mRNA_Ecto-sp13_S_contig8413.19788.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8413.19788.1
Unique NamemRNA_Ecto-sp13_S_contig8413.19788.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8413.19788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8413contigEcto-sp13_S_contig8413:5243..6148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size906
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.2152362-UTR-Ecto-sp13_S_contig8413:5242..55671681464111.2152362-UTR-Ecto-sp13_S_contig8413:5242..5567Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8413 5243..5567 +
1681464111.2452164-UTR-Ecto-sp13_S_contig8413:6086..61481681464111.2452164-UTR-Ecto-sp13_S_contig8413:6086..6148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8413 6087..6148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.232761-CDS-Ecto-sp13_S_contig8413:5567..60861681464111.232761-CDS-Ecto-sp13_S_contig8413:5567..6086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8413 5568..6086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8413.19788.1prot_Ecto-sp13_S_contig8413.19788.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8413 5568..6086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8413.19788.1

>prot_Ecto-sp13_S_contig8413.19788.1 ID=prot_Ecto-sp13_S_contig8413.19788.1|Name=mRNA_Ecto-sp13_S_contig8413.19788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MSSLLPVLPAFKSGCPLHFRRSDGDDVMMSAGAGRSQRQRQQRHAYITAG
KTLRCSCFSLFRIRSLAVRGLIFALPPAGACFSNRQLAFRRKGPTSSPLA
HRTTSPTTTRPERKRHAHSELFQRIVPRKQLKPQTTEEENHTPWCMAKDP
PLSLLSRPRVPIVANSRRVPCA*
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mRNA from alignment at Ecto-sp13_S_contig8413:5243..6148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8413.19788.1 ID=mRNA_Ecto-sp13_S_contig8413.19788.1|Name=mRNA_Ecto-sp13_S_contig8413.19788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8413:5243..6148+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGCCACAGAAAAAATTGTTTGCTCCGTCGTGCTTTCGACGACTAGGTA
GGACGCCCGCCCTTGCCTGAAGTTGTCGTTCGAACTAGCCAGATTTCTCT
CCCACAACAGGTTTCGTAACTTCTGTCTCAACGTCACACTCATGCCCATT
CACAGCATCCTTGACCCTCCTCCGCTTACATGTCGCGAAAAAACTGCAAA
AACAAAGAAGTAGCTTCGTGCGATCGGTCCATGTCGGTCGCTAGCTCATC
GTCCCAGCTGCCGTCTGATGCATCTCAGGGTAGGTTTTTATGCCTTGAAA
CTTTCCAGCAAGTTTCGTGGATTCCATGTCATCCCTCCTCCCCGTCCTTC
CTGCGTTCAAGAGCGGTTGCCCTCTGCATTTCCGACGCTCTGACGGTGAT
GATGTCATGATGAGTGCTGGAGCAGGCCGCAGTCAGCGGCAGCGGCAGCA
GCGGCACGCCTATATTACTGCGGGAAAAACGCTTCGATGTTCTTGCTTCT
CCCTTTTTCGCATCCGTTCTCTTGCGGTGCGGGGACTTATTTTCGCTCTC
CCTCCTGCCGGAGCTTGCTTTTCGAATCGACAACTCGCGTTTCGCCGGAA
AGGCCCCACTTCCTCGCCCTTAGCACACCGGACAACATCACCAACGACAA
CAAGGCCGGAGCGGAAACGTCACGCACACAGCGAGCTATTCCAACGCATA
GTACCACGCAAGCAGCTAAAACCTCAAACGACTGAAGAGGAAAACCACAC
ACCATGGTGCATGGCGAAGGACCCCCCCCTCTCCCTCCTCTCGCGCCCCA
GGGTCCCTATAGTTGCGAACTCCCGTCGTGTGCCGTGTGCATGACAGGAA
GCACTCCCGTTCTCTCGACAGCTCTTGGAAAAGGGGTCTGATGGACATCA
CCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8413:5243..6148+

>mRNA_Ecto-sp13_S_contig8413.19788.1 ID=mRNA_Ecto-sp13_S_contig8413.19788.1|Name=mRNA_Ecto-sp13_S_contig8413.19788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8413:5243..6148+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCCCTCCTCCCCGTCCTTCCTGCGTTCAAGAGCGGTTGCCCTCT
GCATTTCCGACGCTCTGACGGTGATGATGTCATGATGAGTGCTGGAGCAG
GCCGCAGTCAGCGGCAGCGGCAGCAGCGGCACGCCTATATTACTGCGGGA
AAAACGCTTCGATGTTCTTGCTTCTCCCTTTTTCGCATCCGTTCTCTTGC
GGTGCGGGGACTTATTTTCGCTCTCCCTCCTGCCGGAGCTTGCTTTTCGA
ATCGACAACTCGCGTTTCGCCGGAAAGGCCCCACTTCCTCGCCCTTAGCA
CACCGGACAACATCACCAACGACAACAAGGCCGGAGCGGAAACGTCACGC
ACACAGCGAGCTATTCCAACGCATAGTACCACGCAAGCAGCTAAAACCTC
AAACGACTGAAGAGGAAAACCACACACCATGGTGCATGGCGAAGGACCCC
CCCCTCTCCCTCCTCTCGCGCCCCAGGGTCCCTATAGTTGCGAACTCCCG
TCGTGTGCCGTGTGCATGA
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