mRNA_Ecto-sp13_S_contig8544.19946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8544.19946.1
Unique NamemRNA_Ecto-sp13_S_contig8544.19946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8544.19946.1 vs. uniprot
Match: B2KWI9_ECTSI (Origin-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI9_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 6.020e-79
Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = -3 
Query:    2 VDGSGRSCHVCDKVHGRNGAFVKELPTKALLYTCMSSMRSEILPIFGRVFKTAKVLDTIDPEDGRVPDIRKIKDKCINIIAGMNTGKTYRANQLVEALGETLIAKTRVGDPGKSMPSRKPRVLIVTCRVSMASGLDF 412
            VDGSGRSCHVCDKVHGRNGAFVKELPTKALLYTCMSSMRSEILPIFGRV KTAKVLDTI+PEDGRVPDIR IKDKCINIIAGMNTGKTYRANQLVEALGETL AKTRV DPGKSMP RK RVLIVTCRVSMASGLDF
Sbjct:  314 VDGSGRSCHVCDKVHGRNGAFVKELPTKALLYTCMSSMRSEILPIFGRVLKTAKVLDTINPEDGRVPDIRTIKDKCINIIAGMNTGKTYRANQLVEALGETLAAKTRVDDPGKSMPPRKLRVLIVTCRVSMASGLDF 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8544.19946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B2KWI9_ECTSI6.020e-7994.89Origin-binding protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8544contigEcto-sp13_S_contig8544:5846..6259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size414
Hectar predicted targeting categorymitochondrion
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.6870968-UTR-Ecto-sp13_S_contig8544:5845..59131681464124.6870968-UTR-Ecto-sp13_S_contig8544:5845..5913Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8544 5846..5913 +
1681464124.7095175-UTR-Ecto-sp13_S_contig8544:6234..62591681464124.7095175-UTR-Ecto-sp13_S_contig8544:6234..6259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8544 6235..6259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.6972864-CDS-Ecto-sp13_S_contig8544:5913..62341681464124.6972864-CDS-Ecto-sp13_S_contig8544:5913..6234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8544 5914..6234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8544.19946.1prot_Ecto-sp13_S_contig8544.19946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8544 5914..6234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8544.19946.1

>prot_Ecto-sp13_S_contig8544.19946.1 ID=prot_Ecto-sp13_S_contig8544.19946.1|Name=mRNA_Ecto-sp13_S_contig8544.19946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MLFPGSPTLVFAMRVSPRASTSWLALYVFPVFMPAMMLMHLSFIFRMSGT
LPSSGSMVSNTFAVLKTLPNIGRISLLMEDMHVYNKALVGSSFTNAPLRP
CTLSHT*
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mRNA from alignment at Ecto-sp13_S_contig8544:5846..6259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8544.19946.1 ID=mRNA_Ecto-sp13_S_contig8544.19946.1|Name=mRNA_Ecto-sp13_S_contig8544.19946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8544:5846..6259+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGAAATCTAGGCCGGAAGCCATAGATACCCTGCATGTGACTATCAGAACT
CGCGGCTTCCGGGATGGCATGCTTTTTCCGGGATCGCCAACTCTTGTTTT
TGCGATGAGAGTTTCACCGAGGGCCTCCACGAGTTGGTTGGCTCTGTATG
TTTTCCCGGTGTTCATGCCAGCAATGATGTTGATGCACTTGTCCTTTATT
TTTCGGATGTCGGGGACCCTGCCGTCTTCTGGGTCGATGGTGTCCAATAC
CTTTGCAGTTTTAAAAACCCTGCCGAATATAGGCAGGATTTCGCTTCTCA
TGGAAGACATGCATGTGTACAATAAGGCCTTGGTCGGGAGTTCTTTCACG
AATGCGCCATTGCGTCCATGCACTTTGTCACATACGTGACAACTTCGCCC
AGAGCCATCCACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8544:5846..6259+

>mRNA_Ecto-sp13_S_contig8544.19946.1 ID=mRNA_Ecto-sp13_S_contig8544.19946.1|Name=mRNA_Ecto-sp13_S_contig8544.19946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8544:5846..6259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTTTCCGGGATCGCCAACTCTTGTTTTTGCGATGAGAGTTTCACC
GAGGGCCTCCACGAGTTGGTTGGCTCTGTATGTTTTCCCGGTGTTCATGC
CAGCAATGATGTTGATGCACTTGTCCTTTATTTTTCGGATGTCGGGGACC
CTGCCGTCTTCTGGGTCGATGGTGTCCAATACCTTTGCAGTTTTAAAAAC
CCTGCCGAATATAGGCAGGATTTCGCTTCTCATGGAAGACATGCATGTGT
ACAATAAGGCCTTGGTCGGGAGTTCTTTCACGAATGCGCCATTGCGTCCA
TGCACTTTGTCACATACGTGA
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