mRNA_Ecto-sp13_S_contig84144.19789.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84144.19789.1
Unique NamemRNA_Ecto-sp13_S_contig84144.19789.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84144.19789.1 vs. uniprot
Match: A0A6H5K6C5_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.780e-8
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:    1 IGPFTAEEVARHSSEDDAWIIVDGKV 78
            IGPFTAEEVARHSSEDDAWIIVDGKV
Sbjct:  394 IGPFTAEEVARHSSEDDAWIIVDGKV 419
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BLAST of mRNA_Ecto-sp13_S_contig84144.19789.1 vs. uniprot
Match: D8LGB0_ECTSI (NAD dependent epimerase/dehydratase, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB0_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.180e-7
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 IGPFTAEEVARHSSEDDAWIIVDGK 75
            IGPFTAEEVARHSSE+DAWIIVDGK
Sbjct:  396 IGPFTAEEVARHSSEEDAWIIVDGK 420
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BLAST of mRNA_Ecto-sp13_S_contig84144.19789.1 vs. uniprot
Match: A0A6V1SKW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SKW1_HETAK)

HSP 1 Score: 48.9 bits (115), Expect = 4.100e-6
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    4 GPFTAEEVARHSSEDDAWIIVDGKV 78
            GPFT EEVA+H+S DDAWII+DGKV
Sbjct:   42 GPFTKEEVAKHNSPDDAWIIIDGKV 66
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BLAST of mRNA_Ecto-sp13_S_contig84144.19789.1 vs. uniprot
Match: A0A836CIL1_9STRA (3-beta hydroxysteroid dehydrogenase/isomerase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.990e-6
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 IGPFTAEEVARHSSEDDAWIIVDGKVRRIVP 93
            +GPF+A EVARH + DDAWIIVDGKV  + P
Sbjct:  360 VGPFSAAEVARHRTADDAWIIVDGKVYAVTP 390
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84144.19789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6C5_9PHAE1.780e-8100.00Cytochrome b5 heme-binding domain-containing prote... [more]
D8LGB0_ECTSI2.180e-796.00NAD dependent epimerase/dehydratase, putative (Par... [more]
A0A6V1SKW1_HETAK4.100e-680.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CIL1_9STRA4.990e-667.743-beta hydroxysteroid dehydrogenase/isomerase fami... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84144contigEcto-sp13_S_contig84144:459..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.3138828-CDS-Ecto-sp13_S_contig84144:458..5811681464111.3138828-CDS-Ecto-sp13_S_contig84144:458..581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84144 459..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84144.19789.1prot_Ecto-sp13_S_contig84144.19789.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84144 459..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84144.19789.1

>prot_Ecto-sp13_S_contig84144.19789.1 ID=prot_Ecto-sp13_S_contig84144.19789.1|Name=mRNA_Ecto-sp13_S_contig84144.19789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
IGPFTAEEVARHSSEDDAWIIVDGKVRRIVPSWSALRDAV*
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mRNA from alignment at Ecto-sp13_S_contig84144:459..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84144.19789.1 ID=mRNA_Ecto-sp13_S_contig84144.19789.1|Name=mRNA_Ecto-sp13_S_contig84144.19789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84144:459..581- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGGCCTTTCACGGCTGAGGAGGTCGCTCGTCACTCCTCCGAAGACGA
CGCGTGGATCATTGTCGACGGAAAGGTGCGGCGGATAGTGCCTTCTTGGA
GCGCCCTGCGAGACGCTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84144:459..581-

>mRNA_Ecto-sp13_S_contig84144.19789.1 ID=mRNA_Ecto-sp13_S_contig84144.19789.1|Name=mRNA_Ecto-sp13_S_contig84144.19789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84144:459..581- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGGCCTTTCACGGCTGAGGAGGTCGCTCGTCACTCCTCCGAAGACGA
CGCGTGGATCATTGTCGACGGAAAGGTGCGGCGGATAGTGCCTTCTTGGA
GCGCCCTGCGAGACGCTGTTTGA
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