mRNA_Ecto-sp13_S_contig8432.19812.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8432.19812.1
Unique NamemRNA_Ecto-sp13_S_contig8432.19812.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8432.19812.1 vs. uniprot
Match: D8LCQ8_ECTSI (Gamma carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ8_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 1.870e-94
Identity = 179/209 (85.65%), Postives = 180/209 (86.12%), Query Frame = 1 
Query:    1 VAGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQASAGRPCTPAVYVRDISELEAASIVTTAAETQARRARIQGTAEACFFFYCRQRSALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGDENLAYNDVEGQGVPGRVFNTNLRSPDVEYEPPTYEGDMAAGNDAEEGGKMPHAAAEAKA 627
            V GPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ  AG   TPAVYVRDISELEAASIVTTAAETQ                      ALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGD+NLAYNDVEGQGVPGRVFNTNLRSPDVEYEPPTYEGDMAAGNDAEEGGKMPH AAEAKA
Sbjct:  121 VIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQLWAG---TPAVYVRDISELEAASIVTTAAETQ----------------------ALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGDDNLAYNDVEGQGVPGRVFNTNLRSPDVEYEPPTYEGDMAAGNDAEEGGKMPHVAAEAKA 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8432.19812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCQ8_ECTSI1.870e-9485.65Gamma carbonic anhydrase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8432contigEcto-sp13_S_contig8432:74..3213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score290.4
Seed ortholog evalue6.6e-76
Seed eggNOG ortholog2880.D8LCQ8
Model size630
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009853,GO:0009900,GO:0009901,GO:0009908,GO:0009987,GO:0010033,GO:0016020,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0019222,GO:0019866,GO:0022414,GO:0022607,GO:0030964,GO:0031090,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0042221,GO:0042802,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0061458,GO:0065003,GO:0065007,GO:0070206,GO:0070207,GO:0070469,GO:0071840,GO:0090567,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099402,GO:1902494,GO:1990204,GO:2000377
Exons4
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGs2QTES@2759,COG0663@1
Cds size630
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.2854311-CDS-Ecto-sp13_S_contig8432:73..2511681464113.2854311-CDS-Ecto-sp13_S_contig8432:73..251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8432 74..251 +
1681464113.2975826-CDS-Ecto-sp13_S_contig8432:1051..11941681464113.2975826-CDS-Ecto-sp13_S_contig8432:1051..1194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8432 1052..1194 +
1681464113.3068402-CDS-Ecto-sp13_S_contig8432:1740..18381681464113.3068402-CDS-Ecto-sp13_S_contig8432:1740..1838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8432 1741..1838 +
1681464113.3163545-CDS-Ecto-sp13_S_contig8432:3002..32131681464113.3163545-CDS-Ecto-sp13_S_contig8432:3002..3213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8432 3003..3213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8432.19812.1prot_Ecto-sp13_S_contig8432.19812.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8432 74..3213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8432.19812.1

>prot_Ecto-sp13_S_contig8432.19812.1 ID=prot_Ecto-sp13_S_contig8432.19812.1|Name=mRNA_Ecto-sp13_S_contig8432.19812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
VAGPRATIHACTLKDDCMVGAGATVMDGATVSSGAMVAPGATVSPNITVP
TGQASAGRPCTPAVYVRDISELEAASIVTTAAETQARRARIQGTAEACFF
FYCRQRSALSLAHASECEKGPLEIELDERKWDEKASRDPTYVFQVPEEGD
ENLAYNDVEGQGVPGRVFNTNLRSPDVEYEPPTYEGDMAAGNDAEEGGKM
PHAAAEAKA*
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mRNA from alignment at Ecto-sp13_S_contig8432:74..3213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8432.19812.1 ID=mRNA_Ecto-sp13_S_contig8432.19812.1|Name=mRNA_Ecto-sp13_S_contig8432.19812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8432:74..3213+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCAGGCCCCAGAGCTACCATCCACGCGTGCACGCTCAAGGACGACTG
CATGGTGGGCGCGGGCGCGACGGTTATGGACGGGGCGACGGTGTCGAGCG
GAGCAATGGTGGCGCCGGGGGCTACCGTCTCCCCTAACATCACGGTGCCG
ACCGGACAGGCGAGTGCTGGCCGGCCGTGTTGATATGTTGCTCGCCGTTG
TTTTCTCTGGTTCGTAGGGTTGTCGGGAGAGAGGGTTGGCGAGGGGGCGA
TCGGCGACCTAGCCACACGTGTAACGATCACGAGGCGTCCTCCTTTTGTT
GTTCGAAGAGGCGGAGGGACAACGATTCGGCGGGAAGGAACGAGGCCTCC
CTTGTCTGTGCTCTTCGCTCACTATTGGTGTACCCCTACGGTGCAGTCGT
CGACTCGCCTGGGGGCTCATCACCGAGGCACCCTGACCTGTATGGGTCTC
CAGGATATGCACACGAAGTTGCGCGCTTCTTGCTACACGGTATCCGTAGA
GCCGGTGAACCCAAACGTACGTGAACACGTATATGCTGCACGGGATTCAT
ACGCGGCCCCCGCTGTGCCGTTATGTAATGTTGTATACCGATTGATATCG
ACCGGCCTGCAGAGGCATATATGCCGGTCCGGGCCTCCTGCCGAGCCTTT
GCCCCCATGCCCTCCCCCCACCCCCCCCCCCCCCCCCCCCCCCTCCCCCC
CCTTCCGGCCCCCTTCCTTCCCCCCGCCCNNNNNNNNNNTTATCGCCCCG
CCCGCAGAGGGATATATTCCGGTCCCGGCCCCCTCCCCAGCCTTTTCCCC
CCTTCCCCCCCCCCCCCCCCCCCCAATACTTCCCGTACTCCCCGCTTGGC
CGTCTCCGTGCCTGCACCGTCTCCACCCACACCCCTCTCTCTTGTCGTTC
CCCCCCTCATCTGTTTTTTGCGCTTTTTTCTCTTGGCGATTTTTTATTTT
TTGCGGCGGTTTCTGCAGCTGTGGGCAGGCACTCCCGCGGTGTACGTTAG
GGATATCTCCGAGCTGGAGGCCGCTTCGATAGTCACCACGGCAGCGGAAA
CTCAGGCAAGACGAGCAAGAATCCAGGGCACCGCCGAGGCGTGCTTCTTT
TTTTATTGCCGACAACGATCGGTCGAGAAAGTTGTCCCACTCGGTGTGTT
TGCAATCCCGTCGTCGCTTGAAGACAGGAGGCGCGTTCCCCGTGTTCAGG
GAAACGGTTTGTCTGGATGGGGCGTAGGCAATACACGTCGCCTACAGCAG
TGTAACCACACCGTGTTGTAACGTCGTGGAAAGGAAAAAGCAGGGGAGCG
CGTGTTTGTGCGGTACGTCGAAGGCCAGCGACTTTGGCGCCGTTGTCTTC
TTTTTAGCGGAAGGACCTGGAAATTGGTGGCTTGGTCATGGCGCTATCTG
TTGAGGCCATTTTTGCCGATCGTGCCCCTTTTTTTTGTATTTTTCACCAC
TCTACATCATGTGTTCTGTGCGCCGTGTGTTCCTTTCCTGCCTGGCCGCG
ACCCGGCCGCCCTCCAAACGTTCGTGGATGGCTTCGTTTTTGTTGTGGAC
CGTGTGCCTGATTCTCACCACTGTTTTTCCTCGCTCTCTCTGCTGTTTTG
TCCGGTGCGCCTGCTGCGCTCTCTTGCGTATCGCTGGACTTTCCTTGTGT
CCGCCGGTAACCGCCAGGCGCTGTCTCTAGCGCACGCGTCGGAGTGCGAG
AAGGGGCCGCTGGAGATCGAGCTGGACGAGCGGAAGTGGGATGAAAAGGC
CAGCCGCGACCCAACGTAAGCATTTGTTTTGATTCTGTTTCACTAAGTAT
TTTGGGCCGCCCGGCGGAGACTACAGAGGTCCCTGGAACTTGGATAATAT
CGCACCGTAACCCTGTCCCAGTCGTCGCGTACCGCTGTATCGACTAACCC
GTCAGTGCGTGTCTTGCTCAATGTATAGGCCTTGTTGTCGCCAGTGGTGG
TAGCGTGGCTTCGTATGGTGTGTTTCGTCATAGTTACTATCGCGACAGTC
CCCCCATTTTCGTGGTGATAACGTGAACTTCAATTTTAAGTTTATGTACA
AGTAGAGCACTACACTTTTCAGTGTACTTTTTCGTCGACTACAACCATCC
AGGGTCCCACAGCAGGGGGTAAAACACCAGGACTTTTTTGTTCGTTTGTT
TACGTTCGTACCCCACCTTCCTCTTGCGGTGCGTGCTGATTATTGTTTTG
ATATCGCGAGAAGGGTCCAGCCGTCCCTTTCTCTCGTCAACGGTGCTGTC
GTCCAAGTTTGGTACTCAAAAGCTTTATCAGCTATTTTTCACTTTCACCC
GCAAATTTTGTAACATGTCCACCCCATGTGCATTCGAACTCACGGCCTTT
GCGACTAGCGGTGTTGAAGGATACCACGAGACCACCGGGGCGTAGAGATG
CTATTTAGCGTTTCCCCTATTTTCCACAGCGTCTGGTGCAGACTTTTGGC
CTGCGTTCGCTTGTTCGTGGCTCGGCGGCCTTGGTGGTGTGTCCAGTGTG
GTGGTGACGACAAGGTGGCAGTGACAGCTAGGGTTAGGGCTTGAAGACGA
TGATAGTTTTGATGTGCACATCCTCCTTCATTCCTCCGTCCTGGAGTGGT
TGGTGAGTGTGTTTCAGGCGCAGCATGACCACACATTTATGATGATTACC
ATGTTTGATGCCTACCCAAGGATTCACAGACATGCACCGTCAAGTCCAGG
GGCGACATCCTGCACGATCAGCGCCCTGGAAATTTCCACTAACCCCCGCC
CCCGCCGTTCCCACCCCGGTGCCCCCATCCCCGCTCTCTCTCTTTCTCGC
TCTTTCTCTTCCTCTCGTCCTCTCTCTCTGTCTCCCTCTCTCTCTTTCTC
TCTCTCTCCCTCTCTCTGTCTCTGTCTCTGTCTGTCTCTCTATCTCTCTC
CCCCCATCTCTCTCCTTTCTCTGACGCAGTTACGTGTTCCAGGTGCCGGA
GGAGGGGGACGAGAACCTCGCCTACAACGACGTGGAAGGGCAGGGCGTCC
CGGGGCGCGTCTTCAACACCAACCTGCGCTCGCCGGACGTGGAGTACGAG
CCGCCCACGTACGAGGGAGACATGGCCGCGGGTAACGACGCCGAGGAGGG
CGGGAAGATGCCTCACGCCGCCGCCGAAGCAAAAGCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8432:74..3213+

>mRNA_Ecto-sp13_S_contig8432.19812.1 ID=mRNA_Ecto-sp13_S_contig8432.19812.1|Name=mRNA_Ecto-sp13_S_contig8432.19812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8432:74..3213+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCAGGCCCCAGAGCTACCATCCACGCGTGCACGCTCAAGGACGACTG
CATGGTGGGCGCGGGCGCGACGGTTATGGACGGGGCGACGGTGTCGAGCG
GAGCAATGGTGGCGCCGGGGGCTACCGTCTCCCCTAACATCACGGTGCCG
ACCGGACAGGCGAGTGCTGGCCGGCCGTGCACTCCCGCGGTGTACGTTAG
GGATATCTCCGAGCTGGAGGCCGCTTCGATAGTCACCACGGCAGCGGAAA
CTCAGGCAAGACGAGCAAGAATCCAGGGCACCGCCGAGGCGTGCTTCTTT
TTTTATTGCCGACAACGATCGGCGCTGTCTCTAGCGCACGCGTCGGAGTG
CGAGAAGGGGCCGCTGGAGATCGAGCTGGACGAGCGGAAGTGGGATGAAA
AGGCCAGCCGCGACCCAACTTACGTGTTCCAGGTGCCGGAGGAGGGGGAC
GAGAACCTCGCCTACAACGACGTGGAAGGGCAGGGCGTCCCGGGGCGCGT
CTTCAACACCAACCTGCGCTCGCCGGACGTGGAGTACGAGCCGCCCACGT
ACGAGGGAGACATGGCCGCGGGTAACGACGCCGAGGAGGGCGGGAAGATG
CCTCACGCCGCCGCCGAAGCAAAAGCTTAA
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