mRNA_Ecto-sp13_S_contig8502.19902.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8502.19902.1
Unique NamemRNA_Ecto-sp13_S_contig8502.19902.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: D8LN12_ECTSI (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN12_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 4.040e-137
Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1 
Query:    1 MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNV VRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH
Sbjct:    1 MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A7S1UDR8_9STRA (Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDR8_9STRA)

HSP 1 Score: 263 bits (673), Expect = 5.830e-87
Identity = 136/191 (71.20%), Postives = 162/191 (84.82%), Query Frame = 1 
Query:   55 AERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            A+    +M  TLDEPVSETIMRDLR V  KLK+VL PR DQ+GV+ KLKDWDLWGPL+VCLTLS++LSV+AP  Q ALVFA+VF V+WCGAA+VTLNAQLLGGTISFFQSVCVLGYCVFPL ++A+VC+ LSL    ++ VR  VV++GFVWATRAS VFI++II  ERK+LAVYPVFFFYTF+SWMI++ 
Sbjct:    2 ADNMVTAMPTTLDEPVSETIMRDLRQVADKLKVVLLPREDQEGVVQKLKDWDLWGPLLVCLTLSLLLSVTAPESQKALVFASVFFVIWCGAAVVTLNAQLLGGTISFFQSVCVLGYCVFPLTIAAIVCVFLSLIGLGHIAVRCIVVVLGFVWATRASVVFIAKIIKAERKILAVYPVFFFYTFLSWMILLQ 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A7S2V1N2_9STRA (Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N2_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.150e-83
Identity = 136/181 (75.14%), Postives = 156/181 (86.19%), Query Frame = 1 
Query:   85 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            TLDEPVSETIMRDL+ V  KLK+VL PR +Q GVL KLK+WDLWGPLMVCLTLS++L  +APADQ ALVFAAVFVVVW GAA+VTLNAQLLGGTISFFQSVCVLGYCVFPL V A+V L++ L  F N+ V++ +V +GF WATRAS VFI++IIS +RK+LAVYPVFFFYTFISWMIVI 
Sbjct:   19 TLDEPVSETIMRDLKQVYGKLKVVLLPRENQQGVLHKLKEWDLWGPLMVCLTLSMLLCATAPADQTALVFAAVFVVVWVGAAIVTLNAQLLGGTISFFQSVCVLGYCVFPLTVVALVLLLVRLLIFNNIFVKLVLVAIGFAWATRASVVFIAQIISPQRKILAVYPVFFFYTFISWMIVIQ 199
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A836CPM4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPM4_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.810e-83
Identity = 134/200 (67.00%), Postives = 164/200 (82.00%), Query Frame = 1 
Query:   28 FDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            +DG +G         +  NTLDEPVSETIMRDLR VG+KLKIVL P+GDQ+GVL KLK+WDLWGPL+VCL LSI+LS +APA+QGALVFA+VFVVVWCGAA+VT+NAQLLGG ISFFQSVCVLGYCVFPL++++  CLI      +  + R  +V+VGF+W+TRAS VFI +IIS ERK+LAVYPVFFFY F+SWM+++ 
Sbjct:    7 YDGRLGGAPGN---MAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFI-RALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: I2CPI6_NANGC (Protein YIPF n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPI6_NANGC)

HSP 1 Score: 239 bits (610), Expect = 3.650e-77
Identity = 122/181 (67.40%), Postives = 156/181 (86.19%), Query Frame = 1 
Query:   85 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            TLDEPV +T+ RDL  VG+KL++VL PR +QDGVL KLKDWDLWGPL+VCLTLSI+LS++AP +QGALVFAAVF VVW GAA+VT+NAQLLGGTISFFQS+C+LGYCVFPL ++A+  L++ L  F ++VV+  VV VGF WATRAS VFI ++I+ ERK+LA++PVFFFYTF++W+++I 
Sbjct:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTISFFQSLCILGYCVFPLDIAALANLLIGL-AFQSLVVKAVVVAVGFAWATRASVVFIGQVIAPERKVLALFPVFFFYTFLAWLVLIQ 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A1V9Z1I2_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1I2_9STRA)

HSP 1 Score: 226 bits (575), Expect = 5.090e-72
Identity = 113/184 (61.41%), Postives = 149/184 (80.98%), Query Frame = 1 
Query:   76 MMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            ++NTLDEPVSETIMRD+R VG+KLK+VL P+   D  L  L+DWDLWGPLMVCLTLSI+LS++AP +Q A+VF +VFVVVW GAA+VT+NAQLLG TISFFQS+CVLGYCVFPL+++ + C +  + +  +V +R+  V +GF+W+TRAS VF+S+++  ++K L VYPV  FY FISWMI+I 
Sbjct:   13 VVNTLDEPVSETIMRDVRLVGSKLKVVLAPKNTSDETLQALRDWDLWGPLMVCLTLSIMLSMTAPTNQSAMVFTSVFVVVWVGAAVVTINAQLLGSTISFFQSICVLGYCVFPLVIATIACFLTRVVS-SHVAIRLVFVGIGFIWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILIQ 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A067CCZ0_SAPPC (Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCZ0_SAPPC)

HSP 1 Score: 224 bits (571), Expect = 2.060e-71
Identity = 115/182 (63.19%), Postives = 148/182 (81.32%), Query Frame = 1 
Query:   82 NTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            NTLDEPVSETI+RD+R VG+KLK+VL PR   D  L  L+DWDLWGPLMVCL LSI+LS++APA+Q A+VF +VFVVVW GAA+VT+NAQLLG TISFFQS+CVLGYCVFPL+++ + C +  + +  +V +R+ +V VGFVW+TRAS VF+S+++  ++K L VYPV  FY FISWMI+I 
Sbjct:   15 NTLDEPVSETILRDVRLVGSKLKVVLMPRNTSDETLQALRDWDLWGPLMVCLMLSILLSLTAPANQSAMVFTSVFVVVWVGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLACFLTRVVS-SHVTIRLILVGVGFVWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILIQ 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: F0Y2B8_AURAN (Protein YIPF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2B8_AURAN)

HSP 1 Score: 223 bits (569), Expect = 3.760e-71
Identity = 123/181 (67.96%), Postives = 145/181 (80.11%), Query Frame = 1 
Query:   85 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 627
            TLDEPV ETIMRDLR VGAKLK+V+ PR  Q+GVL +LK+WDLWGPL VCL LSIVLSVSAP  Q ALVFAAVFVVVW GAA+VTLNAQLLGG ISFFQSVC+LGY +FPL V A++CL+L      ++++R  VV V F W+TR S VF  EII  +R+ LA+YPVF FY+FI+WMI+I 
Sbjct:   12 TLDEPVRETIMRDLREVGAKLKLVILPRVSQEGVLDRLKEWDLWGPLAVCLALSIVLSVSAPEAQRALVFAAVFVVVWVGAAIVTLNAQLLGGRISFFQSVCILGYSIFPLNVGALLCLVLHPVT-KSLLLRALVVGVCFAWSTRVSVVFFGEIIEAKRRALAIYPVFGFYSFIAWMILIQ 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A485KII9_9STRA (Protein YIPF n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KII9_9STRA)

HSP 1 Score: 223 bits (567), Expect = 9.830e-71
Identity = 112/185 (60.54%), Postives = 146/185 (78.92%), Query Frame = 1 
Query:   70 QSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 624
            Q    TLDEPVSETI+RD+R VG+KLK+VL P+   D  L  L+DWDLWGPL+VCL LSI+LS++AP +Q A+VF  VFVVVW GAA+VT+NAQLLG TISFFQS+CVLGYCVFPL+++ +V  +  L +  +V VR+ +V VGF+W+TRAS VF+S+++  +R+ L VYPV  FY FI+WMI+I
Sbjct:   15 QKKETTLDEPVSETILRDVRLVGSKLKVVLMPKNTSDQTLQALRDWDLWGPLLVCLVLSIMLSITAPTNQSAMVFTGVFVVVWAGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLVNTVFRLASLGHVAVRIVIVAVGFIWSTRASVVFMSQLVPPKRQALTVYPVLLFYLFIAWMILI 199
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Match: A0A8J2SB60_9STRA (Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB60_9STRA)

HSP 1 Score: 220 bits (560), Expect = 9.330e-70
Identity = 122/180 (67.78%), Postives = 139/180 (77.22%), Query Frame = 1 
Query:   85 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 624
            TLDEPVSETI RDLR VGAKLK+VL PR  Q GVL +LK+WDLWGPL VCLTLSI LS  AP  Q ALVFAAVFVVVW GAA+VTLNAQLLGG ISFFQSVCVLGY +FPL   A  CL+L      + ++R+AVV   F W+TR S VF SEII  +R+ LA+YPVF FY F++WMI+I
Sbjct:   13 TLDEPVSETIRRDLREVGAKLKLVLLPRASQHGVLDRLKEWDLWGPLAVCLTLSIALSAGAPESQRALVFAAVFVVVWAGAAIVTLNAQLLGGRISFFQSVCVLGYSIFPLDCGAFACLLLHALT-RSFLLRLAVVGTCFAWSTRVSVVFFSEIIEAKRRALAIYPVFGFYAFLAWMILI 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8502.19902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN12_ECTSI4.040e-13799.52Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S1UDR8_9STRA5.830e-8771.20Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430... [more]
A0A7S2V1N2_9STRA1.150e-8375.14Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A836CPM4_9STRA1.810e-8367.00Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
I2CPI6_NANGC3.650e-7767.40Protein YIPF n=1 Tax=Nannochloropsis gaditana (str... [more]
A0A1V9Z1I2_9STRA5.090e-7261.41Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A067CCZ0_SAPPC2.060e-7163.19Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 Re... [more]
F0Y2B8_AURAN3.760e-7167.96Protein YIPF n=1 Tax=Aureococcus anophagefferens T... [more]
A0A485KII9_9STRA9.830e-7160.54Protein YIPF n=2 Tax=Aphanomyces TaxID=100860 RepI... [more]
A0A8J2SB60_9STRA9.330e-7067.78Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8502contigEcto-sp13_S_contig8502:362..6527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score392.5
Seed ortholog evalue1.2e-106
Seed eggNOG ortholog2880.D8LN12
Preferred nameYIPF6
Model size630
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791
Exons6
EggNOG free text desc.intestinal epithelial cell development
EggNOG OGsCOG5080@1,KOG2946@2759
Ec32 ortholog descriptionterbinafine resistance locus protein (yip1)
Ec32 orthologEc-27_000980.1
Cds size630
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8502.19902.1prot_Ecto-sp13_S_contig8502.19902.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8502 362..6527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.891964-CDS-Ecto-sp13_S_contig8502:361..4041681464120.891964-CDS-Ecto-sp13_S_contig8502:361..404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 362..404 +
1681464120.904071-CDS-Ecto-sp13_S_contig8502:1534..16051681464120.904071-CDS-Ecto-sp13_S_contig8502:1534..1605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 1535..1605 +
1681464120.9138036-CDS-Ecto-sp13_S_contig8502:2893..29841681464120.9138036-CDS-Ecto-sp13_S_contig8502:2893..2984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 2894..2984 +
1681464120.9250274-CDS-Ecto-sp13_S_contig8502:3796..39591681464120.9250274-CDS-Ecto-sp13_S_contig8502:3796..3959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 3797..3959 +
1681464120.9349053-CDS-Ecto-sp13_S_contig8502:4987..51391681464120.9349053-CDS-Ecto-sp13_S_contig8502:4987..5139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 4988..5139 +
1681464120.945306-CDS-Ecto-sp13_S_contig8502:6417..65271681464120.945306-CDS-Ecto-sp13_S_contig8502:6417..6527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 6418..6527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8502.19902.1

>prot_Ecto-sp13_S_contig8502.19902.1 ID=prot_Ecto-sp13_S_contig8502.19902.1|Name=mRNA_Ecto-sp13_S_contig8502.19902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLK
IVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAA
VFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILS
LFNFMNVVVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYT
FISWMIVIH*
back to top

mRNA from alignment at Ecto-sp13_S_contig8502:362..6527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8502.19902.1 ID=mRNA_Ecto-sp13_S_contig8502.19902.1|Name=mRNA_Ecto-sp13_S_contig8502.19902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6166bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8502:362..6527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAAGCTATGGCAATGGCAGAGTTTGATGGTGGCATCGGTGAGTT
CAACCTGTTTGTTCCAATTAGCATCTTTTGCGGCGTATCTGGAGTGAGAA
ACAGCGTGTGTTGGGACCGCAGTCTATCAGTCTGTGCCGTGGCCCCAAGA
GTTGTGCAAGGGTCGAGCGAGAGAGAGGGAGAGAGAAGAGAGAGCTTTTG
TGATAGATTGCGTTACAAGCGTACGGATGTGCTCACACCTTGTTTCGTGC
TCCCTAAGGGGTCTGTGCAGAATTTTGAACCGGACGTTTTCCGGACGGAG
GTTTTGCGGGCAGAGGGCAGCAGCACCAGGCGGATCGTTACACACAGCAG
AGTACTTTTAGGCTCCGAGGGCACGACCAACACACGCGAGGACACGCAGC
AGCACAACCCGACAGATAACAGTTTTTTCAGCTGCAACACACTTGATGAA
TGTGCGAGCTCTTGGGGCTCTGCTCTTAGAGCATTGAGATTGCTTTAGAC
ACAAGAACAGCGCTATGCACAGCGCGAAGTAACCTGCTGACAGCACCTAA
AGGTGACCAGGCTTACCGCGGGCAGAGCGCGTCCTCTACAGCGCTGCACA
TGGCTTTCGGCTAACATCCGGCGGTGCGACGCTTTGTTACGAAATTCGGA
ACAACGAGCCTGCGGCATATCAACGTTGCGTACAACAGAGTGCGGCCGGC
TGTACTTGTACCAAGCGTGAGACCCAACCGACCGAGCTTCAGAGTCAGAA
ACTCTTGACATGTGTGTTACCTATCCTTCTTCCGTCTCACTTGTCAGCAG
CTTCGCACTCTACGATCGACGATGCCGTGTGCAGCGCGGTGATGTTGTTC
ATAAGATACGAGCATTTACTTCCGAAAGAACACCGTGTCAGAACCCTATG
TAAATTTACCGTTGGTAGCTTGTCTTGTTGGTCATATGCACATGTGTATG
TATACCACGTCGCAACGACTGCTGTAGACAGTTTAGACGTACGCCTGTGA
CACAACATTCACGTGATTATCTAACTGGAGCCCATCTGACATGTAGACGC
ACTGTTGTGGAGTGTTACGGGAACATGTTTGGGACATAGCAGGCTTTGTT
GAACCCCCCACCCCCCCTTTTCGCTCCTCGCCTCCTTTTCGCACGCTCCT
CGCCTCCTTTTTTTCGCACGCAGGTATGCAAACAGCAGAACGAACACCGC
AGAGCATGATGAACACGCTGGATGAGCCAGTCTCCGAAACCATTGTGAGA
GTCACAACATTCAAACAATTTACGCTTGGTGTTTTCGGTACCCTCTTCTT
GGGATGTGCTTGTGCGAGGGTCCCCGAATAAGGCGGTCTGGACGTGCAGG
TCGCCCTTTTTGTATATGGCTGGTGAAAGTCACTGGCATGGCCGGGACAA
TCAAGTTGCTCTAAACGTTGAATACGGCATCTGCCCGATCGTAAGGCGTC
CACTTTCAGCTGCCCCACCACCGCCTTGTTCGTGGACACCCCGCTGTACT
GCAATCCAGCCTGCACCAACCAACGATTTCGTCATCGTAGAATACTTGTT
TCTGCAGTCTCCACGCCTGCCCATCGTGCATTCCCTATGGCTTTACAACC
GCCATCACATCATTGGACCAATCTAGTTTTCGGTTGGTAAAGCCTTGGCT
GCGGGTACGATCGCACTATTGTACTCACATGCAGACGGTCTACGATCTAC
CCATGTGCCACGATTAAATTGGCATGATGTTGCGGTCTATACACCCTGTA
GGACCGGGGAGAGTTCACCGTACGAAAAGGGATAGCCAGTTTTCGGGGGG
GTGTACTCATAGCCGTGCAATTTTCGGAGTGGGGGTAGGGGGACCCCACG
GTAGGGTTGAGGCCCGCCGGTAACTGGGGCTATCCGGATACCCGGCCTAC
CCGGTTACCCGGCTATTTTCCGGAGATGAGGCCCGAACCCGGTTCGGGTA
TTTTGAGAGCCGGGCATGCCCGCCGGGTAGACGGGTACCCGTCCAATGGA
CCTCAACCCTACCCCACGGGCAGCTATTTACTGCGGTGTTTGCTTGTGTT
CGCGCTATTTTTCCCAGCAGATCCCGCTCACGTCGTGTGGGTCGTGTGGT
TACGAGGCATACATTTCATTCAGTGGCATGGTGTAAGCGGAAGAAGGATT
ACACCGTTCCGTACATATTTCCACATTTTTTTGGAAGACAAGGGCTATAT
GGTACGCCAACAGTTGACAACAGTGTGTTTGCCCCCTCGTTGTTGCGAAC
GAGTCGTTTGTGGTTCCGAAACGAAGGGCTCAAAGCGGTGCGTAGGCGGC
GTAGCTACTTTTGAGTAGACGCTCGATCGCACTCCCTTCGGGCTGTGTAG
CATCCGTTCGCAACGCGGAGGAGCTGAGGTGTCCGTTTGGGTGAGGCACT
ATTCATCGTATGAAGCCAACGAAGAAACAGGATTAAACCAGCAACAACCC
ACCACCACCAACAACAACAGACACAACAGCGACTCAATAGCCAAATCTGT
CGTCCCTTGTCACCATCGACGGTCGTTTTCAGATGCGAGACTTGCGATCC
GTGGGAGCTAAGCTAAAGATCGTTCTCAACCCAAGGGGAGACCAAGACGG
AGTGCTCACCAAGCTCAAGGACTGTGAGTGCCGTGCAGCCTGCCTTTGGA
CTCACAAGGCCTCTCTGATTGTTTCTCGGACTATCGCACCTACCCTCAGC
CTGCAACACCCCACGTTCATGTCCGGATACGGTAGCACGGCCTCATAATT
GTGCGGCAGCATGGCCCTTGGGGTGTGTGTGCCACTTGAGACAGTCTTCC
CCTCGCCGTGTCAAGAAATTAGCTGAGTCGCATGAGGTGGTGCGGTTGCT
TGCAGGTTTGGCGCGTCGTGCTACTAGTTCTACTTGTCTCTCGGAAGTCA
CTTTCTCTCCCGATCACCGACTCCTCCTTGCATGTCTGCTCTTGTCTTGT
GGTGTACCCTGATGTCGTGATTGCCGCGGGATGCCTTGCCCTGTACCCGT
GCCTGTCTCGCCGAATGATAGAGCGAGCGTGCACAACGCAGGTGGTCCAT
CGTGTCATCATCAGGCGTTTTTGTTGTGTTCAAATGAACCCAGAGGGTCA
ATTCGATCGGCCGCTATTATAGATATATGTTGTGTTGTCGTGTCAAGATT
TGTTTCGACCGCTTTCGTTAGTAGTGCCCCTCCATGGTGAAGATGATGCC
AGGAACTGTGCTACGTTCGGTGAGAATTTTCGCCGGCGGTTTCGACGGAG
GGAAGGGCAAAATCGTTGAGTTAGAGATCAAGTGACCCCCCCCCCCCTGC
TGGATGATAGGCCAAAATCGGAAACTCCCCGTGTCCTGGCTATTGAATAG
CGCGAGCATATGCATACTTACGGCACGCTCACGATACTGATTGCTACCAC
TCCCCCCCCAAAAATCTGCGCTTTTTCGTCGCCAGGGGACTTATGGGGAC
CGCTGATGGTGTGCCTGACGCTGTCGATCGTTCTGAGCGTTTCGGCCCCA
GCGGACCAGGGAGCGTTAGTGTTCGCGGCGGTTTTTGTCGTGGTGTGGTG
TGGGGCAGCCCTGGTGACACTCAACGCTCAGCTGCTGGGGGGAACAATGT
GAGCTATACGAGGGATGGGACGAAATGACAAAAAATGAAGACAAGGAGAG
ACACGGTAGGTGGAGGGAAACGCTGAAGCTAGAGAGAGAGGGAGCAGGAG
GGAAGGAGAAAGAAGATGGATGGAGAGATCGAGTTTTTTACGAGAACAAG
AGACGCAAAGAGAGCATATACACCCAACGAGCTTGAATAGCAAAATGCAA
GACACGTGGATAGAGAGAGGGCGGCAATCACAGCCGGACTTTATTTGGTA
GAGAGATATTAGTAGCGGGAAGCAGCACAGCGCGATGTCCAGGAAAGTAG
GTGCGGCGAACGCATATACTTGGCGAACAACAGCAGCTAGTCCAGAGGGC
TGTGTGGTCCTCAGCATACCTGGTTTGCGCAGTGTTCGCAGCTGTATCCG
TGGCGGTTACACTGAGGACTGGGGCGGGACGGAGCCTTGAGTGGCCCGTC
GTACCGCGCAGATCTTTCGGAGAGGGGGGGCGCCGCGTGAGAGGAGATGC
GCATAGTATCAGGGTACAACAACAACACGCTCTGTCACCCCCCGGGTCTC
GACTGTGTGGCCGTTTGCGCAAACAATCACGACAAGGTAAAGGCGGTCGG
GCAAGTACTACACGAGTAATTGCGCAGCCGCAACATACTCTTGTTGGATT
GTTTCGCCAGTAGCTTGTTTGGAGCCGGGGGGCGGCGGGGGGGGGATGAC
CTTAAGAGGGGCAAAGCGGTGGGTGGGTAGCGGGGTGTACTCATAGTCGT
GCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTGGATGGGAACAT
TTGACTGGTTGGCTTGGTGGAGCTGTGGGTAACGGTGGCAGAACGAACGG
CAAGTTGGAAGGACGGTCGGTAGTTGTGCAGGGTAGACTGTTCCACCGTC
AACCAAAAAACAAATATTTCGTGATGAGCTTGCATGTCTTGTGGACCAAG
TTTTGTGAAACAGGCGCCAGACTCCTCGTCATCTATCCCCCCCCTCCCCT
GTTCCCCCCACCGCCCGCGTGCGCAGCTCCTTCTTCCAGAGCGTGTGCGT
GCTGGGTTACTGCGTCTTCCCGCTCCTGGTGTCGGCGGTGGTCTGCCTCA
TCCTGAGCCTCTTTAATTTTATGAACGTCGTCGTGCGTGTGGCCGTTGTG
CTGGTAGGCTTCGTCTGGGCAACCCGAGGTATGCATGCGTCCTACACGTT
GTGTGCATCCTCTGGCGGCGCATGTGCGCGAAATAGTTAATAGACATGTG
GGTACCGAGTACTGCCGCGAGTCTTCGCCCTGTATGGTCGGACGGGGGGG
GGGGGGGGGGTGGGGGGGTGTTTTGGGGGGCCCGGGGGGGGGGGTTTTTG
GGGGGAAGTTGGGGTTGTCGGGGGAAAGGATCGCCGGCCTGTTTTGTTAG
TGGTTGCTTGCCGGTAAGCTCGCGTTGTCTGGGGAAACGATCGCCAGCCT
GTCTTGTCTGAACGATTGGCCGCGCACATGACGCGGGATGCTCCACAGGT
AGTGCGTGCGGGCGGATGCGGGACGATCACACACCGGTGACTGCTTTGTG
GAGGGGCAACACCGTGTAGCACCTTTGAAGGCGCTCGCGGTCTGTGTTCT
TGACTTGTTGTTTGTGGAATGGATACCACCAAGACACTTGCTCGAAGACG
CACATGGGTTCATTCCACCACTACCCCCTCATTTCCTGGTAGGAACACAT
CGTCCTTTTCAATTGTCTGTGGTTTTACGGTAAACACCATCCATCTGACA
TTCCGAAAGCGTTCCTTTGGGTAGTCACGGTCTAGAGTCTGGAAGGCGAC
TTGGTTTGGTCTTGCTTACTTCCCTAACAATTCATGGGTGACGACTGCCT
AAAATCAAGCACGATGTGTCCATGGTATGATTTTTCTCCGCCGAAGAGCC
CAAATCGACACACAGAACGCTTTATTTATGTTCTTTACCCTCTTCCACCT
CACTTTCTTCTGCAAGTAGTCGAGGCAGCCATGTCTTCTTCTGGATTTCT
GTTCTCAATGTTATTTCAAATGAAACAAAGTGTTTGTTGCCTGCCAGCCA
GTACCCGACCCCTCTCTTCTCACGAAGGCACGGAATCTAGACCAAAAGAT
ATGGCTTGAGTTCATCTCAGACATCGTTGCAAAGCCCCACGCTATCATGT
GTTGTTTCTGTTGGCCATCCTGTCTTCGTCGCTTGTGCCATGCTCTTTTA
TCGCCCAAGGGCAGTGTTTTGCTCTGTTTTCGGTTCCCCACCCCGACCCC
AAAGCGGGGCGTTCGTGTGATTTTATGTTTGTTCTTCCGTCCCTACAACT
GTTGTTGTCTCCGACTCTCTGTTTCTTGCCGAGTTCCTTATGCTGCTCCC
CCTCTCCTTCTCCCACCCAATAAGCCATTGACCAACGACATGGCATACCT
CGTTGTTTTGCGTTTCTGTTTCGGATCTCTGTTCGTTACCCTCCTCCCAA
TGACAGCGTCGAAGGTGTTCATCTCGGAGATCATCTCAGACGAGCGCAAG
ATGCTGGCCGTGTACCCAGTGTTCTTCTTCTACACCTTCATCAGTTGGAT
GATTGTTATACACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8502:362..6527+

>mRNA_Ecto-sp13_S_contig8502.19902.1 ID=mRNA_Ecto-sp13_S_contig8502.19902.1|Name=mRNA_Ecto-sp13_S_contig8502.19902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8502:362..6527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAAGCTATGGCAATGGCAGAGTTTGATGGTGGCATCGGTATGCA
AACAGCAGAACGAACACCGCAGAGCATGATGAACACGCTGGATGAGCCAG
TCTCCGAAACCATTATGCGAGACTTGCGATCCGTGGGAGCTAAGCTAAAG
ATCGTTCTCAACCCAAGGGGAGACCAAGACGGAGTGCTCACCAAGCTCAA
GGACTGGGACTTATGGGGACCGCTGATGGTGTGCCTGACGCTGTCGATCG
TTCTGAGCGTTTCGGCCCCAGCGGACCAGGGAGCGTTAGTGTTCGCGGCG
GTTTTTGTCGTGGTGTGGTGTGGGGCAGCCCTGGTGACACTCAACGCTCA
GCTGCTGGGGGGAACAATCTCCTTCTTCCAGAGCGTGTGCGTGCTGGGTT
ACTGCGTCTTCCCGCTCCTGGTGTCGGCGGTGGTCTGCCTCATCCTGAGC
CTCTTTAATTTTATGAACGTCGTCGTGCGTGTGGCCGTTGTGCTGGTAGG
CTTCGTCTGGGCAACCCGAGCGTCGAAGGTGTTCATCTCGGAGATCATCT
CAGACGAGCGCAAGATGCTGGCCGTGTACCCAGTGTTCTTCTTCTACACC
TTCATCAGTTGGATGATTGTTATACACTGA
back to top