCPRLTTLGLEGHEQLNFSSEHSPAEAFPCLSELRLVGCTAVNDTGLVVLLKACPRVRSLSLVGSGVTQDALVKHSASSVMVSQSFAEVLPPVPFSSTSAGGDSRLTATSSRRARXXXXXXXXXXXXXXXXXXXXXKQDYWQLHTMESSTSMKQASDLTGGSCTSSSQSKHRVGQENGGSALATGLRPAPHYKLHLAAAAVVSRFDEEQRALETLGRALRHFRDRRARVLNSSARKICRRMLAFRFKSNTGQPDKVRWL 955
            MTSMSIADPDVTSL DVQRELD+IKAERRRR RALYDGTLAGASR TTKM ATSSKVRFPAAARAVIWA ALHRKEEG+EGMLPY+PEACAPFQLLTMAYVPRSDGRLGPSPGHFMGSPVEALDLSP                 CLRTLKLSGR+FGPDQEE+LQALSRVGE+LTSLEITNCSGVTPDA  ILLRG                              L +LDLS C+ + D G  +H +   GK   +     +  LPCL+RLLVSDCPGVGDLGLRAVLDGC+ALQ+LSAGGCD VTG+AFLG +FAGGVATAPVRGLKLLELPGCQQLHPSALEWIAAGCS+LRS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GLGGSTALSFVADRSGQ+LQHLDISDIPATAASVVGKFLRNCGKLEFVDLSGLVKVDESSFRGLGG        DGDTS ADPRGR DQTKHNRSA+IGVNPARE +GKGSMPS APALPHLRAARMLRLPGLDNASVVRFANACPSL+ELL+SDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPGLESLAVAMGDGNRSRFMTDADHPGNSGHAGGGDR+   GGQHNTPHAPSRRAPYGGLLDCS + S+ +SSSAAGTRTMQ  N+AFTG  LLEAAWRHCPRLTTLGLEGHEQLNFSSEHSPAEAFPCL+ELRLVGCTAVNDTGLV LLKACPRVRSLSLVGSGVTQDALVKHSASSVMVSQSFAEVLPPVPFSS  AGGDSR TATSSRR R                 XXXX   + QL TMESSTSM+QAS LTGGSCTSSSQSK RVGQENGGSALATGLRPAPH+KLHLAAAAVVSRFDEE+RALE LGRALR FRDRRARVL SSARKICRRMLA+RFKSNTGQ DK++ L
Sbjct:    1 MTSMSIADPDVTSLEDVQRELDSIKAERRRRHRALYDGTLAGASRETTKMTATSSKVRFPAAARAVIWANALHRKEEGEEGMLPYKPEACAPFQLLTMAYVPRSDGRLGPSPGHFMGSPVEALDLSP-----------------CLRTLKLSGRNFGPDQEEVLQALSRVGEKLTSLEITNCSGVTPDAHGILLRGVGRQ--------------------------LVTLDLSGCLDMGD-GLVVHHRAFLGKQFLVEV---EGGLPCLQRLLVSDCPGVGDLGLRAVLDGCLALQELSAGGCDLVTGRAFLGGIFAGGVATAPVRGLKLLELPGCQQLHPSALEWIAAGCSDLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGGSTALSFVADRSGQYLQHLDISDIPATAASVVGKFLRNCGKLEFVDLSGLVKVDESSFRGLGGXXXXXXXXDGDTSVADPRGRKDQTKHNRSANIGVNPAREQSGKGSMPSGAPALPHLRAARMLRLPGLDNASVVRFANACPSLKELLMSDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPGLESLAVAMGDGNRSRFMTDADHPGNSGHAGGGDRTCRIGGQHNTPHAPSRRAPYGGLLDCSDSSSSAVSSSAAGTRTMQDSNLAFTGSLLLEAAWRHCPRLTTLGLEGHEQLNFSSEHSPAEAFPCLTELRLVGCTAVNDTGLVALLKACPRVRSLSLVGSGVTQDALVKHSASSVMVSQSFAEVLPPVPFSSALAGGDSRFTATSSRRTRTAESTGSQAQFVTAPPTXXXXXXGHRQLQTMESSTSMQQASYLTGGSCTSSSQSKRRVGQENGGSALATGLRPAPHHKLHLAAAAVVSRFDEERRALEILGRALRQFRDRRARVLMSSARKICRRMLAYRFKSNTGQLDKIQEL 897

[Close]

BLAST of mRNA_Ecto-sp13_S_contig8551.19956.1 vs. uniprot
Match: A0A368S2E7_SETIT (Uncharacterized protein n=22 Tax=Paniceae TaxID=147428 RepID=A0A368S2E7_SETIT)

HSP 1 Score: 60.1 bits (144), Expect = 1.880e-5
Identity = 55/197 (27.92%), Postives = 81/197 (41.12%), Query Frame = 0

Query:  167 RSFGPDQEEILQALSRVGEQLTSLEITNCSGVTPDALAILLRGXXXXXXXXXXXXXXDMGDDHVAEVAHGCPALSSLDLSSCMGLTDQGKSIHDKGGKDLGLSAATSKDELPCLRRLLVSDCPGVGDLGLRAVLDGCVALQQLSAGGCDRVTGKAFLGEMFAGGVATAPVRGLKLLELPGCQQLHPSALEWIAAGCS 363
            R   P + ++L A        + L+ + C+ V   ALA +                   G   +A +A  CP L+ LDLS+               G DLG +AA     +  LRRL +S C  + D+GL  V  GC  L+ LS   C  +T ++FL        A   +  L++L L GC  +   AL  +   CS
Sbjct:   64 RLLRPLRADLLPAALARYPSASRLDFSLCARVPDAALAAVSSSSGSSLHAVDLSRSWGFGAAGLAALAGPCPDLADLDLSN---------------GVDLGDTAAAEVARMRRLRRLSLSRCKALTDMGLGCVAVGCTDLRDLSLKWCLGITKQSFL--------AIMKLPNLQVLTLVGCIGIDDDALASLEKECS 237

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8551.19956.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8551.19956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LL53_ECTSI	0.000e+0	86.08	Hypothetical leucine rich repeat calmodulin bindin...	[more]
A0A6H5L1P6_9PHAE	0.000e+0	81.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A368S2E7_SETIT	1.880e-5	27.92	Uncharacterized protein n=22 Tax=Paniceae TaxID=14...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 211..236 e-value: 71.0 score: 7.9 coord: 336..361 e-value: 110.0 score: 6.5 coord: 724..749 e-value: 71.0 score: 7.9 coord: 362..387 e-value: 45.0 score: 9.5 coord: 277..302 e-value: 7.7 score: 15.4 coord: 545..570 e-value: 24.0 score: 11.6 coord: 184..209 e-value: 2.3 score: 17.2 coord: 442..467 e-value: 71.0 score: 7.9 coord: 237..261 e-value: 26.0 score: 11.3 coord: 571..597 e-value: 640.0 score: 0.4 coord: 303..329 e-value: 580.0 score: 0.8
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 108..326 e-value: 6.0E-26 score: 93.1 coord: 332..466 e-value: 8.6E-15 score: 56.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 505..617 e-value: 2.9E-12 score: 47.6 coord: 667..780 e-value: 8.2E-10 score: 39.5
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 159..401 coord: 394..598 coord: 673..771
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 136..581
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 512..764

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8551	contig	Ecto-sp13_S_contig8551:767..6651 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8551.19956.1	mRNA_Ecto-sp13_S_contig8551.19956.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig8551 767..6651 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig8551.19956.1 ID=prot_Ecto-sp13_S_contig8551.19956.1|Name=mRNA_Ecto-sp13_S_contig8551.19956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=958bp
MMLVRASNQTPAAMTSMSIADPDVTSLGDVQRELDAIKAERRRRQRALYD
GTLAGASRATTKMPATSSKVRFPAAARAVIWAKALHRKEEGDEGMLPYEP
EACAPFQLLTMAYVPRSDGRLGPSPGHFMGSPVEALDLSPWDISFAGQID
ALWRTNRCLRTLKLSGRSFGPDQEEILQALSRVGEQLTSLEITNCSGVTP
DALAILLRGVGRQLVTLDLSGCLDMGDDHVAEVAHGCPALSSLDLSSCMG
LTDQGKSIHDKGGKDLGLSAATSKDELPCLRRLLVSDCPGVGDLGLRAVL
DGCVALQQLSAGGCDRVTGKAFLGEMFAGGVATAPVRGLKLLELPGCQQL
HPSALEWIAAGCSNLRSLVVSGCMSTNPEGVELLAAGRPDLLRLGLAGCV
GLGGSTALSFVADRSGQFLQHLDISDIPATAASVVGKFLRNCGKLEFVDL
SGLVKVDESSFRGLGGGGGKSVDDDGDTSAADPRGRTDQTKHNRSADIGV
NPARELNGKGSMPSEAPALPHLRAARMLRLPGLDNASVVRFANACPSLEE
LLLSDSRMVTGACLAPLASLCPLLRSLGLDRCSAASDEPALADACRRLPG
LESLAVAMGDGNRSRFMTDADHPGNSGHAGGGDRSRGSGGQHNTPHAPSR
RAPYGGLLDCSVAPSTVLSSSAAGTRTMQSCNVAFTGGFLLEAAWRHCPR
LTTLGLEGHEQLNFSSEHSPAEAFPCLSELRLVGCTAVNDTGLVVLLKAC
PRVRSLSLVGSGVTQDALVKHSASSVMVSQSFAEVLPPVPFSSTSAGGDS
RLTATSSRRARKAKSTESASQFVTTPPTPPPPKQDYWQLHTMESSTSMKQ
ASDLTGGSCTSSSQSKHRVGQENGGSALATGLRPAPHYKLHLAAAAVVSR
FDEEQRALETLGRALRHFRDRRARVLNSSARKICRRMLAFRFKSNTGQPD
KVRWLLR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR032675	LRR_dom_sf