mRNA_Ecto-sp13_S_contig84201.19797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84201.19797.1
Unique NamemRNA_Ecto-sp13_S_contig84201.19797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Match: A0A6H5KGN2_9PHAE (P4Hc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.860e-42
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRCVRPLACNSNIRIYRY 222
            CA+WIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR  RPLACNSNIRIYRY
Sbjct:   32 CAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR--RPLACNSNIRIYRY 103
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BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Match: D7FQ80_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ80_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.150e-41
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRCVRPLACNSNIRIYRY 222
            CA+WIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR  RPLACNSNIRIYRY
Sbjct:   68 CAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR--RPLACNSNIRIYRY 139
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BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Match: A0A836CHZ3_9STRA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.970e-20
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRCVRPLACNSNIRIYRY 222
            C +WI +GE  GFE +FH  T E+AHRDNGR+ +HS D+AAA++ R+  FVPA +  R  +   CN+NIR+YRY
Sbjct:   18 CGAWIDWGEETGFENTFHTATREIAHRDNGRLQVHSPDIAAAIWQRIQPFVPAELS-RGRKAAGCNANIRLYRY 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84201.19797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGN2_9PHAE1.860e-4295.95P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FQ80_ECTSI3.150e-4195.95P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CHZ3_9STRA7.970e-2052.70Fe2OG dioxygenase domain-containing protein (Fragm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84201contigEcto-sp13_S_contig84201:3..588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score147.1
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog2880.D7FQ80
Model size222
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Prolyl 4-hydroxylase alpha subunit homologues.
EggNOG OGs28IQ0@1,2QR14@2759
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.9739304-CDS-Ecto-sp13_S_contig84201:2..1811681464111.9739304-CDS-Ecto-sp13_S_contig84201:2..181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84201 3..181 +
1681464111.9887042-CDS-Ecto-sp13_S_contig84201:545..5881681464111.9887042-CDS-Ecto-sp13_S_contig84201:545..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84201 546..588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84201.19797.1prot_Ecto-sp13_S_contig84201.19797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84201 3..588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84201.19797.1

>prot_Ecto-sp13_S_contig84201.19797.1 ID=prot_Ecto-sp13_S_contig84201.19797.1|Name=mRNA_Ecto-sp13_S_contig84201.19797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
CASWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKF
VPANMGGRCVRPLACNSNIRIYRY
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mRNA from alignment at Ecto-sp13_S_contig84201:3..588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84201.19797.1 ID=mRNA_Ecto-sp13_S_contig84201.19797.1|Name=mRNA_Ecto-sp13_S_contig84201.19797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84201:3..588+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCCTCCTGGATACGGTACGGCGAAGGCCAGGGGTTCGAGCGGAGCTT
CCATAGACAGACGTCCGAGATGGCCCACCGCGACAACGGGAGGATAACCC
TCCACAGCGCCGACGTGGCGGCCGCCGTGTTCGCAAGGGTGGGGAAGTTT
GTGCCGGCCAACATGGGCGGAAGGTGCGTGTTGTTGTCCTTCCTCTCTCT
GTTTTCGTCCCCTCTTGCTGCGAATGAGTCGCCGATCGGGAAGGCACTCA
GCAAACGAAGTACTCTAGGTTTGTTCGCGTCCGACCATGTATACTGTCGG
TCGTGGTCGTGGTCTCTCCCGCCGCTTGAATCACCCCCTTACGAAGAAAG
CACCACCATCCGTGGAAGAATGCGAAAAGCTTTCGGCTTATGTTCAACAT
CGCCTCGTTGGCCTGCGAACGAATCGTGGTAGGCAGTGTTTCATCTTCTC
TTGTGTTTTATTTGTCCATGTGTTTAGAGCTCTCTCGGTTCGGTCTCCGT
ACCCTCTTGCCGCCCACGCGCTACACTCCCCCCCCGAATACAGGCGACCG
TTAGCGTGCAACTCGAACATCCGCATCTACCGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84201:3..588+

>mRNA_Ecto-sp13_S_contig84201.19797.1 ID=mRNA_Ecto-sp13_S_contig84201.19797.1|Name=mRNA_Ecto-sp13_S_contig84201.19797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84201:3..588+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCCTCCTGGATACGGTACGGCGAAGGCCAGGGGTTCGAGCGGAGCTT
CCATAGACAGACGTCCGAGATGGCCCACCGCGACAACGGGAGGATAACCC
TCCACAGCGCCGACGTGGCGGCCGCCGTGTTCGCAAGGGTGGGGAAGTTT
GTGCCGGCCAACATGGGCGGAAGGTGCGTGCGACCGTTAGCGTGCAACTC
GAACATCCGCATCTACCGGTAC
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