mRNA_Ecto-sp13_S_contig8479.19868.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8479.19868.1
Unique NamemRNA_Ecto-sp13_S_contig8479.19868.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8479.19868.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.070e-25
Identity = 123/163 (75.46%), Postives = 123/163 (75.46%), Query Frame = -2 
Query:    2 AGSGQAVSAQGLAASDAAPAPSESSPLLRLSTSGAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWPPGGTWCIPGEGAXXXXXXXXSGCNADAPEEPSALGAPSGIMSAPGNGLGQVSG 490
            A SGQAVSAQGLAASDAAPAPSESS LLRLS SGAAQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            WPP GTWCIPGEGA  XXX   SGCNAD PEEPSALGAPSGIMSAPGNGLG VSG
Sbjct: 1590 ASSGQAVSAQGLAASDAAPAPSESSQLLRLSPSGAAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADAVAESDEAGGLLSVPEHDAAAADAWPPCGTWCIPGEGAGTXXXPGGSGCNADKPEEPSALGAPSGIMSAPGNGLGPVSG 1752
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8479.19868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE1.070e-2575.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8479contigEcto-sp13_S_contig8479:4276..4766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.4559183-UTR-Ecto-sp13_S_contig8479:4275..43131681464117.4559183-UTR-Ecto-sp13_S_contig8479:4275..4313Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8479 4276..4313 +
1681464117.4755611-UTR-Ecto-sp13_S_contig8479:4739..47661681464117.4755611-UTR-Ecto-sp13_S_contig8479:4739..4766Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8479 4740..4766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.4661884-CDS-Ecto-sp13_S_contig8479:4313..47391681464117.4661884-CDS-Ecto-sp13_S_contig8479:4313..4739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8479 4314..4739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8479.19868.1prot_Ecto-sp13_S_contig8479.19868.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8479 4314..4739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8479.19868.1

>prot_Ecto-sp13_S_contig8479.19868.1 ID=prot_Ecto-sp13_S_contig8479.19868.1|Name=mRNA_Ecto-sp13_S_contig8479.19868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MIPLGAPSADGSSGASALHPDPPGPDPVPAPSPGMHHVPPGGQAAAAAAS
CSGTPRRPPASALSAAASAAVPPAVVAPLFSSSPSCSFSGPPPRSLPPVL
PDAVVCRASVAAASCAAPEVDNRSNGDDSDGAGAASEAANP*
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mRNA from alignment at Ecto-sp13_S_contig8479:4276..4766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8479.19868.1 ID=mRNA_Ecto-sp13_S_contig8479.19868.1|Name=mRNA_Ecto-sp13_S_contig8479.19868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8479:4276..4766+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGACACTTGTCCCAAACCATTACCGGGCGCCGACATGATCCCACTC
GGCGCGCCCAGCGCCGATGGTTCCTCCGGTGCATCGGCATTGCATCCGGA
CCCGCCGGGGCCGGACCCTGTACCAGCGCCTTCACCCGGGATGCACCACG
TGCCGCCAGGAGGCCAGGCGGCGGCTGCGGCGGCGTCTTGTTCTGGTACG
CCGAGAAGGCCACCTGCTTCGGCGCTTTCGGCGGCGGCATCGGCGGCGGT
GCCGCCAGCGGTAGTCGCGCCGCTCTTCTCTTCCTCGCCGTCTTGTTCCT
TCTCCGGGCCTCCGCCCCGCTCCTTGCCGCCGGTGCTGCCAGATGCAGTC
GTTTGTCGTGCTAGCGTTGCCGCCGCCTCCTGCGCCGCCCCCGAGGTCGA
CAACCGGAGCAACGGCGACGACTCAGACGGGGCGGGAGCGGCGTCCGAAG
CCGCTAACCCTTGAGCCGAAACCGCTTGTCCAGAACCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8479:4276..4766+

>mRNA_Ecto-sp13_S_contig8479.19868.1 ID=mRNA_Ecto-sp13_S_contig8479.19868.1|Name=mRNA_Ecto-sp13_S_contig8479.19868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8479:4276..4766+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCCACTCGGCGCGCCCAGCGCCGATGGTTCCTCCGGTGCATCGGC
ATTGCATCCGGACCCGCCGGGGCCGGACCCTGTACCAGCGCCTTCACCCG
GGATGCACCACGTGCCGCCAGGAGGCCAGGCGGCGGCTGCGGCGGCGTCT
TGTTCTGGTACGCCGAGAAGGCCACCTGCTTCGGCGCTTTCGGCGGCGGC
ATCGGCGGCGGTGCCGCCAGCGGTAGTCGCGCCGCTCTTCTCTTCCTCGC
CGTCTTGTTCCTTCTCCGGGCCTCCGCCCCGCTCCTTGCCGCCGGTGCTG
CCAGATGCAGTCGTTTGTCGTGCTAGCGTTGCCGCCGCCTCCTGCGCCGC
CCCCGAGGTCGACAACCGGAGCAACGGCGACGACTCAGACGGGGCGGGAG
CGGCGTCCGAAGCCGCTAACCCTTGA
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