mRNA_Ecto-sp13_S_contig8387.19755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8387.19755.1
Unique NamemRNA_Ecto-sp13_S_contig8387.19755.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8387.19755.1 vs. uniprot
Match: D7FKV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV9_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 7.670e-30
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 3 
Query:    3 ASPPGAAAGGWHTRMADQPFKCSEPLCKLGWQYGKYREDKEKALRAVDRSFGDHSPLHSSRAPSKPSEKAQGT--------LWMDAEDDVVGS 257
            ASPPGAAAGGWHTRM+DQPFKCSEP CKLGW+Y +YREDKEKALRAV R FGDH+P      P   + + +G         LW   E  V+G+
Sbjct:    2 ASPPGAAAGGWHTRMSDQPFKCSEPRCKLGWEYLEYREDKEKALRAVGRRFGDHAPYIPLGHPPDRARRHKGNYGWTLRKMLWALEEFYVIGT 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8387.19755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKV9_ECTSI7.670e-3059.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8387contigEcto-sp13_S_contig8387:4823..5932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_001550.1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.6748989-CDS-Ecto-sp13_S_contig8387:4822..50211681464108.6748989-CDS-Ecto-sp13_S_contig8387:4822..5021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8387 4823..5021 -
1681464108.693451-CDS-Ecto-sp13_S_contig8387:5804..59321681464108.693451-CDS-Ecto-sp13_S_contig8387:5804..5932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8387 5805..5932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8387.19755.1prot_Ecto-sp13_S_contig8387.19755.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8387 4823..5932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8387.19755.1

>prot_Ecto-sp13_S_contig8387.19755.1 ID=prot_Ecto-sp13_S_contig8387.19755.1|Name=mRNA_Ecto-sp13_S_contig8387.19755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
WPRHQGPQLEDGTRGWRTSPSSARSRSASWGGSTASIERTRRRPCGLLTA
VLATIPPYIPLGHPPNRARRHKGHYGWTLRTMLWALEEFYVIGTFVPIAP
EVSVQVGL*
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mRNA from alignment at Ecto-sp13_S_contig8387:4823..5932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8387.19755.1 ID=mRNA_Ecto-sp13_S_contig8387.19755.1|Name=mRNA_Ecto-sp13_S_contig8387.19755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8387:4823..5932- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCTCGCCACCAGGGGCCGCAGCTGGAGGATGGCACACGAGGATGGCG
GACCAGCCCTTCAAGTGCTCGGAGCCGCTCTGCAAGCTGGGGTGGCAGTA
CGGCAAGTATCGAGAGGACAAGGAGAAGGTGATTGGAGAGTGGTTTCCTG
CCGGCACGCAGCGGATGTCCCGGCTCTTGCCTTGCGGGAGGTTCGAAGCG
TTTTGCCCTGGCCACTTTGAGGCAGGAAAGCGTCGCAAGCCGGGCGATTA
TCGACTAAATACTGCGCCCCACCCAACGGCGCCTCTATCTTCGCCGGGAC
TGTCAGCTTCAGGGCTTCCCGTTCCTGCTGCCGTTGCTACTACCCAGCCA
GCAACGCCGCTCCTCCCTGCAGGAGACACATGCTCTGCCCCAGGCTGTGA
AAGGCGTGCACTTTAAGGCAAAGTTGGCGGCGCCAGGGAGCGTTGCGCGC
CGCACGCAGAGTACGGCATGGTGAACGCCGTTTCCCGTGTGCATAGTGTT
CCATCCTTGCCACCTGTGCAAGCGCCTGGAGCAGGGCTCCGAACAACAGC
ACCAGCTCCATCATCGGCAGCAGCAGCCCCACTGCTTCACATCCGTTCGG
TCAAAGCTCGCGGTGCACCCCCCCCTGGAACGACGCAAGCACGCATCGAC
ACGAACGTCAACTTGGCAAAAGCGTTGTATCCAGATCAACCCCCGCTTAA
ACCGGACGATGTTGACCGCTCCCCGGCTCCCGAGTCAAGACCTCAGCGGC
ACGAAACCACAACAAACGAGGACGCCTCCCGCATGGTGGAGCGCGTCGTA
GAGGTACACCGCAGCCATTTGCCGAGGCCTACACCGGATGGCGGCCTGGA
ACCCGTGAGCAACACTCCAAGAGTCTACACCCCCGCGGACGCAGCTCTCT
TGACGCAACAGGCCCTGCGGGCTGTTGACCGCAGTTTTGGCGACCATTCC
CCCCTACATTCCTCTCGGGCACCCTCCAAACCGAGCGAGAAGGCACAAGG
GACATTATGGATGGACGCTGAGGACGATGTTGTGGGCTCTGGAGGAGTTC
TACGTCATTGGCACCTTTGTCCCCATCGCTCCAGAGGTAAGCGTGCAAGT
CGGACTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8387:4823..5932-

>mRNA_Ecto-sp13_S_contig8387.19755.1 ID=mRNA_Ecto-sp13_S_contig8387.19755.1|Name=mRNA_Ecto-sp13_S_contig8387.19755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8387:4823..5932- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCTCGCCACCAGGGGCCGCAGCTGGAGGATGGCACACGAGGATGGCG
GACCAGCCCTTCAAGTGCTCGGAGCCGCTCTGCAAGCTGGGGTGGCAGTA
CGGCAAGTATCGAGAGGACAAGGAGAAGGCCCTGCGGGCTGTTGACCGCA
GTTTTGGCGACCATTCCCCCCTACATTCCTCTCGGGCACCCTCCAAACCG
AGCGAGAAGGCACAAGGGACATTATGGATGGACGCTGAGGACGATGTTGT
GGGCTCTGGAGGAGTTCTACGTCATTGGCACCTTTGTCCCCATCGCTCCA
GAGGTAAGCGTGCAAGTCGGACTTTGA
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