mRNA_Ecto-sp13_S_contig8395.19767.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8395.19767.1
Unique NamemRNA_Ecto-sp13_S_contig8395.19767.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8395.19767.1 vs. uniprot
Match: A0A6H5L7N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N2_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.640e-44
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 2 
Query:  413 DTSAPQALPSPSMTEIPFLANRPDVQDSVNAAHERLGLVTSYLRDIVRETQNFRKAGVAMAKASEDLGASLMSADHLDAPARAESFSDESRGDSGT 700
            DTSAPQALPSPSMTEIPFLANRPDVQDSVNAAHERLGLVT YLRDIVRETQNFRKAGVAMAKASEDLGA LMSAD L APARAESFSDESRGDSGT
Sbjct:    2 DTSAPQALPSPSMTEIPFLANRPDVQDSVNAAHERLGLVTHYLRDIVRETQNFRKAGVAMAKASEDLGAFLMSADQLHAPARAESFSDESRGDSGT 97
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BLAST of mRNA_Ecto-sp13_S_contig8395.19767.1 vs. uniprot
Match: D8LRY2_ECTSI (ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.840e-8
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 2 
Query:  590 MAKASEDLGASLMSADHLDAPARAESFSDESRGDSGT 700
            MAKASE+LGA LMSADHLDAPARAESFSDESRGDSGT
Sbjct:    1 MAKASEELGAFLMSADHLDAPARAESFSDESRGDSGT 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8395.19767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7N2_9PHAE1.640e-4495.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY2_ECTSI3.840e-894.59ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8395contigEcto-sp13_S_contig8395:2046..6786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score64.7
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog2880.D8LRY2
Model size701
KEGG koko:K12488,ko:K12489,ko:K14820
KEGG Pathwayko04144,ko04666,map04144,map04666
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
Cds size309
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464109.5192347-CDS-Ecto-sp13_S_contig8395:2045..21181681464109.5192347-CDS-Ecto-sp13_S_contig8395:2045..2118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8395 2046..2118 -
1681464109.531043-CDS-Ecto-sp13_S_contig8395:2612..27821681464109.531043-CDS-Ecto-sp13_S_contig8395:2612..2782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8395 2613..2782 -
1681464109.541762-CDS-Ecto-sp13_S_contig8395:6329..63951681464109.541762-CDS-Ecto-sp13_S_contig8395:6329..6395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8395 6330..6395 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464109.5541532-UTR-Ecto-sp13_S_contig8395:6395..67861681464109.5541532-UTR-Ecto-sp13_S_contig8395:6395..6786Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8395 6396..6786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8395.19767.1prot_Ecto-sp13_S_contig8395.19767.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8395 2046..6395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8395.19767.1

>prot_Ecto-sp13_S_contig8395.19767.1 ID=prot_Ecto-sp13_S_contig8395.19767.1|Name=mRNA_Ecto-sp13_S_contig8395.19767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MTSFVSTDTSAPQALPSPSMTEIPFLANRPDVQDSVNAAHERLGLVTSYL
RDIVRETQNFRKAGVAMAKASEDLGASLMSADHLDAPARAESFSDESRGD
SGT
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mRNA from alignment at Ecto-sp13_S_contig8395:2046..6786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8395.19767.1 ID=mRNA_Ecto-sp13_S_contig8395.19767.1|Name=mRNA_Ecto-sp13_S_contig8395.19767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8395:2046..6786- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACACGCTTTCCGCGGGCGGACGGAGTCGTCCACTGACCGCCCTGGTCC
ACACCCAAGCCGACATTTGGGGGCAACGCAGATTATGAAGCGGGGCGGGG
TGCCACGGTGTGTCTGTGTGTAGCAGTAGCTGGTGTTGTGGTGTTTTGTA
CCAAAGAAAAGAGCATCTTTCGACGAGAGAGAGCCAAAGGGACCTACCCC
GTGTACACCGACCCACGGTTTACCACCGGGAACCCCTTCGTGTCGGCCCG
TAAAGCTGTCGGGGAGGCTGGAGGAACAAGGAATCGCGAGAGGGGAGGAG
ACGAAGGGCGGGGGGTGAAAGAGCCGCTGCTGTGCGTGTGTGTGTCTCGG
CGACTGCTGCTGCTCGTTCCCCGAGGCCCATAATATTTAGCATGACGTCG
TTCGTTTCGACGGACACTAGCGCACCGCAGGCGCTGCCTTCACCCAGCAT
GACCGAGGTGAGCCCTCACTTACGGGCGTACGCCCCTGCGATGGTGGTAC
AGCTGGCGGTTTTGTGTCCTTTCTCCTCCTCGCAGGCACGGGCAATTGTT
TTTCCTGATCACAGAGTTTGTAAGCGGCATCAGTGTGCCTCTATTTCCAA
GCAAGAAGTATTTTTTGCGTGTGGGTGACATGGCGACCGGCCATGTTGGG
CGAGGGCGTGTTTTCGGTGTGCGGAAGCTTGAAAGGGACACGATCGATGT
CACCAACCTGAGAGAAAGCGCCTCCTCTCCAGTCCCTACTAGGCGTCACC
ACGGAAAGCTTCTTGGGCGTATTTTTTGTTACTCCAGAACATCAGCACAT
CCGTGTTGGGTCCATGAAACTCTCACTTTTCCTAGGGCTCCTCCGACCCA
GAGTGTACATACCACCACAACTTCCGGACCCTCAACCACACGCCGGTCGC
ACGGCACACGATTTCCAACGTATCGCGAGTGGATGCGCGTAACTAAGAGG
CATCTCCGTCTTTCGTTCGCGAAATCGTCCCGTTGGCCGAGAAGAGTGCA
GAGTGGGTCCAACGCTCGGGTGGTTGGCCTGTCGAGGGGCGGGGGAACGG
TTGCTGTGACCGATCGTGGTGATGATGCCATGGAGGCGGAACACGTAAAC
AGTAGTGCCGACCTCTCGCTCTTCTCTCTTGACTGCAACCGACTCATCTC
TACCGGTGTTCCCCTGCCCTCACACTCTGTCCGTTACAGCACGTAGTCCA
GGGATTCCGCACTCCCTCCGCTGGCACACACACTGTTAACGCATGCATGC
ATTTTGGTGCCGACTTTTCCCGACTTTTCAGACGCTACGAACTCGCGTCA
CGCTCCTTCTGTTTGGTAGACTACGTTTACTGCGGCGTGATTTTTTCACC
AGGAACATATGATACCTACAAACGTGTGTCATATGATTGCCCTCCGTCTT
CCTGTTGTTAGCGCGGTCGATTCTAATAATGAACAAAAACGACGCACAGG
AACGCGTGCGGTTTGTCATATTCGGCCAAGAGGCTTGTTGGCATGCATGT
TGTGCCAGCAGGTATGCATACGTCGGCAGTTATTTGGCGCCGCCGATTGC
TACCGGAAGTTATACACGTCCGCGCAACTATTTTGCTGCTTTACCGACAT
GTACCCCGGACTCCCAGTACGGACTAAATAGAGTTTCGTGTCGAACCAAG
AATCAGGTTCGAGGGATACGGCCTCAAGGCATTCGATATTCCACAACATG
TCGATGCGTTTCGGTATTCGATGGAGGACGGCTGCTTAGAGCACTAGCCC
TGTGGCCGCTAAGATGGCCGTTGGTCTATGCAACCTAGTATACATGGTTT
GTTGCGTCACGTGGCAGATTACCCTAGAAACCTTTGCAACCAACGTGGGC
TTCATTTCCACAGTAAGGCAAGGTTTTTGTTGGCGGCGGGTTGAGGGGGG
AGAATCATGTGCCAACTTCGCTGTTGGGTGTTCGTAGTGTATGCGGTCGA
GTCCATGCCAGGTATTCTACAGGCACAGCAGTTCATATCTACAAAGCGAG
ACATTTTTTGTTGTTCTTGTTGCTGTAGAGATGCATACATTTTATGCATA
GCTATTGTTCAACCCCGCTTAATCCCGCCAGGTTTGAAGGAGAGGGCAAA
CGGCAGGCACAGAATCGAATTTTCCGCGACCAAGAGTTCGTCTTCACAAG
AGAGCCAGTGAAACGCGCTGAACCGTTGTACAATGCGCTGAACCGGCCAG
CCACTTCCGGCGCACTCTCCAGACTGTGCCATTATTTTGTGGCGTGGGCG
GCCCGGTTCGTCCCGACCAATCCTCGCGTAGTAAAAGGTCAAGCCTGGCG
TGTTTGTACTGCACGCCCGGCATATCGACGACCCTAAAAATAACGTGAGC
TGTCGCGCAGAGGCAGGTAGGTCTATCGAAGAGACAAACGAACATCTCAC
ATATGGTTACCCATGCAAGTACTCCAGAAACGAAAGGCCAGCACCGTACA
AATTCAACCACTTGTCAACAAAACAGGTATGCAGACTAGAGTGTATATGC
ACACGGTTTCGCAAGAGTGGGTCGGTGAGGTTAGAAGCAGCAGCTGCTGT
TTCTACCGCATGTTAACCGTTGCGGCGCTGACATTAGTGCCGTCATACAA
CGTGGTTCTCAATCGGGATACTCGAGGCATACGGTACAGGAGGCGGAGGA
ATGGCACCGCCCCGCAGACCGAACCCGACTGCTCCACGACTAACATTGTG
CCAACACCAAGTTTGGTGGTTTGGGAAACGTTTCATCGATGGCTGTCCGT
AGATGTACGGGACCCTCGATTTGAAGTTGGAGAGGTATCGAGCTTTGAGC
TTCGGTCAAGTGGAGGTGCCATCTCTCCGCCTCGTTCAGAATGCCACCGT
ACGGTATACAGTACGGTACAGACAATCTTGGTCGTGGAGTAATCGAGCTT
TGAGAGTCATTCAAGGGGAGGTGCAATCTCTCCGCCTCTTACACCGCCTG
GTGTCGTAAGGCTTGTCGGCTGCGGTGATGTTTGTGGCGTGACATGTGTG
ACCCGTGTTTGTATTTTTGTATCGTGTTGCACAGTCCAAGATCCTCGAAG
TACAGATCGATTTGTTTCGGATCGAACATCGAACAGCAGGCTTTGGTACG
AATTCTGAATCGATACGTGTGTGCCCGACCGATGCCGACAGGTTAGATAC
GATAAGCAAGCCTGTCGTCCACCCTTTGTGATTGTTTTCGAAAGACATCG
AATTCGTCTCCATCTACGGATACGAGTCCGAGACAGACACGCGATGAGAT
GTATTCAGCGTTGATTTTTCTTCTTCTTGGTCTCTCTCTGTCCATTCGAT
ATGTACGCCGGCCCACATAAGCCACTGTATGGTTACGGAGAAATTCCTTA
CACTGCAAATCACTCTGGCCGATAAGCGGACAAGACTACCTCAGCAACAC
CTACGTTTTGCTGCGTGTACGGGTGGACTGGGGTTGTCACGTAACCGTGT
GTCATTTGCAACAGAACACGATTGTACCAAAGCGGGACCTGCATTACTGG
ACCGCCTTGACGTTTTTTTTCGTTCTTAATCTGTGAAACAGACAGGGGGG
TTCGTGTCCTAGATTTATCTATCCCTGACCGTACGCAGTACCCCCTACTA
AAAGCAAGATTAGTATCCTCGCGAAGGCTGCTGTCTGTTTACTCAGAGAC
AGCAAGACTAGTGCCGAATGGGGGGGTTATCCGCTTGTCAAAGCTTTCGA
CGGAATGTTGATCAAGGCTGGGGGCTCTTGGATACCTTGTGCCCCCGGCC
CTGGCACCAAGTTGAACAGAGGAAGTCGGTGCACGGGGGTGATGTACTGT
AGGTGTGGAGCAATCTGGAGTCCAACTCTCCTCGTTCGGCATTTGCATGT
CGGTGTGGATATATGGATGTGGAGATGTCATTTACTACTGCCGTTACTGC
CGTGTTACCTCCTCCTTGCCAACTGCTCCCTTGCCGTCAGTAGCCCCAAC
ACAACCCCATGCCCCTGACAATAACGCCACCTTGAAACCCATCTGGAAAA
CCAGATTCCCTTCCTGGCCAACAGACCGGACGTACAGGATTCTGTTAACG
CCGCCCACGAGCGTCTTGGGCTGGTGACTAGCTACCTGCGGGACATCGTT
AGGGAGACGCAGAACTTTAGGAAGGCCGGGGTGGCCATGGCGAAGGCTTC
GGAGGACCTCGGAGCTTCCCTCATGTGAGCTTTTTTTTTTCTTACTGCTG
GTGTCTTGCGTCGTTTTTGGACGCTGTTTGTGTTCGTCGTCGTCGTTGTT
GTCATCGTCGTCGTCGTCGTCGTTGTTGTTGTTGTTGTTGTTTGTTGTTG
TTTGTTGTTGGTCGTGTCTTAGTGTCCCATAGTAGAAGCTGAGGCAAAAC
ATCGTCCCTGTCTGTTGTTGGTTTTTGCCCCAAGAGCTCATCTCGGCCTC
GACCGGTGGCACGCGGTGCTAGTCGCAAGCATGCCACACGGACCAGAACA
CCCCGCGTTGCAAATCATGGCGTGCCCGTGTGCCCTGAACCCTGACCATC
AACCACAGGGGAAATGCTCTGGTACCACGGAACAATCGACCGTAGGGGAA
CCGAAGGCCCCAATGGTGACAAGAATAAACACGCTTAAACCTCGCCCCCA
AAACGAAACCGCCATGCACTTTTCGATAAACCCCAACCTCCGGCGACGAA
AAATGTGGTATTTTACAGGTCGGCGGATCATCTCGACGCGCCGGCACGGG
CTGAATCGTTTTCGGACGAGTCGCGAGGGGACAGCGGGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8395:2046..6786-

>mRNA_Ecto-sp13_S_contig8395.19767.1 ID=mRNA_Ecto-sp13_S_contig8395.19767.1|Name=mRNA_Ecto-sp13_S_contig8395.19767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8395:2046..6786- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTCGTTCGTTTCGACGGACACTAGCGCACCGCAGGCGCTGCCTTC
ACCCAGCATGACCGAGATTCCCTTCCTGGCCAACAGACCGGACGTACAGG
ATTCTGTTAACGCCGCCCACGAGCGTCTTGGGCTGGTGACTAGCTACCTG
CGGGACATCGTTAGGGAGACGCAGAACTTTAGGAAGGCCGGGGTGGCCAT
GGCGAAGGCTTCGGAGGACCTCGGAGCTTCCCTCATGTCGGCGGATCATC
TCGACGCGCCGGCACGGGCTGAATCGTTTTCGGACGAGTCGCGAGGGGAC
AGCGGGACG
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