mRNA_Ecto-sp13_S_contig8400.19777.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8400.19777.1
Unique Name	mRNA_Ecto-sp13_S_contig8400.19777.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8400.19777.1 vs. uniprot
Match: D7FYZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ9_ECTSI)

HSP 1 Score: 1892 bits (4901), Expect = 0.000e+0
Identity = 1161/1358 (85.49%), Postives = 1182/1358 (87.04%), Query Frame = 2

Query:    2 SGTVRNMLLARVGSGMTSNQRRSGASLAEARGGAPHLPEPPTAVIQALNKQVAPERFTEGDARAVRTLAPAIAAGSRLIVSLLNFSGRGGGANPAREHASP-FCCPPATEPSSRGCPEELLLLRDGLRRAREGLGADRARLFVLDADLAPGVTTGAGGRLRLQLWHEDPAPPWSVGTSGALGRSGGGGGRGVRLDAGLHGVALSTGRAARSADALSDPLHDREPDVREGFLARSVLCAPLLERQPXXXXXXXXXXXXETDRGST-TRRGGIASGVPFAVLELTLGRRSVPVDDDGRASEASIARGSGLGESGG-RTRKAFTEGDEALAEAFAHDLAGLLSGLLAAGFRPRASATTLAGGGGHLGTAHGVGRSRGSARDGRASWQQRRAIPSVDGACDDDDRGRLLTRADLGRPTQQQNGHGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRASVATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHGLVVSDEQRRGTASAGVANVEPGGRQQQVEAIEARSWATAQRVLEHCKESLAADKRPRQHHFPDGSANPAVATASSTSSSHATSITPAVRSLVSTLLPGCTAVLLLLDRATGRLRDVGFETDHPDEGGADLATPQQPPPVQREDVARRALASGKALLSRMADPGEAAATPEGGGGSSDLSRRRIFCVPVCGTAERPYGVLQLFLPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAKVVTDSVGLALGWCEALDRQEKASQEQAXXXXXXXXXXXXXXERSREELEARHKEELRLARQSHAARAAETADAHARAVASLLEDREELAAAXXXXXXLARARKDGARALVAWREASRRGRKAEAIAARLLERRRGKALREWRSRTLALRARDGAEAAGIGASARRGLRRAIGTWTRNVARRRVAEERRLAGARLVAEVLRRSGGAVRRCFGVWRVAARDASAAQEALAQKEEDEKRTAFVDEASFHCGGELSRAEARAQLLSERVADMCRRRRNDRVVRSACRAWLDLAQQMGQMRENVRLAELWRRRQGLKSALTRWREVIVPQPRTIPPALTAEEGPPTTGTGPPAVDLAESETWMERVGPWGLIGENPAAAAVAGEARGGRSVPPPAGIGGGQAPTRSGKRVLVSGGRE-VVEAAVAHSPIRANALACGTGGGSSVRSSSRADRAAASPRAAENTAFRDNNATWDGSLERLRLETLTVAAAGGFRQQRNRTSALRLLSAWRRAAATERSKREALSRLVRGARRRRLRGGLGRWRAGTRAVRAKEERRAAREGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLATEREKELRLEKAAGEGL 4063
            SGTVRNMLLARVGSGMTSNQRRSGASLAEA GG PHLPEPPTAVIQALNKQVAPERFTEGDARAVRTLAPAIAAGSRLIVSLLN SGR GGANPAREHASP F CPPATEPSSRGCPEELLLLRDGLRRAREGLGADRARLFVLD DLAPGV  G GGRLRLQLWHEDPA PWSVG SGALG+SGGGG  GVRLDAGLHGVA+STGRAARSADALSDPL+DREPDVREGFLARSVLCAPLLERQPXXXXXXXXXXXXETDRGST +  GGIASGVPFAVLELTLGRRSVPVDDDGRA+EASIARGSGLGESGG RTRKAF EGDEALAEAFA DLAGLLSGLLAAGFRPR SATTLAGGGGHLGTA GV  SRGSARDGRASWQQRRAIPSVD ACDD DRGRLLTRADL RPTQQ N HGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRASVATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHG VVS+EQRRG AS         GRQQQVEAIEARSWATAQRVLEHCKESLAADKRPRQHH PDGSAN AVA ASSTS+SHA SI PAVRSLVSTLLPGCTAVLLLLDRATGRLRD GFETDHPDEGGAD ATPQQPP VQREDVARRALASGKALLSRMADPGEAAA PEGGGGSSDLSRRRIFCVPV                                                                 VTDSVGLALGWCEALDRQEKASQEQA XXXXXXXXXXXXX    EELEARHKEELRLARQSH ARAAETADAHARAVASLLED+EELAA XXXXXX  RARKDGARALVAWREASRRGRKAEAIAARLLERRRGKALREWRSRTLALRARDGAEAAG+ ASARRGLRRA+GTWT+NVARRRVAEERRLAGARLVAEVLRRSGG V+ CF VWRVAARDASAAQ+ALAQ E DEKR A VDE       ELSRAEARAQLLSERVADMCRRRRNDRVVRSACRAWL LAQQMGQ RENVRLAELWRRRQ LKSALTRWR VIVPQ ++IPPALTAEEGPP TGTGPPAV L ESET +ERVGPWG IGE P AAAVAGEA GGR VPPPAG  GGQA TR G+R+LVSGGRE VV+AAVAHSPIR +ALA GTGGGSSVRSSS ADRAAASPRAAE TAFRDNNAT DG LERLRLETLT AAAGGFRQQR+RTSALRLLSAWRRAAATERSKREALSRLVRGARRRRLRGGL RWR G RAVRAKEERRAAREGAAAXXXXXXXXXXXXXXXXXXXXXX        KLATEREKELRLEKAAGE L
Sbjct:   72 SGTVRNMLLARVGSGMTSNQRRSGASLAEAGGGHPHLPEPPTAVIQALNKQVAPERFTEGDARAVRTLAPAIAAGSRLIVSLLNLSGRAGGANPAREHASPKFDCPPATEPSSRGCPEELLLLRDGLRRAREGLGADRARLFVLDTDLAPGVAVGGGGRLRLQLWHEDPARPWSVGMSGALGQSGGGGWGGVRLDAGLHGVAVSTGRAARSADALSDPLYDREPDVREGFLARSVLCAPLLERQPXXXXXXXXXXXXETDRGSTASSSGGIASGVPFAVLELTLGRRSVPVDDDGRATEASIARGSGLGESGGGRTRKAFAEGDEALAEAFARDLAGLLSGLLAAGFRPRESATTLAGGGGHLGTARGV--SRGSARDGRASWQQRRAIPSVDDACDDHDRGRLLTRADLRRPTQQDNDHGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRASVATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHGRVVSEEQRRGAASL--------GRQQQVEAIEARSWATAQRVLEHCKESLAADKRPRQHHHPDGSANLAVAAASSTSNSHAASIAPAVRSLVSTLLPGCTAVLLLLDRATGRLRDAGFETDHPDEGGADRATPQQPP-VQREDVARRALASGKALLSRMADPGEAAAAPEGGGGSSDLSRRRIFCVPV-----------------------------------------------------------------VTDSVGLALGWCEALDRQEKASQEQAAXXXXXXXXXXXXXXXXXEELEARHKEELRLARQSHGARAAETADAHARAVASLLEDKEELAAXXXXXXXXXRARKDGARALVAWREASRRGRKAEAIAARLLERRRGKALREWRSRTLALRARDGAEAAGVEASARRGLRRAVGTWTKNVARRRVAEERRLAGARLVAEVLRRSGGPVKICFCVWRVAARDASAAQKALAQNEADEKRRAVVDE-------ELSRAEARAQLLSERVADMCRRRRNDRVVRSACRAWLGLAQQMGQRRENVRLAELWRRRQALKSALTRWRGVIVPQAQSIPPALTAEEGPPATGTGPPAVGLTESETRVERVGPWGSIGETPVAAAVAGEAGGGRGVPPPAGSRGGQASTRGGERLLVSGGREGVVQAAVAHSPIRTDALASGTGGGSSVRSSSVADRAAASPRAAEITAFRDNNATGDGGLERLRLETLTEAAAGGFRQQRDRTSALRLLSAWRRAAATERSKREALSRLVRGARRRRLRGGLSRWRVGARAVRAKEERRAAREGAAAXXXXXXXXXXXXXXXXXXXXXXARGRAAAEKLATEREKELRLEKAAGEEL 1346

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BLAST of mRNA_Ecto-sp13_S_contig8400.19777.1 vs. uniprot
Match: A0A6H5K3T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T9_9PHAE)

HSP 1 Score: 1804 bits (4672), Expect = 0.000e+0
Identity = 1156/1349 (85.69%), Postives = 1184/1349 (87.77%), Query Frame = 2

Query:  134 IQALNKQVAPERFTEGDARAVRTLAPAIAAGSRLIVSLLNFSGRGGGANPAREHASPFCCPP----ATEPSSRGCPEELLLLRDGLRRAREGLGADRARLFVLDADLAPGVTTGAGGRLRLQLWHEDPAPPWSVGTSGALGRSGGGGGR-GVRLDAGLHGVALSTGRAARSADALSDPLHDREPDVREGFLARSVLCAPLLERQPXXXXXXXXXXXXETDRGSTTRRGGIASGVPFAVLELTLGRRSVPVDDDGRASEASIARGSGLGESGG-RTRKAFTEGDEALAEAFAHDLAGLLSGLLAAGFRPRASATTLAGGGGHLGTAHGVGRSRGSARDGRASWQQRRAIPSVDGACDDDDRGRLLTRADLGRPTQQQNGHGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRASVATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHGLVVSDEQRRGTASAGVANVEPGGRQQQVEAIEARSWATAQRVLEHCKESLAADKRPRQHHFPDGSANPAVATASSTSSSHATSITPAVRSLVSTLLPGCTAVLLLLDRATGRLRDVGFETDHPDEGGADLATPQQPPPVQREDVARRALASGKALLSRMADPGEAAATPEGGGGSSDLSRRRIFCVPVCGTAERPYGVLQLFLPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAKVVTDSVGLALGWCEALDRQEKASQEQAXXXXXXXXXXXXXX----ERSREELEARHKEELRLARQSHAARAAETADAHARAVASLLEDREELAAAXXXXXXLARARKDGARALVAWREASRRGRKAEAIAARLLERRRGKALREWRSRTLALRARDGAEAAGIGASARRGLRRAIGTWTRNVARRRVAEERRLAGARLVAEVLRRSGGAVRRCFGVWRVAARDASAAQEALAQKEEDEKRTAFVDEASFHCGG-----------ELSRAEARAQLLSERVADMCRRRRNDRVVRSACRAWLDLAQQMGQMRENVRLAELWRRRQGLKSALTRW-------REVIVPQPRTIPPALTAEEGPPTTGTGPPAVDLAESETWMERVGPWGLIGENPAAAAVAGEARGGRSVPPPAGIGGGQAPTRSGKRVLVSGGRE-VVEAAVAHSPIRANALACGTGGGSSVRSSSRADRAAASPRAAENTAFRDNNATWDGSLERLRLETLTVAAAGGFRQQRNRTSALRLLSAWRRAAATERSKREALSRLVRGARRRRLRGGLGRWRAGTRAVRAKEERRAAREGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLATEREKELRLEKAAGEGLREAVERLQKE 4093
            + ALNKQVAPERFTEGDARAVRTLAPAIAAG               G                   ATEPSSRGCPEELLLLRDGLRRAREGLGADRARL VLDADLAPGV TG GGRLRLQLWHEDPAPPWSVGTSGALGRSG      GVRLDAGLHGVALSTGRA RSADALSDPL+DREPDVREGFLARSVLCAPLLERQPXXXXXXXXXXXX TDR ST  RGGIASGVP AVLELTLGRRSVPVDDDGRA+EASIARGSGLGESGG RTRKAF EGDEALAEAFA DLAGLLSGLLAAGFRPRA+ATTLAGGGGHLGTA G GRSRGSARDGRASWQQRRAIPSVDGAC+DD RGRLLTRADLGRPTQQQNGHGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRASVATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHG VV+DEQRRGTA  GVANVEPGGRQQQVEAIEARSWATAQRVLEHCKESLAADK+PRQHH PDGSANPAVATASSTSSSHA SITPAVRSLVSTLLPGCTAVLLLLDRATGRLRD GFETDHPD GGADLATPQQPPPVQRED+ARRAL SGKALLSRMADPGEAAA PEG   SSDLSRRRIFCVPVCG+AER YGVLQLFLP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAKVVTDSVGLALGWCEALDRQEKASQEQ XXXXXXXXXXXXXX    ERSREELEARH EELRLARQSH               ASLLE RE+LAAA      LARA+KDGARALVAWREASRRGRKAEAIAARLLERRRGKALR+WRSRTLALRAR  AEAAGI ASARRGLR+A+GTWTRNVARRRVA+ERRLAGARLV +VLRRSGGAVRRCFGVWRVAA+DAS AQEALAQKEEDEKR AFV EAS HCGG           ELSRAEARAQLLSERVADMC RRRNDRVVRSACRAWL +AQQMGQ RENVRLAELWRRRQGLKSALTRW       REVIVP+ +T PPALTAEEGPP TGTGPPAVDLAESET ME VGPWG IGENPAAAAVAGEA GGR    P+GIGGGQAPTR GKRVLVS GRE VV+AAVAHSPIRA+ALA GTGGGSSV SSS ADRAAASPRAA NTAFRDNNAT DG L RLRLETLT AAAG FRQQR+RT ALRLLSAWRR+AATERSKREALSRLVRGARRRRLRGGLGRWRAGT+AVRAKEERRAAREGA+ XXXXXXXXXXXXXXXXXXXX          KLATEREKELR+EKAAGE LREAVERLQ E
Sbjct:  208 VPALNKQVAPERFTEGDARAVRTLAPAIAAGXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXXATEPSSRGCPEELLLLRDGLRRAREGLGADRARLLVLDADLAPGVKTGGGGRLRLQLWHEDPAPPWSVGTSGALGRSGXXXXXXGVRLDAGLHGVALSTGRAVRSADALSDPLYDREPDVREGFLARSVLCAPLLERQPXXXXXXXXXXXXXTDRRSTASRGGIASGVPLAVLELTLGRRSVPVDDDGRATEASIARGSGLGESGGGRTRKAFAEGDEALAEAFARDLAGLLSGLLAAGFRPRAAATTLAGGGGHLGTAGGAGRSRGSARDGRASWQQRRAIPSVDGACEDD-RGRLLTRADLGRPTQQQNGHGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRASVATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHGRVVTDEQRRGTAGVGVANVEPGGRQQQVEAIEARSWATAQRVLEHCKESLAADKQPRQHHPPDGSANPAVATASSTSSSHAASITPAVRSLVSTLLPGCTAVLLLLDRATGRLRDAGFETDHPDAGGADLATPQQPPPVQREDMARRALTSGKALLSRMADPGEAAAAPEGXXXSSDLSRRRIFCVPVCGSAERTYGVLQLFLP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAKVVTDSVGLALGWCEALDRQEKASQEQXXXXXXXXXXXXXXXXXTRERSREELEARHNEELRLARQSHXXXXXXXXXXXXXXXASLLEGREDLAAAAARALALARAKKDGARALVAWREASRRGRKAEAIAARLLERRRGKALRQWRSRTLALRARVRAEAAGIEASARRGLRQAVGTWTRNVARRRVAKERRLAGARLVGDVLRRSGGAVRRCFGVWRVAAKDASVAQEALAQKEEDEKRRAFVHEASIHCGGVDRVYSAAGLLELSRAEARAQLLSERVADMCGRRRNDRVVRSACRAWLGIAQQMGQRRENVRLAELWRRRQGLKSALTRWGLENRRWREVIVPRAQTTPPALTAEEGPPATGTGPPAVDLAESETRMEGVGPWGSIGENPAAAAVAGEA-GGRGATLPSGIGGGQAPTRGGKRVLVSEGREGVVKAAVAHSPIRADALASGTGGGSSVPSSSIADRAAASPRAAGNTAFRDNNATGDGDLGRLRLETLTEAAAGWFRQQRDRTFALRLLSAWRRSAATERSKREALSRLVRGARRRRLRGGLGRWRAGTQAVRAKEERRAAREGASXXXXXXXXXXXXXXXXXXXXXRGRAAAE---KLATEREKELRVEKAAGEELREAVERLQTE 1550

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8400.19777.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8400.19777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FYZ9_ECTSI	0.000e+0	85.49	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K3T9_9PHAE	0.000e+0	85.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8400	contig	Ecto-sp13_S_contig8400:2..5413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	4093
Hectar predicted targeting category	other localisation
Exons	5
Ec32 ortholog description	NBS type disease resistance protein
Ec32 ortholog	Ec-06_002190.1
Cds size	4074

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8400.19777.1	prot_Ecto-sp13_S_contig8400.19777.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8400 21..5413 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464110.5221322-UTR-Ecto-sp13_S_contig8400:1..20	1681464110.5221322-UTR-Ecto-sp13_S_contig8400:1..20	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig8400 2..20 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464110.5329347-CDS-Ecto-sp13_S_contig8400:20..34	1681464110.5329347-CDS-Ecto-sp13_S_contig8400:20..34	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8400 21..34 +
1681464110.5425034-CDS-Ecto-sp13_S_contig8400:367..473	1681464110.5425034-CDS-Ecto-sp13_S_contig8400:367..473	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8400 368..473 +
1681464110.5588808-CDS-Ecto-sp13_S_contig8400:677..3527	1681464110.5588808-CDS-Ecto-sp13_S_contig8400:677..3527	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8400 678..3527 +
1681464110.5715904-CDS-Ecto-sp13_S_contig8400:3982..4185	1681464110.5715904-CDS-Ecto-sp13_S_contig8400:3982..4185	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8400 3983..4185 +
1681464110.5828097-CDS-Ecto-sp13_S_contig8400:4512..5413	1681464110.5828097-CDS-Ecto-sp13_S_contig8400:4512..5413	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8400 4513..5413 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8400:2..5413+
coding sequence from alignment at Ecto-sp13_S_contig8400:2..5413+

protein sequence of mRNA_Ecto-sp13_S_contig8400.19777.1

>prot_Ecto-sp13_S_contig8400.19777.1 ID=prot_Ecto-sp13_S_contig8400.19777.1|Name=mRNA_Ecto-sp13_S_contig8400.19777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1358bp
MLLARVGSGMTSNQRRSGASLAEARGGAPHLPEPPTAVIQALNKQVAPER
FTEGDARAVRTLAPAIAAGSRLIVSLLNFSGRGGGANPAREHASPFCCPP
ATEPSSRGCPEELLLLRDGLRRAREGLGADRARLFVLDADLAPGVTTGAG
GRLRLQLWHEDPAPPWSVGTSGALGRSGGGGGRGVRLDAGLHGVALSTGR
AARSADALSDPLHDREPDVREGFLARSVLCAPLLERQPPPSGGDTAAAAQ
ETDRGSTTRRGGIASGVPFAVLELTLGRRSVPVDDDGRASEASIARGSGL
GESGGRTRKAFTEGDEALAEAFAHDLAGLLSGLLAAGFRPRASATTLAGG
GGHLGTAHGVGRSRGSARDGRASWQQRRAIPSVDGACDDDDRGRLLTRAD
LGRPTQQQNGHGQTGLEGVEARGRVRGQMGSSSTSTAVGVSPLGAGVRAS
VATTGQKSPDGDEGPLPPSPATEGSSGYGGGSPTTSPHGLVVSDEQRRGT
ASAGVANVEPGGRQQQVEAIEARSWATAQRVLEHCKESLAADKRPRQHHF
PDGSANPAVATASSTSSSHATSITPAVRSLVSTLLPGCTAVLLLLDRATG
RLRDVGFETDHPDEGGADLATPQQPPPVQREDVARRALASGKALLSRMAD
PGEAAATPEGGGGSSDLSRRRIFCVPVCGTAERPYGVLQLFLPPAPPPAA
AGGNGAAAALVSPPSSSRGKAAVPPPPPLPPPPPSFFMAAKVVTDSVGLA
LGWCEALDRQEKASQEQAAAAARTAAAAAAARERSREELEARHKEELRLA
RQSHAARAAETADAHARAVASLLEDREELAAAAARALALARARKDGARAL
VAWREASRRGRKAEAIAARLLERRRGKALREWRSRTLALRARDGAEAAGI
GASARRGLRRAIGTWTRNVARRRVAEERRLAGARLVAEVLRRSGGAVRRC
FGVWRVAARDASAAQEALAQKEEDEKRTAFVDEASFHCGGELSRAEARAQ
LLSERVADMCRRRRNDRVVRSACRAWLDLAQQMGQMRENVRLAELWRRRQ
GLKSALTRWREVIVPQPRTIPPALTAEEGPPTTGTGPPAVDLAESETWME
RVGPWGLIGENPAAAAVAGEARGGRSVPPPAGIGGGQAPTRSGKRVLVSG
GREVVEAAVAHSPIRANALACGTGGGSSVRSSSRADRAAASPRAAENTAF
RDNNATWDGSLERLRLETLTVAAAGGFRQQRNRTSALRLLSAWRRAAATE
RSKREALSRLVRGARRRRLRGGLGRWRAGTRAVRAKEERRAAREGAAASA
AKAKEAVAEAAVAAEAAAAAAKGRAAAEKLATEREKELRLEKAAGEGLRE
AVERLQKE

mRNA from alignment at Ecto-sp13_S_contig8400:2..5413+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8400.19777.1 ID=mRNA_Ecto-sp13_S_contig8400.19777.1|Name=mRNA_Ecto-sp13_S_contig8400.19777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5412bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8400:2..5413+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGGTACCGTCAGGAACATGCTCCTTGCGAGGTGAGCGACGTAGATGT
TTTGTCAGGTGACTCCGCTTTTCTGCGCGCAAACGATTGGTTTTGAGCAG
TCGGTGGTCGTCGAAGATCAACGGCTAGAGGTACGACGACCTTCGCTAAT
CCCCCTACTGACCGCCATTGTTGTTAAGTCGGCACGGTAGCTGGGGCATA
ATTGCCGGTTCACGAAGACAAGAAGACAAGGCCCACCAGGACGCGTTCTT
TGTATGCAAATGAAAACCACCCTCACCCCCTTTTGTTCAAACGATGCACG
TTTCGCCCCAATGAAGCGGAAAATCTGATGGTTCCTGTCGCTATTTTTGC
TGCCGTAATTTGGCAGGGTCGGTTCCGGTATGACCTCTAACCAGAGGCGC
TCCGGAGCGTCTCTCGCTGAAGCTCGGGGGGGGGCTCCTCATTTGCCGGA
GCCCCCGACGGCCGTGATCCAGGTGTGTGCAAGCAAACTCTTTGCGTCCT
TCACCCGAGTTGTTTGTAATTCGAGACAAATCTTTTGTCGATGTACGTCT
GGACCCTTTGCATCCGTCGCGATGCACTTCTTGGAAACCCCGCGAGGACC
TTTCTTACCAAGGCAGCCCTCATGGAATAAAGCTTTGCCGCGTTTGTGTG
TGTTTCTCCCGGTCGTGGCGGGACAGGCTCTCAACAAGCAGGTGGCCCCG
GAGCGTTTCACGGAGGGGGATGCCCGCGCCGTGCGCACCCTCGCCCCGGC
GATAGCCGCGGGTTCCCGTCTCATCGTCTCGCTCCTCAACTTTTCTGGCC
GCGGGGGCGGCGCTAACCCCGCGAGGGAACATGCCTCGCCGTTTTGCTGC
CCTCCAGCGACGGAACCGAGTTCCCGCGGCTGCCCGGAAGAGCTGCTGCT
TCTCCGGGACGGGCTGAGACGCGCCCGAGAAGGCCTCGGTGCCGACCGCG
CCCGGCTGTTCGTGCTTGACGCCGACCTCGCTCCCGGAGTCACCACCGGT
GCTGGTGGACGTTTGCGGCTTCAGCTGTGGCACGAAGACCCCGCCCCGCC
TTGGTCAGTCGGCACGTCAGGGGCCCTTGGCCGGAGCGGCGGCGGCGGCG
GGAGAGGGGTCAGGTTGGACGCGGGGCTTCACGGGGTCGCGCTATCGACG
GGACGGGCCGCCAGGTCCGCCGATGCCCTCTCCGACCCCCTTCATGACCG
GGAGCCGGACGTCAGGGAAGGGTTTCTGGCGCGGTCGGTGCTCTGCGCCC
CGCTGCTGGAGCGACAGCCGCCGCCGAGCGGTGGTGACACCGCTGCCGCC
GCCCAAGAAACGGATCGCGGGAGCACGACTAGGAGGGGGGGCATCGCGAG
CGGGGTGCCGTTCGCAGTCCTAGAGCTAACGCTGGGTCGGAGGTCCGTTC
CGGTCGACGATGACGGCCGCGCCAGTGAAGCTAGCATCGCACGGGGGAGC
GGGTTGGGCGAAAGCGGCGGAAGGACGAGGAAGGCGTTCACCGAGGGGGA
CGAGGCTCTGGCGGAAGCTTTCGCGCACGACTTGGCGGGGCTTCTGTCCG
GTCTGCTCGCCGCAGGGTTTCGGCCCAGAGCGTCGGCGACTACCCTGGCC
GGCGGCGGAGGGCACTTGGGTACGGCGCATGGTGTCGGCCGAAGCCGCGG
GTCAGCGCGTGATGGGCGTGCTTCTTGGCAACAAAGACGAGCAATACCGT
CCGTAGACGGCGCGTGCGACGATGATGATAGAGGCAGGTTGTTGACAAGA
GCTGACTTGGGACGACCAACACAGCAGCAAAACGGCCACGGACAGACGGG
GTTGGAAGGCGTTGAGGCTCGAGGCCGTGTAAGGGGGCAGATGGGCAGTA
GCTCCACGTCGACTGCCGTTGGGGTGAGCCCTCTCGGAGCCGGGGTCCGT
GCTTCAGTCGCGACTACGGGGCAGAAGTCGCCTGACGGTGATGAAGGGCC
GCTGCCGCCCTCCCCCGCCACCGAGGGCAGCAGCGGGTACGGGGGCGGCA
GTCCAACAACAAGCCCGCACGGACTGGTCGTCTCAGATGAGCAGCGCCGA
GGAACGGCCAGCGCCGGCGTCGCGAACGTTGAGCCTGGGGGGCGACAGCA
GCAGGTGGAAGCCATCGAGGCGCGGAGCTGGGCTACCGCCCAAAGGGTCC
TCGAGCACTGCAAGGAGAGCCTTGCCGCTGACAAGCGGCCACGGCAGCAC
CACTTCCCCGATGGATCCGCCAACCCCGCTGTTGCCACCGCCAGCAGCAC
TAGCAGCAGCCACGCAACGAGCATCACGCCGGCCGTGCGTTCGCTCGTGT
CTACGCTCTTGCCCGGCTGCACCGCGGTGCTGCTTCTGCTCGACCGCGCC
ACTGGACGGCTACGGGACGTCGGATTTGAGACGGATCATCCCGACGAAGG
TGGAGCGGATCTCGCGACGCCGCAGCAGCCGCCGCCGGTTCAGCGCGAAG
ACGTGGCTCGCCGCGCCCTGGCATCGGGTAAGGCGCTGCTCTCGAGGATG
GCGGATCCTGGCGAGGCAGCCGCCACCCCGGAGGGAGGAGGCGGCAGCAG
CGACCTCAGCCGCAGGAGGATATTCTGCGTCCCGGTGTGCGGAACCGCCG
AACGCCCGTATGGGGTCTTGCAGCTTTTCTTGCCGCCGGCGCCTCCTCCT
GCTGCTGCAGGGGGCAATGGTGCCGCTGCGGCCCTTGTCTCTCCTCCGTC
ATCGTCCCGAGGGAAAGCCGCCGTGCCTCCACCGCCGCCCCTTCCGCCTC
CGCCTCCGTCCTTCTTCATGGCCGCCAAGGTGGTGACCGATTCCGTGGGC
CTCGCCCTAGGCTGGTGCGAAGCTCTCGACCGCCAGGAGAAGGCCTCTCA
GGAACAGGCGGCGGCGGCCGCGAGGACGGCTGCGGCCGCGGCTGCGGCCC
GAGAGCGGAGTCGCGAGGAGCTCGAGGCCAGGCACAAGGAGGAGCTCCGG
CTCGCGCGGCAGTCTCACGCCGCCCGCGCCGCCGAGACCGCGGACGCTCA
CGCCCGCGCGGTCGCGAGCCTGCTCGAGGACAGGGAGGAGCTGGCCGCGG
CGGCGGCGAGGGCGCTGGCGCTGGCGAGGGCTAGGAAGGACGGGGCCAGG
GCCCTAGTCGCCTGGCGGGAAGCCTCGAGGAGGGGCCGGAAGGCCGAGGC
GATCGCCGCCCGGCTGCTGGAGCGGCGGCGCGGGAAGGCGCTGCGCGAGT
GGAGGTCGAGGACCCTGGCTCTCCGGGCCCGCGATGGGGCGGAGGCCGCG
GGGATAGGGGCATCGGCCAGGAGGGGGCTGCGGCGAGCGATCGGGACGTG
GACCAGGAACGTTGCTCGCCGGCGCGTCGCTGAGGAGCGGCGGCTAGCGG
GAGCCCGGCTCGTCGCGGAGGTGTTGAGGAGGAGCGGCGGGGCGGTGAGG
CGGTGCTTCGGCGTCTGGAGGGTGGCCGCTAGAGACGCGTCGGCCGCGCA
GGAGGCTCTAGCGCAGAAGGAGGAAGATGAGAAACGCACGGCGTTTGTGG
ATGAGGCGAGTTTTCATTGTGGGGGCGTCGAGGGAGTCTCCTCCGCGGCC
GGACTTGTGATGTTTTTTTTTTTGCTCGCCACCCGGGATGCACCCGCCGC
GTTGCGGGTTTCTTCTTTTGTGGCTTGGGTGCATGAGATAGTTGTGCTGC
GCGCTCTCTCTCTATGTTTCTTGGGGTAGGGTGGGGGGTTATGTCGTCCT
CAACTGGTCCACCCGCCACCGCGATGGATAGCCTTGCCTGTGGAGTGCGT
GAGGTAGGTTTCACGAGAACGAAGCCGCAACTCCTTCCACCTTTCGTGAG
TCATCCCCCCTCTCTCCCCTACACTACAAGTGTTGATTTGCACCCGTGAG
GTGGGGAAGTGTGGTACTCTGTCCGTAAATTGTTTTTTAGTATTGTCTTA
CACTAACGCACGTAACTACGCAAGAGTTTTGCGTGTTTTGCGAAGCTGAT
CTCATGTGCGAAACACGGACTCCTCTGTCAGGAATTGTCGCGTGCGGAGG
CCCGGGCGCAGCTCCTGTCGGAGCGTGTTGCGGACATGTGTCGTCGCCGG
CGGAACGATCGGGTAGTTCGCTCGGCGTGCCGAGCATGGCTCGACCTAGC
CCAGCAGATGGGGCAGATGCGCGAGAATGTGCGGCTAGCGGAGTTGTGGC
GGCGGCGGCAGGGCCTGAAGTCGGCGTTGACCAGGTGGGGGCTGGAAAAC
CGAAGGTTTACTTTTGTGTGATGGAGTTGTCGTTTCTGCCCCTTGTTGTG
CGTTTTGAGACAAGGCCGGCGTTGCTTCAGCAGCAAGCGCCCTTTGATAA
GACGGCAATGGTTGCTACGCATGAGGTCGGTATGTTGCGGTGATTGGCCG
TTTTCCAGGTCGCGCGTGCGCAATAAGATTACTCGGCTGTCCAAATCCCC
GGCCAAGTTTTTTTCTCGTTTCGGTGGCATCTATTTTAGTTCACGTCCTG
ACCCCCCCCCACTGCGACCCCTTGTACAACACGTGCGCCGCACTGTTCCA
CCTTGGATCAGGTGGCGGGAGGTCATTGTCCCTCAACCACGAACCATTCC
GCCAGCGCTTACCGCCGAAGAAGGTCCCCCGACCACCGGTACCGGTCCAC
CCGCAGTAGACCTGGCGGAATCTGAGACATGGATGGAACGCGTTGGTCCG
TGGGGTTTGATAGGCGAAAACCCCGCAGCCGCGGCTGTTGCGGGCGAGGC
AAGAGGAGGAAGAAGTGTGCCGCCGCCTGCGGGTATCGGAGGGGGTCAGG
CCCCGACGAGGAGTGGAAAGAGGGTACTCGTTAGCGGAGGCAGGGAAGTC
GTCGAGGCTGCCGTCGCCCACTCACCGATCCGCGCAAACGCTCTCGCATG
CGGCACCGGTGGCGGGAGTAGCGTACGGTCGTCGTCCAGAGCGGACAGAG
CGGCCGCGTCCCCGCGTGCTGCGGAGAACACCGCCTTTCGCGATAACAAC
GCCACCTGGGACGGCAGCCTCGAACGCTTGCGCCTGGAAACCCTCACGGT
GGCCGCCGCGGGCGGGTTCCGGCAGCAGCGAAACAGGACGTCCGCGCTGC
GGCTGCTGTCAGCGTGGCGACGCGCCGCCGCCACGGAGCGCTCGAAGAGG
GAGGCGTTGTCGCGCCTGGTGCGAGGAGCCCGGCGACGGCGACTGCGCGG
CGGGCTCGGCCGGTGGCGAGCGGGGACCCGGGCGGTCCGGGCCAAGGAGG
AGCGGCGAGCGGCGAGGGAAGGGGCGGCGGCGTCGGCGGCGAAGGCGAAG
GAGGCGGTGGCGGAGGCGGCGGTGGCGGCGGAGGCGGCGGCGGCGGCCGC
CAAGGGGAGGGCCGCGGCCGAGAAGCTAGCCACGGAGAGGGAGAAGGAGC
TGCGGCTAGAGAAGGCCGCGGGAGAGGGGCTGCGCGAGGCCGTGGAGAGG
CTGCAGAAAGAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8400:2..5413+

>mRNA_Ecto-sp13_S_contig8400.19777.1 ID=mRNA_Ecto-sp13_S_contig8400.19777.1|Name=mRNA_Ecto-sp13_S_contig8400.19777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8400:2..5413+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCTTGCGAGGGTCGGTTCCGGTATGACCTCTAACCAGAGGCGCTC
CGGAGCGTCTCTCGCTGAAGCTCGGGGGGGGGCTCCTCATTTGCCGGAGC
CCCCGACGGCCGTGATCCAGGCTCTCAACAAGCAGGTGGCCCCGGAGCGT
TTCACGGAGGGGGATGCCCGCGCCGTGCGCACCCTCGCCCCGGCGATAGC
CGCGGGTTCCCGTCTCATCGTCTCGCTCCTCAACTTTTCTGGCCGCGGGG
GCGGCGCTAACCCCGCGAGGGAACATGCCTCGCCGTTTTGCTGCCCTCCA
GCGACGGAACCGAGTTCCCGCGGCTGCCCGGAAGAGCTGCTGCTTCTCCG
GGACGGGCTGAGACGCGCCCGAGAAGGCCTCGGTGCCGACCGCGCCCGGC
TGTTCGTGCTTGACGCCGACCTCGCTCCCGGAGTCACCACCGGTGCTGGT
GGACGTTTGCGGCTTCAGCTGTGGCACGAAGACCCCGCCCCGCCTTGGTC
AGTCGGCACGTCAGGGGCCCTTGGCCGGAGCGGCGGCGGCGGCGGGAGAG
GGGTCAGGTTGGACGCGGGGCTTCACGGGGTCGCGCTATCGACGGGACGG
GCCGCCAGGTCCGCCGATGCCCTCTCCGACCCCCTTCATGACCGGGAGCC
GGACGTCAGGGAAGGGTTTCTGGCGCGGTCGGTGCTCTGCGCCCCGCTGC
TGGAGCGACAGCCGCCGCCGAGCGGTGGTGACACCGCTGCCGCCGCCCAA
GAAACGGATCGCGGGAGCACGACTAGGAGGGGGGGCATCGCGAGCGGGGT
GCCGTTCGCAGTCCTAGAGCTAACGCTGGGTCGGAGGTCCGTTCCGGTCG
ACGATGACGGCCGCGCCAGTGAAGCTAGCATCGCACGGGGGAGCGGGTTG
GGCGAAAGCGGCGGAAGGACGAGGAAGGCGTTCACCGAGGGGGACGAGGC
TCTGGCGGAAGCTTTCGCGCACGACTTGGCGGGGCTTCTGTCCGGTCTGC
TCGCCGCAGGGTTTCGGCCCAGAGCGTCGGCGACTACCCTGGCCGGCGGC
GGAGGGCACTTGGGTACGGCGCATGGTGTCGGCCGAAGCCGCGGGTCAGC
GCGTGATGGGCGTGCTTCTTGGCAACAAAGACGAGCAATACCGTCCGTAG
ACGGCGCGTGCGACGATGATGATAGAGGCAGGTTGTTGACAAGAGCTGAC
TTGGGACGACCAACACAGCAGCAAAACGGCCACGGACAGACGGGGTTGGA
AGGCGTTGAGGCTCGAGGCCGTGTAAGGGGGCAGATGGGCAGTAGCTCCA
CGTCGACTGCCGTTGGGGTGAGCCCTCTCGGAGCCGGGGTCCGTGCTTCA
GTCGCGACTACGGGGCAGAAGTCGCCTGACGGTGATGAAGGGCCGCTGCC
GCCCTCCCCCGCCACCGAGGGCAGCAGCGGGTACGGGGGCGGCAGTCCAA
CAACAAGCCCGCACGGACTGGTCGTCTCAGATGAGCAGCGCCGAGGAACG
GCCAGCGCCGGCGTCGCGAACGTTGAGCCTGGGGGGCGACAGCAGCAGGT
GGAAGCCATCGAGGCGCGGAGCTGGGCTACCGCCCAAAGGGTCCTCGAGC
ACTGCAAGGAGAGCCTTGCCGCTGACAAGCGGCCACGGCAGCACCACTTC
CCCGATGGATCCGCCAACCCCGCTGTTGCCACCGCCAGCAGCACTAGCAG
CAGCCACGCAACGAGCATCACGCCGGCCGTGCGTTCGCTCGTGTCTACGC
TCTTGCCCGGCTGCACCGCGGTGCTGCTTCTGCTCGACCGCGCCACTGGA
CGGCTACGGGACGTCGGATTTGAGACGGATCATCCCGACGAAGGTGGAGC
GGATCTCGCGACGCCGCAGCAGCCGCCGCCGGTTCAGCGCGAAGACGTGG
CTCGCCGCGCCCTGGCATCGGGTAAGGCGCTGCTCTCGAGGATGGCGGAT
CCTGGCGAGGCAGCCGCCACCCCGGAGGGAGGAGGCGGCAGCAGCGACCT
CAGCCGCAGGAGGATATTCTGCGTCCCGGTGTGCGGAACCGCCGAACGCC
CGTATGGGGTCTTGCAGCTTTTCTTGCCGCCGGCGCCTCCTCCTGCTGCT
GCAGGGGGCAATGGTGCCGCTGCGGCCCTTGTCTCTCCTCCGTCATCGTC
CCGAGGGAAAGCCGCCGTGCCTCCACCGCCGCCCCTTCCGCCTCCGCCTC
CGTCCTTCTTCATGGCCGCCAAGGTGGTGACCGATTCCGTGGGCCTCGCC
CTAGGCTGGTGCGAAGCTCTCGACCGCCAGGAGAAGGCCTCTCAGGAACA
GGCGGCGGCGGCCGCGAGGACGGCTGCGGCCGCGGCTGCGGCCCGAGAGC
GGAGTCGCGAGGAGCTCGAGGCCAGGCACAAGGAGGAGCTCCGGCTCGCG
CGGCAGTCTCACGCCGCCCGCGCCGCCGAGACCGCGGACGCTCACGCCCG
CGCGGTCGCGAGCCTGCTCGAGGACAGGGAGGAGCTGGCCGCGGCGGCGG
CGAGGGCGCTGGCGCTGGCGAGGGCTAGGAAGGACGGGGCCAGGGCCCTA
GTCGCCTGGCGGGAAGCCTCGAGGAGGGGCCGGAAGGCCGAGGCGATCGC
CGCCCGGCTGCTGGAGCGGCGGCGCGGGAAGGCGCTGCGCGAGTGGAGGT
CGAGGACCCTGGCTCTCCGGGCCCGCGATGGGGCGGAGGCCGCGGGGATA
GGGGCATCGGCCAGGAGGGGGCTGCGGCGAGCGATCGGGACGTGGACCAG
GAACGTTGCTCGCCGGCGCGTCGCTGAGGAGCGGCGGCTAGCGGGAGCCC
GGCTCGTCGCGGAGGTGTTGAGGAGGAGCGGCGGGGCGGTGAGGCGGTGC
TTCGGCGTCTGGAGGGTGGCCGCTAGAGACGCGTCGGCCGCGCAGGAGGC
TCTAGCGCAGAAGGAGGAAGATGAGAAACGCACGGCGTTTGTGGATGAGG
CGAGTTTTCATTGTGGGGGCGAATTGTCGCGTGCGGAGGCCCGGGCGCAG
CTCCTGTCGGAGCGTGTTGCGGACATGTGTCGTCGCCGGCGGAACGATCG
GGTAGTTCGCTCGGCGTGCCGAGCATGGCTCGACCTAGCCCAGCAGATGG
GGCAGATGCGCGAGAATGTGCGGCTAGCGGAGTTGTGGCGGCGGCGGCAG
GGCCTGAAGTCGGCGTTGACCAGGTGGCGGGAGGTCATTGTCCCTCAACC
ACGAACCATTCCGCCAGCGCTTACCGCCGAAGAAGGTCCCCCGACCACCG
GTACCGGTCCACCCGCAGTAGACCTGGCGGAATCTGAGACATGGATGGAA
CGCGTTGGTCCGTGGGGTTTGATAGGCGAAAACCCCGCAGCCGCGGCTGT
TGCGGGCGAGGCAAGAGGAGGAAGAAGTGTGCCGCCGCCTGCGGGTATCG
GAGGGGGTCAGGCCCCGACGAGGAGTGGAAAGAGGGTACTCGTTAGCGGA
GGCAGGGAAGTCGTCGAGGCTGCCGTCGCCCACTCACCGATCCGCGCAAA
CGCTCTCGCATGCGGCACCGGTGGCGGGAGTAGCGTACGGTCGTCGTCCA
GAGCGGACAGAGCGGCCGCGTCCCCGCGTGCTGCGGAGAACACCGCCTTT
CGCGATAACAACGCCACCTGGGACGGCAGCCTCGAACGCTTGCGCCTGGA
AACCCTCACGGTGGCCGCCGCGGGCGGGTTCCGGCAGCAGCGAAACAGGA
CGTCCGCGCTGCGGCTGCTGTCAGCGTGGCGACGCGCCGCCGCCACGGAG
CGCTCGAAGAGGGAGGCGTTGTCGCGCCTGGTGCGAGGAGCCCGGCGACG
GCGACTGCGCGGCGGGCTCGGCCGGTGGCGAGCGGGGACCCGGGCGGTCC
GGGCCAAGGAGGAGCGGCGAGCGGCGAGGGAAGGGGCGGCGGCGTCGGCG
GCGAAGGCGAAGGAGGCGGTGGCGGAGGCGGCGGTGGCGGCGGAGGCGGC
GGCGGCGGCCGCCAAGGGGAGGGCCGCGGCCGAGAAGCTAGCCACGGAGA
GGGAGAAGGAGCTGCGGCTAGAGAAGGCCGCGGGAGAGGGGCTGCGCGAG
GCCGTGGAGAGGCTGCAGAAAGAG