prot_Ecto-sp13_S_contig834.19702.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig834.19702.1
Unique Nameprot_Ecto-sp13_S_contig834.19702.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length369
Homology
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BLAST of mRNA_Ecto-sp13_S_contig834.19702.1 vs. uniprot
Match: A0A6H5KLT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.590e-23
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0 
Query:    1 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTSSSVDPAPEPTPAVAEIDPSDEPPSDTPXXXXXXXXXXXXXXXXXVEQEEDTPAPVDDESV 102
            MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDT SS+DPAPEPTPAVAEID SD       XXXXXXXXXXXX XXXXVE+E+DT APV++ESV
Sbjct:    1 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTGSSLDPAPEPTPAVAEIDASDXXXXXXXXXXXXXXXXXXXPXXXXVEEEQDTLAPVENESV 102
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BLAST of mRNA_Ecto-sp13_S_contig834.19702.1 vs. uniprot
Match: D8LB64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB64_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.230e-16
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 0 
Query:    1 MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTSSSVDPAPEPTPAVAEIDPSDE 63
            MRLLRWRCALLIATLAASN+VSPANSQDSS TSAGDDVEDTSSS DPA     AVAEIDPSD+
Sbjct:    1 MRLLRWRCALLIATLAASNVVSPANSQDSSLTSAGDDVEDTSSSSDPAXXXXXAVAEIDPSDD 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig834.19702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLT6_9PHAE1.590e-2384.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB64_ECTSI2.230e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..369
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig834contigEcto-sp13_S_contig834:16321..21196 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig834.19702.1mRNA_Ecto-sp13_S_contig834.19702.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig834 16206..21196 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig834.19702.1 ID=prot_Ecto-sp13_S_contig834.19702.1|Name=mRNA_Ecto-sp13_S_contig834.19702.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=369bp
MRLLRWRCALLIATLAASNLVSPANSQDSSPTSAGDDVEDTSSSVDPAPE
PTPAVAEIDPSDEPPSDTPSPVEEEEEEEDEPTPSPVEQEEDTPAPVDDE
SVDTPAPSAEEEDAPETPAPVEEEEEEETPSPVEDIEETPQPTPGEEEAE
ETLAPVEETPSPVGEVEETPAPVAEVEETPEPTLQEEEEETPAPAEETPF
SVEEVEETPAPVEEVEETPRPTPEEEEETPAPEEETPSPVEEVEETPQPT
PAEEEAEETPAPVEETPSPVEEVEETPAPVEEVGETPRPTPEEEEETPAP
AEETPSPVEDAQEEEAETTAPEAATLEPAEAATPAPTEAESLEPTEPATP
EPTVRWTYAPADPWTESPG
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