mRNA_Ecto-sp13_S_contig8393.19766.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: A0A6H5KRS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS9_9PHAE) HSP 1 Score: 532 bits (1370), Expect = 1.530e-185 Identity = 282/312 (90.38%), Postives = 290/312 (92.95%), Query Frame = 1
Query: 61 MPSTVRCVCRRIFRAITARWFISVLIVVACQATSTLRNRGATSATASTCA-RSAXXSSAGATSTCRASRSAFLLSARCRTTFRSQPHRRGVPTRRGTHHRSRRYFPHRYTELLRMGARSGDDSYRGVPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLLGIRALQKLEDAAEA 993
MPST+R VCRR FRAITARW +SVLIVVACQATSTLRNR AT A STC+ + A SSAGATSTCRASRSAFL S+RC T FRSQPHRRGV TR GTHHR RRYFPHRYTELLRMGA SGD+ Y+G PAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVE SMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNL FIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAI+PQMVPLSQLVLLGIRALQKLEDAAEA
Sbjct: 1 MPSTMRRVCRRPFRAITARWLLSVLIVVACQATSTLRNRCATPAATSTCSMQGACSSSAGATSTCRASRSAFLPSSRCGTKFRSQPHRRGVSTRPGTHHRIRRYFPHRYTELLRMGAGSGDERYQGAPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVELSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 312
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: D8LN10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN10_ECTSI) HSP 1 Score: 374 bits (960), Expect = 3.080e-125 Identity = 192/198 (96.97%), Postives = 193/198 (97.47%), Query Frame = 1
Query: 400 MGARSGDDSYRGVPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLLGIRALQKLEDAAEA 993
MGARSGD SYRG PAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNL FIDEQEPKSVEEFHIKSQ VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAI+PQMVPLSQLVLLGIRALQKLEDAAEA
Sbjct: 1 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQ--VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 196
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: A0A1Y1HTH8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTH8_KLENI) HSP 1 Score: 114 bits (286), Expect = 3.060e-25 Identity = 70/196 (35.71%), Postives = 109/196 (55.61%), Query Frame = 1
Query: 409 RSGDDSYRGVPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTR-----VPGQTLTGVEKRYRTQWISALDFVMQNLNFIDE---QEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLLGIRALQK 972
R+ D P G R L +CQ + A E+CVEN GRP A ++ DFV ++E G S++++ ++LQ V G LTG E+RYR+QW+ + +Q L E Q+P + +E I A + V+ G++T +EQ+ VKFD+AL+T G +GG +E + PQ +P++QLVLL ++ L +
Sbjct: 57 RAASDGTNSQPQGCRS----LDDVCQDIEKAFSEVCVENLGRPAAAALFDFVAATVEAYMLGASRDKVTIQLQYGSKEAYRIERDVAGYRLTGSEERYRSQWLDVIYTTLQLLKQGSEEWRQQPATQDESLI---AIIHRVLEGQRTGEEQSLVKFDRALSTAGASGGATSERRVVAPQWIPVTQLVLLTMKVLNE 245
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: A0A388LBA0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LBA0_CHABU) HSP 1 Score: 114 bits (284), Expect = 2.470e-24 Identity = 67/198 (33.84%), Postives = 108/198 (54.55%), Query Frame = 1
Query: 415 GDDSYRGVPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQL----LDST-TRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQAS-VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLLGIRALQKLEDAAE 990
G R +P G R L LC+ + A E+CV+N GRP ++ DF + E G++++QL LEL+ +D + G LT E+RYR+QWI + + + ++ +E + + + + V V+ G++T +EQT VKFD+ALAT G +GG A + I PQ VP+SQ+VLL ++ + + + E
Sbjct: 119 GKSEDRELPRGDT-SGRSLPQLCRLVERAFFEVCVQNLGRPAGMALYDFTVATSEAFFKGFTRDQLALELRFGSHHMDGYGVQAAGYRLTSSEERYRSQWIDTIYVTLHMMKVVEPEEASNTPDMGDEWLRNIVHRVLEGQRTGEEQTAVKFDRALATAGASGGAAAQKKVIAPQWVPVSQIVLLTMKVVAEAQARHE 315
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: A0A2R6W5D4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W5D4_MARPO) HSP 1 Score: 112 bits (279), Expect = 4.040e-24 Identity = 62/181 (34.25%), Postives = 103/181 (56.91%), Query Frame = 1
Query: 460 KRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLD-----STTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSV-----EEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLLGIRALQK 972
K L +C+ + E+CVEN+GRP ++ +FV ++ +G+++++L L+L D S G LT E++YR+QW+ + +Q L +D Q +S + H+ S V V+ G+Q+ DEQ+FVKFD+ LAT G +GG + A+ PQ +PL+QLVLL ++ + +
Sbjct: 82 KPSLADICRCLQHCFFEICVENRGRPAGTALHEFVGAAVAAYLAGHTRDRLSLQLAYGDNGMEESKLETEGFRLTASEEQYRSQWLDTIYTTLQFLKVVDNQASRSSLVTAQTDSHLFS--IVRRVVEGQQSGDEQSFVKFDRGLATKGASGGAIAQREAVAPQFIPLTQLVLLTMKVVNE 260
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: A0A0G4F2M6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2M6_VITBC) HSP 1 Score: 100 bits (248), Expect = 2.490e-20 Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 484 QAMNDAILEMCVENKGRPLAKSMTDFVEFSMEG-LASGYSKEQLLLELQLLDST--TRVPGQTLTGVEKRYRTQWISALDFVMQNLNFID-----EQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLLGIRALQK 972
+++N E C+ N+GR LA+++ DFVE ++ + G S QL LE Q+ R P + LT +K R +WI + ++ L + E E S Q V ++G+QT D Q++V FD++LAT G GGVATE +A+ PQ++PLSQLVLL ++A+ +
Sbjct: 47 RSLNLYYREACLHNRGRSLAEALGDFVEECVDVFIYGGCSPVQLQLETQVEGEIHCERNPLERLTQDDKEARARWIRCVWLTLRTLGVVSVRRDSEVEGPSTSAADAALQGLVSTTVKGQQTGDRQSYVPFDRSLATRGNQGGVATENVAVPPQVIPLSQLVLLTMKAVNE 217
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Match: A0A2K1KSW5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSW5_PHYPA) HSP 1 Score: 94.4 bits (233), Expect = 7.140e-18 Identity = 50/166 (30.12%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 469 LVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQ-----LLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAITPQMVPLSQLVLL 951
L +C+ ++ E+CV+N GR +++ +FV +++ +GY+ ++L L++ + + G LT E+ YRTQW++ + +Q L D + S +++ + + G++ +EQ+ VKFD+ LAT G +GG +E + I+PQ VP++Q+VLL
Sbjct: 100 LDDVCRRLHLCFFEICVQNLGRSAGQALHEFVCAAVDAFMAGYTFDRLNLQIVHGSGGMEEFKMENAGYRLTASEEYYRTQWLTTIYVTLQMLKVADNEASASFVTENLQLVQIIHRTLEGQRHGEEQSLVKFDRGLATKGASGGAVSEKLVISPQWVPVTQIVLL 265 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8393.19766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8393.19766.1 >prot_Ecto-sp13_S_contig8393.19766.1 ID=prot_Ecto-sp13_S_contig8393.19766.1|Name=mRNA_Ecto-sp13_S_contig8393.19766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp MPSTVRCVCRRIFRAITARWFISVLIVVACQATSTLRNRGATSATASTCAback to top mRNA from alignment at Ecto-sp13_S_contig8393:2507..5955- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8393.19766.1 ID=mRNA_Ecto-sp13_S_contig8393.19766.1|Name=mRNA_Ecto-sp13_S_contig8393.19766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8393:2507..5955- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8393:2507..5955- >mRNA_Ecto-sp13_S_contig8393.19766.1 ID=mRNA_Ecto-sp13_S_contig8393.19766.1|Name=mRNA_Ecto-sp13_S_contig8393.19766.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8393:2507..5955- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |