mRNA_Ecto-sp13_S_contig8333.19697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8333.19697.1
Unique NamemRNA_Ecto-sp13_S_contig8333.19697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8333.19697.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 2.590e-96
Identity = 138/143 (96.50%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:    1 ELEQVACTWPLDGPCTTETLFSDINRGLGAYYYPGCSGAGCGVGDSGLCRTCYFNLTMGEEGNGDDVDMPDYPECPCCVMDEYDRSADRCVGATQSPALGTGTEGLETYSFEDKPLDMSGGEGFAVAALALFGLLTFLPLCTK 429
            ELEQVACTWPLDGPCTTETLFSDINRGLGAYY PGCSGAGCGVGDSGLCRTCYFNLTMGEEGN DDVDMPDYPECPCCVMDEYDRSADRCVGAT SPA GTGTE LETYSFEDKPLDMSGGEGFAVAALALFGLLTFLPLCTK
Sbjct:  463 ELEQVACTWPLDGPCTTETLFSDINRGLGAYYDPGCSGAGCGVGDSGLCRTCYFNLTMGEEGNDDDVDMPDYPECPCCVMDEYDRSADRCVGATPSPAQGTGTEALETYSFEDKPLDMSGGEGFAVAALALFGLLTFLPLCTK 605
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BLAST of mRNA_Ecto-sp13_S_contig8333.19697.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.090e-27
Identity = 63/162 (38.89%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:    7 EQVACTWPLDGPCTTETLFSDINRGLGAYYYPGCSGA-------GCGVGDSGLCRTCYFNLTMGEEGNGDDVDMPDYPECPCCVMDEYDRSA-----DRCVGATQSPALGTGTE---------GLETYSFEDKPLDMSGGEGFAVAALALFGLLTFLPLCTK 429
            ++ AC  P   PCT  T FS+ N G+G YY P C          GC    S LCR C+FN  +    + D+ D+PDYP+CPCCV+D Y++ A      RCV A+ +P+    TE         G +  SF+D   +M+ GE  A++AL L   LTF P C+K
Sbjct:  408 DEGACILPESKPCTEATSFSNTNEGIGDYYDPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDE-DLPDYPDCPCCVLDIYEQDAFNLDGQRCVSASPAPSSPALTEIPVGEITPRGFDDLSFDDGGWEMNAGEVAALSALGLLAALTFFPFCSK 568
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BLAST of mRNA_Ecto-sp13_S_contig8333.19697.1 vs. uniprot
Match: D8LE42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE42_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.370e-24
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:  130 GDSGLCRTCYFNLTMGEEGNGDDVDMPDYPECPCCVMDEYDRSADRCVG 276
            GDSGLC  CYFNLT+GEEG+GDDVD+PDYPECPCCVMDEYDRS DRC G
Sbjct:  226 GDSGLCPPCYFNLTLGEEGDGDDVDVPDYPECPCCVMDEYDRSVDRCSG 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8333.19697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JBT9_9PHAE2.590e-9696.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9X3_9PHAE4.090e-2738.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE42_ECTSI4.370e-2485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8333contigEcto-sp13_S_contig8333:461..2631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categoryother localisation
Exons3
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464103.9277492-UTR-Ecto-sp13_S_contig8333:460..5901681464103.9277492-UTR-Ecto-sp13_S_contig8333:460..590Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8333 461..590 +
1681464103.9394836-UTR-Ecto-sp13_S_contig8333:798..8391681464103.9394836-UTR-Ecto-sp13_S_contig8333:798..839Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8333 799..839 +
1681464103.9717321-UTR-Ecto-sp13_S_contig8333:2602..26311681464103.9717321-UTR-Ecto-sp13_S_contig8333:2602..2631Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8333 2603..2631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464103.950109-CDS-Ecto-sp13_S_contig8333:839..9361681464103.950109-CDS-Ecto-sp13_S_contig8333:839..936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8333 840..936 +
1681464103.960986-CDS-Ecto-sp13_S_contig8333:2438..26021681464103.960986-CDS-Ecto-sp13_S_contig8333:2438..2602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8333 2439..2602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8333.19697.1prot_Ecto-sp13_S_contig8333.19697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8333 840..2602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8333.19697.1

>prot_Ecto-sp13_S_contig8333.19697.1 ID=prot_Ecto-sp13_S_contig8333.19697.1|Name=mRNA_Ecto-sp13_S_contig8333.19697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MGEEGNGDDVDMPDYPECPCCVMDEYDRSADRCVGATQSPALGTGTEGLE
TYSFEDKPLDMSGGEGFAVAALALFGLLTFLPLCTK*
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mRNA from alignment at Ecto-sp13_S_contig8333:461..2631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8333.19697.1 ID=mRNA_Ecto-sp13_S_contig8333.19697.1|Name=mRNA_Ecto-sp13_S_contig8333.19697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8333:461..2631+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTCGAACAGGTCGCCTGCACCTGGCCTCTCGACGGCCCGTGCACCAC
TGAGACTCTGTTTTCCGACATCAACCGGGGCTTGGGGGCGTACTACTACC
CGGGCTGTTCCGGCGCCGGCTGTGGAGTAGGTAAAGCCGCTGGATGATGC
ACGCACACGTTTACAATTGTTTTTTTACCGACTTGCTTCCAGCCGGGGGG
GGGGACGGAGGGGGCACGAGCTATGAAACCAAGAACAAGGAAAAAGAATC
GTGGATCCAGAAGTTACTTGAGCGATCGATCGATCACCCATTGGTTGTTG
TTTGCTTGCCACCCTTAAACACCCGGCTGGCTGACCAGGCGACTCGGGTT
TGTGCCGCACCTGCTACTTCAACCTAACCATGGGCGAGGAGGGCAACGGC
GATGACGTTGACATGCCGGACTACCCCGAGTGCCCCTGCTGCGTGATGGA
TGAGTACGACAGGAGCGCCGACCGATGTAAGCCCTACGCCCACCGTGTTA
TCACTTTTTTTTGCGATCTGTCGATGTTGTTGGGACGGGGGGGGGTTGGT
AGGTTTCCTTGTTCGTCTTTGCCCCGAAGTAAGCCCTAACCCCTCCGTGT
GCTCTGGTGTGCTTTGCTGCCCATCGCTGCTGTTGGTTATTGGTGGGACG
GGGGGGATCCGGTTGGTTTGGTGGTTCGCCTTTGATGCCCTTCAGCCGCA
CATTTGATGACTTGCGTGACACCGTGTGGAAACATCCATCCATCCCCTGT
AGGTGACGCCAGCACTGACAAGAGTAGGGTATGATATCGTCGTCGTTGTT
GTTGTTGTATTTTCAGTCTCTTTTGAAGGTTCGGGCTGAAGTTGGGGATA
GGGTGAGCCACGGTTAGGTTTACCATCGAGAGCAGCAGCAAGGGGCATCG
ATCGCTGCCGACCAAGCGGTGCGAATCAATCGCGGTGGTTCTGGTTGTCG
CCGTTGCGCATTGCCGCATGCACTGCTGTCAGACCTTTCTACCGCATTGG
CACCCTCGAGGTGATGAGTAGGAAGCCTTTCCCTAAGGCTATCGACACGC
ACGCGTACCTCCTCCTGCTGTCGTTTTCATCCTCATAACACGTGGTAGGA
ACTACACTGTATATCCGGAGCTCGATCTTGTCTTCACGCGTGAAACTGGC
TTGTATGCCGCCCAAGAAGGGCATGGGAAAAGCGGAGCTAACAAAAATGC
GAAGTAGGGAAGAACGCAAAAAGGGCGACCTCAGCTTACGGGCGTCTTCC
CGGGGACTAACTAGACAGCGAAAATCATAGTGTTTTCCTGAAACTCAAGG
CATGTGATGCGTGGCCAATCAACGGTCTAAAAAAATCACCACCACCGGCG
GTATAATAATCGAGGCACCTGTTTCTCCCCCCCCCCCCGCCCCGGTGTTT
GTCACCGGGGTTGGGTCTTCGTCGCTTGGCAACGACGTTGTAAAACAAGT
CGATCACTTCGTGAGCTCGGCTGCCTGGTTACCGCTTCTTTTTGATCGCC
TCTGGCTTTTTTTTTTCGGTAACCATACGTGAATGGTGGTCGAGTAGATT
ATGTTGTGCAGGCTCGACAACTCTCACTCCGCGCAAAGGGGATGATCGCA
CCACGTTGTGTCGAAATGATCAAGCACCCTCGAGGCAGTTACACAATAGT
GCTTATAATATGGAAGTGAAAGCACCAGAAAATAAATCACGTCATACGCA
GCTGTCATCCGTACGCGAGGAAGCAAGCACAAGATGCCGAACACCCTAGC
AGGATGCAGCGCATCCTTCATGCGACTCGCCGAGTACCTCACGGTGCTTC
GCACTTGGTGATGTGAGAGCCTGGTCCGGTGAAAACCCGGCGTGCTCCGT
CCGGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCA
CGACTATGAGTACCCCCCACCCCGCCCCCAAACCAACACCTCCCCGTTTT
GACGCGATGAAAAATGACAACGACACAGGCGTGGGAGCGACCCAATCTCC
TGCTCTGGGAACCGGCACAGAGGGCCTAGAAACGTACAGCTTCGAGGACA
AGCCCCTGGACATGTCGGGCGGGGAGGGGTTTGCCGTCGCGGCGTTGGCC
CTCTTCGGCTTGCTGACCTTCTTGCCTCTCTGCACCAAGTGAACGACAAG
AAACAAAAACACTCACACATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8333:461..2631+

>mRNA_Ecto-sp13_S_contig8333.19697.1 ID=mRNA_Ecto-sp13_S_contig8333.19697.1|Name=mRNA_Ecto-sp13_S_contig8333.19697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8333:461..2631+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGAGGAGGGCAACGGCGATGACGTTGACATGCCGGACTACCCCGA
GTGCCCCTGCTGCGTGATGGATGAGTACGACAGGAGCGCCGACCGATGCG
TGGGAGCGACCCAATCTCCTGCTCTGGGAACCGGCACAGAGGGCCTAGAA
ACGTACAGCTTCGAGGACAAGCCCCTGGACATGTCGGGCGGGGAGGGGTT
TGCCGTCGCGGCGTTGGCCCTCTTCGGCTTGCTGACCTTCTTGCCTCTCT
GCACCAAGTGA
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