mRNA_Ecto-sp13_S_contig8436.19817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8436.19817.1
Unique NamemRNA_Ecto-sp13_S_contig8436.19817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 735 bits (1897), Expect = 4.330e-260
Identity = 374/414 (90.34%), Postives = 386/414 (93.24%), Query Frame = 1
Query:    1 MSYSLDAADGALRARIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPSATGAAMSASEGACEEKEVRVRVEVVPTSTMERDVFVGLGGDVGAMSSDDLHRRWSCGVQTASATAGAASSSELRSSWRESHDRSHSTMPMHSEGELFSTSCQVLHGADSLSCSGHADVGSHFTGASPCRSPDSHCAEGGRMDPMCLERHSSPRIPSSNFGDDASASALPARGGNTAPFETSNVGGSDAACLRKRWHEAMEFGDVGDMPVSGLAGRLTLATDLRTCSEGVTPFETSDVGGSDAACLGKRWHEAMEIGHVGDMPVSELSGRLTLATDL 1242
            MS SLDAADGALR  IAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRP+ATGAAMSASEGACEEKEVRVRV VVPTST +R+V  GLGGDVGAMSSDDL RRWSCGVQTAS+TAGAASSSELRSSWRESHDRS S MP+HSEG+LF TSCQVLHGADSLSCSGHAD+GSHFTGASP RSPDS CA GGR++ MCLERHSS RIP SNFG DASASALPARG NT PFETS+VGG DAACLRKR HEAMEFGDVGDMPVS LAGRLTLATDLRTCSE VTPFETSDVGGSDAACLGKRWHEAMEIG VGD  V+EL+GRLTLA DL
Sbjct:    1 MSCSLDAADGALRTGIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPTATGAAMSASEGACEEKEVRVRVGVVPTSTTQREVLFGLGGDVGAMSSDDLRRRWSCGVQTASSTAGAASSSELRSSWRESHDRSRSPMPIHSEGDLFGTSCQVLHGADSLSCSGHADIGSHFTGASPRRSPDSQCAGGGRVNSMCLERHSSLRIPPSNFGIDASASALPARGENTTPFETSDVGGLDAACLRKRRHEAMEFGDVGDMPVSELAGRLTLATDLRTCSEDVTPFETSDVGGSDAACLGKRWHEAMEIGDVGDQRVNELTGRLTLAADL 414          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 721 bits (1860), Expect = 2.850e-255
Identity = 367/414 (88.65%), Postives = 380/414 (91.79%), Query Frame = 1
Query:    1 MSYSLDAADGALRARIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPSATGAAMSASEGACEEKEVRVRVEVVPTSTMERDVFVGLGGDVGAMSSDDLHRRWSCGVQTASATAGAASSSELRSSWRESHDRSHSTMPMHSEGELFSTSCQVLHGADSLSCSGHADVGSHFTGASPCRSPDSHCAEGGRMDPMCLERHSSPRIPSSNFGDDASASALPARGGNTAPFETSNVGGSDAACLRKRWHEAMEFGDVGDMPVSGLAGRLTLATDLRTCSEGVTPFETSDVGGSDAACLGKRWHEAMEIGHVGDMPVSELSGRLTLATDL 1242
            MS SLDAADG LRA IAPADVFILSRLNDTTSYFF WFCKKYRIQIGPPRGLGGKEE TRCPICLDSCTKSIELQCGHSFCRSCLI+SAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAI PPP+RSRPSAT AAMSASEGA EEK+VRVRV+VVPTST  R+VFVGLGGDVGAMSSDDL RRWSCGV TASATAGAASSSELRSSWRESHDRS S MPMHSEGEL  TSCQVLHGADS+SCSGHAD+GSHFTGASP RSPDS CA  GR+D MCLERHSSPRIPSSNFGDDASASALPARGGNT PFETS+VGG DAACLRKRWHEAMEFGDVGDMPVS LA  LTLATDLRTCSE +TPFET DVGGSDAA LGKRWHEA+E G VGDMPVSEL+GRL+   DL
Sbjct:    1 MSCSLDAADGTLRAGIAPADVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEENTRCPICLDSCTKSIELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAILPPPLRSRPSATSAAMSASEGAYEEKDVRVRVKVVPTSTTGREVFVGLGGDVGAMSSDDLRRRWSCGVHTASATAGAASSSELRSSWRESHDRSRSLMPMHSEGELCGTSCQVLHGADSVSCSGHADIGSHFTGASPRRSPDSQCAGRGRVDSMCLERHSSPRIPSSNFGDDASASALPARGGNTTPFETSDVGGLDAACLRKRWHEAMEFGDVGDMPVSELAESLTLATDLRTCSEDMTPFETRDVGGSDAAFLGKRWHEAIETGDVGDMPVSELAGRLSREADL 414          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.580e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   58 DVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRL 378
            D FI++RLND TSYF TWFCK +R+++            + CPICLD+ T SI+LQCGH+FCRSCL  SAA N T+CALCRREQ + P++LR +FD++RM NLA+RL
Sbjct:  212 DNFIVARLNDETSYFMTWFCKHFRLRLNTA--------PSSCPICLDTVTNSIQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 310          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.670e-23
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   58 DVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRL 378
            DVF LSRLND T+YFF W CK+Y        GL  K E   CPICL++   SI+L CGH+FCR CL  +A   M+SCALCR+   +DP+ LR +F  QR  N++ RL
Sbjct:   69 DVFYLSRLNDPTTYFFQWICKRY--------GLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRL 167          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 111 bits (278), Expect = 6.530e-23
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   58 DVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQR 375
            DVF++SR+ND +SYF+TWFCK++  ++        K  K  CPICL+S   SIELQCGHSFCR CL  SA   ++ C LCR    ++PE LR  F++QR+ NL +R
Sbjct:   40 DVFLVSRMNDESSYFYTWFCKRFEFKLK-----ANKTYKENCPICLESELHSIELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRR 140          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: A0A7R9UUM7_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UUM7_DIALT)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:  166 EEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSA--ANNMTSCALCRREQEIDP 321
            E+   CPICL S  + + L+CGH+FCR CL+QS   A +  +C LCRR    DP
Sbjct:   22 EKACECPICLHSLCEPLSLECGHAFCRLCLLQSTRLAPDGRACPLCRRLVGADP 75          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: A0A8D3AMW2_SCOMX (Uncharacterized protein n=3 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3AMW2_SCOMX)

HSP 1 Score: 57.4 bits (137), Expect = 3.070e-5
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:  166 EEKTRCPICLDSCTKSIELQCGHSFCRSCLIQS-AANNMTSCALCRR 303
            E+  RCPICLD  T  + LQCGH+FC+ C++++   N +  CALC+R
Sbjct:   14 EQHFRCPICLDVLTAPVTLQCGHNFCKKCIVENWRINRIRQCALCKR 60          
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Match: UPI0018F55B42 (zinc-binding protein A33-like n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F55B42)

HSP 1 Score: 55.8 bits (133), Expect = 8.650e-5
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query:  169 EKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRRE 306
            E+T CPICLD   + + L CGHSFCRSC+ Q     + SC  CR E
Sbjct:   12 EETICPICLDFFIEPVSLDCGHSFCRSCISQCWEREINSCPECREE 57          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8436.19817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G6B8_ECTSI4.330e-26090.34RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF26_9PHAE2.850e-25588.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CQW4_9STRA2.580e-2957.94RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CMH2_9STRA1.670e-2351.40RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S3XVA3_HETAK6.530e-2350.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7R9UUM7_DIALT1.630e-548.15Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A8D3AMW2_SCOMX3.070e-548.94Uncharacterized protein n=3 Tax=Scophthalmus maxim... [more]
UPI0018F55B428.650e-552.17zinc-binding protein A33-like n=1 Tax=Scyliorhinus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8436contigEcto-sp13_S_contig8436:10..1251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1242
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001270.1
Cds size1242
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.4961588-CDS-Ecto-sp13_S_contig8436:9..12511681464113.4961588-CDS-Ecto-sp13_S_contig8436:9..1251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8436 10..1251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8436.19817.1prot_Ecto-sp13_S_contig8436.19817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8436 10..1251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8436.19817.1

>prot_Ecto-sp13_S_contig8436.19817.1 ID=prot_Ecto-sp13_S_contig8436.19817.1|Name=mRNA_Ecto-sp13_S_contig8436.19817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp
MSYSLDAADGALRARIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPR
GLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCR
REQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPSATGAAMSASEGA
CEEKEVRVRVEVVPTSTMERDVFVGLGGDVGAMSSDDLHRRWSCGVQTAS
ATAGAASSSELRSSWRESHDRSHSTMPMHSEGELFSTSCQVLHGADSLSC
SGHADVGSHFTGASPCRSPDSHCAEGGRMDPMCLERHSSPRIPSSNFGDD
ASASALPARGGNTAPFETSNVGGSDAACLRKRWHEAMEFGDVGDMPVSGL
AGRLTLATDLRTCSEGVTPFETSDVGGSDAACLGKRWHEAMEIGHVGDMP
VSELSGRLTLATDL
back to top

mRNA from alignment at Ecto-sp13_S_contig8436:10..1251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8436.19817.1 ID=mRNA_Ecto-sp13_S_contig8436.19817.1|Name=mRNA_Ecto-sp13_S_contig8436.19817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8436:10..1251- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTACTCTTTGGATGCTGCAGACGGTGCTCTTCGGGCCAGAATCGC CCCTGCCGACGTATTTATACTTTCTCGGCTGAACGACACGACATCCTACT TCTTCACGTGGTTCTGCAAGAAGTACCGAATCCAAATTGGCCCCCCACGT GGACTCGGAGGCAAGGAAGAAAAGACCAGATGCCCTATCTGTTTAGACTC GTGCACGAAGTCCATTGAACTCCAGTGTGGACATTCATTCTGCCGCTCGT GCCTCATACAGTCGGCCGCGAACAACATGACCTCATGCGCCCTCTGCCGA CGGGAGCAGGAGATCGACCCAGAGCAACTCCGCGCCCGTTTCGATGAGCA ACGAATGCTGAACCTAGCTCAGCGCCTGGCGATCCCGCCGCCGCCGGTGC GCTCGCGCCCTAGCGCAACAGGTGCCGCCATGTCCGCCAGCGAAGGAGCA TGCGAAGAAAAGGAGGTGCGCGTCAGAGTGGAGGTTGTCCCAACCTCAAC GATGGAGCGTGACGTGTTTGTTGGTCTGGGAGGAGACGTAGGAGCGATGT CATCCGACGATCTTCACCGTCGATGGAGCTGCGGGGTGCAAACGGCAAGT GCAACCGCTGGAGCAGCATCCTCCTCCGAGCTTCGTTCCTCGTGGCGGGA ATCGCACGACAGGTCACACTCTACCATGCCCATGCACAGTGAGGGCGAGC TTTTCAGCACGTCCTGTCAGGTGTTGCACGGAGCTGATAGCCTCAGCTGC TCCGGCCACGCCGACGTTGGCAGTCATTTTACAGGTGCCAGCCCGTGCAG GAGCCCTGACTCGCATTGCGCAGAAGGTGGCCGGATGGACCCAATGTGTC TTGAACGGCACAGCTCGCCCAGGATTCCGTCTAGCAATTTTGGAGATGAT GCATCCGCATCTGCTTTACCAGCTCGTGGGGGAAATACGGCACCGTTTGA AACGAGCAATGTCGGCGGCTCGGACGCCGCCTGTCTGCGGAAACGCTGGC ACGAGGCGATGGAGTTCGGCGATGTGGGAGACATGCCGGTGAGCGGACTC GCTGGAAGGCTGACCCTGGCAACCGATTTGCGGACGTGCAGCGAGGGTGT GACGCCATTTGAAACAAGCGATGTCGGTGGCTCAGATGCAGCCTGCCTCG GGAAGCGCTGGCACGAGGCGATGGAGATCGGCCACGTGGGAGACATGCCG GTGAGCGAGCTCTCTGGAAGGCTGACTCTGGCAACCGATTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8436:10..1251-

>mRNA_Ecto-sp13_S_contig8436.19817.1 ID=mRNA_Ecto-sp13_S_contig8436.19817.1|Name=mRNA_Ecto-sp13_S_contig8436.19817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8436:10..1251- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTACTCTTTGGATGCTGCAGACGGTGCTCTTCGGGCCAGAATCGC
CCCTGCCGACGTATTTATACTTTCTCGGCTGAACGACACGACATCCTACT
TCTTCACGTGGTTCTGCAAGAAGTACCGAATCCAAATTGGCCCCCCACGT
GGACTCGGAGGCAAGGAAGAAAAGACCAGATGCCCTATCTGTTTAGACTC
GTGCACGAAGTCCATTGAACTCCAGTGTGGACATTCATTCTGCCGCTCGT
GCCTCATACAGTCGGCCGCGAACAACATGACCTCATGCGCCCTCTGCCGA
CGGGAGCAGGAGATCGACCCAGAGCAACTCCGCGCCCGTTTCGATGAGCA
ACGAATGCTGAACCTAGCTCAGCGCCTGGCGATCCCGCCGCCGCCGGTGC
GCTCGCGCCCTAGCGCAACAGGTGCCGCCATGTCCGCCAGCGAAGGAGCA
TGCGAAGAAAAGGAGGTGCGCGTCAGAGTGGAGGTTGTCCCAACCTCAAC
GATGGAGCGTGACGTGTTTGTTGGTCTGGGAGGAGACGTAGGAGCGATGT
CATCCGACGATCTTCACCGTCGATGGAGCTGCGGGGTGCAAACGGCAAGT
GCAACCGCTGGAGCAGCATCCTCCTCCGAGCTTCGTTCCTCGTGGCGGGA
ATCGCACGACAGGTCACACTCTACCATGCCCATGCACAGTGAGGGCGAGC
TTTTCAGCACGTCCTGTCAGGTGTTGCACGGAGCTGATAGCCTCAGCTGC
TCCGGCCACGCCGACGTTGGCAGTCATTTTACAGGTGCCAGCCCGTGCAG
GAGCCCTGACTCGCATTGCGCAGAAGGTGGCCGGATGGACCCAATGTGTC
TTGAACGGCACAGCTCGCCCAGGATTCCGTCTAGCAATTTTGGAGATGAT
GCATCCGCATCTGCTTTACCAGCTCGTGGGGGAAATACGGCACCGTTTGA
AACGAGCAATGTCGGCGGCTCGGACGCCGCCTGTCTGCGGAAACGCTGGC
ACGAGGCGATGGAGTTCGGCGATGTGGGAGACATGCCGGTGAGCGGACTC
GCTGGAAGGCTGACCCTGGCAACCGATTTGCGGACGTGCAGCGAGGGTGT
GACGCCATTTGAAACAAGCGATGTCGGTGGCTCAGATGCAGCCTGCCTCG
GGAAGCGCTGGCACGAGGCGATGGAGATCGGCCACGTGGGAGACATGCCG
GTGAGCGAGCTCTCTGGAAGGCTGACTCTGGCAACCGATTTG
back to top