mRNA_Ecto-sp13_S_contig8493.19887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8493.19887.1
Unique NamemRNA_Ecto-sp13_S_contig8493.19887.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8493.19887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8493contigEcto-sp13_S_contig8493:3165..5512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1072
Hectar predicted targeting categoryother localisation
Exons4
Cds size264
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8493.19887.1prot_Ecto-sp13_S_contig8493.19887.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8493 3691..4885 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464119.2532196-UTR-Ecto-sp13_S_contig8493:3164..36901681464119.2532196-UTR-Ecto-sp13_S_contig8493:3164..3690Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8493 3165..3690 -
1681464119.301964-UTR-Ecto-sp13_S_contig8493:4885..48981681464119.301964-UTR-Ecto-sp13_S_contig8493:4885..4898Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8493 4886..4898 -
1681464119.311017-UTR-Ecto-sp13_S_contig8493:5243..55121681464119.311017-UTR-Ecto-sp13_S_contig8493:5243..5512Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8493 5244..5512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464119.274693-CDS-Ecto-sp13_S_contig8493:3690..37531681464119.274693-CDS-Ecto-sp13_S_contig8493:3690..3753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8493 3691..3753 -
1681464119.284081-CDS-Ecto-sp13_S_contig8493:4222..43481681464119.284081-CDS-Ecto-sp13_S_contig8493:4222..4348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8493 4223..4348 -
1681464119.2926638-CDS-Ecto-sp13_S_contig8493:4810..48851681464119.2926638-CDS-Ecto-sp13_S_contig8493:4810..4885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8493 4811..4885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8493.19887.1

>prot_Ecto-sp13_S_contig8493.19887.1 ID=prot_Ecto-sp13_S_contig8493.19887.1|Name=mRNA_Ecto-sp13_S_contig8493.19887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MVHDLTQWAVPFHMNDFKREEIDREAFVELCLSSKILDSSPLAPHFLAQP
QALWDGWDNLVAALGRKQEMRSGTLQDSKRPAAKHDP*
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mRNA from alignment at Ecto-sp13_S_contig8493:3165..5512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8493.19887.1 ID=mRNA_Ecto-sp13_S_contig8493.19887.1|Name=mRNA_Ecto-sp13_S_contig8493.19887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8493:3165..5512- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGAATAGGCGGCTAACACGACCGAGATTGAACTCTGAATCAAAAGCTC
TCCCTGCAACGCCTCCATTCATTGAGCACCGTCGGCCGAATGCTTGTACG
AAGACCGAACATGCTCCAAAGGTTGGTGGAGATCATCCACGTCAACTTCG
TTCTCACTCCGACACCACTCCTCACCATGTCTCCCCGTAGGTTGCAAGAT
CCAATGGGACAACACGCACACACTGTTTAGGGGGCTATGGGCGCAGGAGG
AGACGGATGTTGGCAAAAAGTGCGTATGTCCAATGAACTCCGATCGTGAT
ACGAGAAACTTGTGGGAATGCTTCCGTGTTACGCGTGTCGCGCTGGGATG
GCCTGTGGAGTTTGCCTCGCCCAGAGAAGAAAACGAACTGACTAATTGTC
GTTGTTGTTGTTGTTGTTGTTGTTATTTATGTTATATGTCGCTGTTTTCT
GTCCTGATCCCGTTGTTGCTATTGCCTCGTCGACAATTTTGTTTATTTTC
TGTGGACATTGCTACAGAGGCCATCATCAGCAAAATGTTCCCATCGCGAT
CGAAAACACATGCCTGTAGTGCCCTCAACAACCATGTGCTCGTTTCCGAC
GCTGCCGACCTCAGGTATTGGGTGCACATGGTCCATGATCTGACACAGTG
GGCGGTGCCGTTTCACATGAACGACTTCAAGAGGGAGGAGATCGACAGAG
AGGTATGTCTATTCCCTTCAGGACAGTACAAGAAGTCCACCGTACGCAAT
TATTGGTCGAAAAGCAATATTTTTGTACACTACTGATTTGGCAGCACCTG
TCCACAGCCGCAGGGGGGATCGACACAGGAAAAGGCGCGTGGTCGGCGGT
CCGGATTTTTTTTGGCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTGTGGATTCTCTCT
CCACGAACGTGTAGGAATGTCGGGAGAATTGTCAGAACTTTGACCGTCGA
CAGTACCTCGGAGTTGCATCTCACCGCTGCTAGCACGAACAACAGTACCT
CGGATTTACATCTCAACGCAACTAGACGAACAACTCACATGGTTCTCGAG
CGGCTTTTTCCTGTTGATGCGTTCCATTCTTGACGCACGTTGCTACCACG
TTCTGCTATTACAGGCGTTTGTTGAGCTCTGCCTCAGCTCAAAAATCTTG
GACAGTAGTCCTCTGGCGCCTCATTTTTTGGCCCAGCCGCAAGCACTGTG
GGATGGATGGGATAACCTCGTTGCTGCATTGGGGAGGAAGGTCTGTTGTT
GGTCGCAGTCAGGAATTCTCATTAGTCTGGAAGATTGTGTCCCACTCTAT
TATCATGAAGTATACTAATGACAACGGGAACAGAGGCAGACCTCCGCAGC
GAGCCCCACGGCAAGCCATTGCAACCCACATGCGCTTCGAGTATCCTGAA
GCACGCTGATTTTGTAGGTATCATCAAGCGAACATCCAAACAGATTCAGG
CGATGTTTCTCCTTTAGATCAAGCGCGAGCTAAAGAAAACCCGTCGAGGT
AAAATAATATTGGTTTGTCGAGGGTGAACGACCAAACGAACGGAAAAGAA
GTTTGTCTTGGAGACGGGGAGACAGGGACAGAGACAGAGAGGGCGCGACA
GAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGCGACAAACAGA
CCGACAGACAAATCGAAGTAAACCTGATTACACGTTATGTGTTTTCGCGT
GTTGAACAGCAGGAAATGAGAAGCGGAACCCTCCAGGATTCGAAACGGCC
GGCGGCGAAGCACGACCCTTAGTAATCAGGCACGGGAGCGCTGGGTCATT
GTTGTTGCTGACGTGGTCATGGCCTTCATCGTCGTCATCGATGTCGTGGC
CGATATTGTCAGTCTTCTTGTTAACGTTGGTGATGTGCGCCCACAAGATT
GGTGCCTCGGCCAACGCTATGGTCCTGCGCAACCCTTCTTGAGCTTTCCA
GCAACGCAAAGGTGCTGATCTGGCCGATATTGACTGGTTTCGTACTACTG
TACGTAGATCGTCTTCAACGCATACATACATTGATCCAAAATATGGTGCA
GTATGAACGATGTGATGTGCGTCTGTCCCCGTACAACGTGTTTAGGGCAT
GAATAGGTAGGTTAGGTGGATGAACGCAAGCAAATTGGCGAGCAGCAAGC
AAGCTTGCCACACGGGCTCTCCGATTTAAGCGTTGTCCGACCCCTCCCCC
CCCAAGTTGAGTGGTGTTCCTTCCCCTTTCCAGCTCCCCCCTTCCCACGA
ATCGTTACCCTAATAGGGAAAAACGATGAAGAATGAACTTGTTTGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8493:3165..5512-

>mRNA_Ecto-sp13_S_contig8493.19887.1 ID=mRNA_Ecto-sp13_S_contig8493.19887.1|Name=mRNA_Ecto-sp13_S_contig8493.19887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8493:3165..5512- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCATGATCTGACACAGTGGGCGGTGCCGTTTCACATGAACGACTT
CAAGAGGGAGGAGATCGACAGAGAGGCGTTTGTTGAGCTCTGCCTCAGCT
CAAAAATCTTGGACAGTAGTCCTCTGGCGCCTCATTTTTTGGCCCAGCCG
CAAGCACTGTGGGATGGATGGGATAACCTCGTTGCTGCATTGGGGAGGAA
GCAGGAAATGAGAAGCGGAACCCTCCAGGATTCGAAACGGCCGGCGGCGA
AGCACGACCCTTAG
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