mRNA_Ecto-sp13_S_contig8321.19677.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8321.19677.1
Unique NamemRNA_Ecto-sp13_S_contig8321.19677.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8321.19677.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 3.590e-111
Identity = 189/203 (93.10%), Postives = 192/203 (94.58%), Query Frame = 3 
Query:    3 GGSGKVEGGPAETQHKGWAPTASPCIFGYHSTDAGTISPRDGGDRRGRDLSVSDTLDGDEEPPAGPSKVPPLRGWECSSSSPSPPPLPSRPLEPSADGRHGGLERPSHVWPRPVDAAKAGRKLDLDDDSDGESMPQMVPLHRLPSIGTGSGDGPAAAGARSRQSLCAATKKNGQSAA--AAHKPKKKLGGKAEYAMLPLASAE 605
            GGSGKVEGGPAE +HKGWAPTASPCIFGYHSTDAGTISP  GG RR RDLSVSDTLDGDEEPPAGPSKVPPLRGWE SSSSPSPPPLPSRPLEP+ADGRHGGLERPSHVWPRPVDAAKAGRK DLDDDSDGESMPQMVPLHRLPSIGTGSGDGPAAAGARSRQSLCAA KK G+SAA  AAHKPKKKLGGKAEYAMLPLASAE
Sbjct: 1998 GGSGKVEGGPAERRHKGWAPTASPCIFGYHSTDAGTISPT-GGARRRRDLSVSDTLDGDEEPPAGPSKVPPLRGWESSSSSPSPPPLPSRPLEPTADGRHGGLERPSHVWPRPVDAAKAGRKPDLDDDSDGESMPQMVPLHRLPSIGTGSGDGPAAAGARSRQSLCAAAKKRGESAATAAAHKPKKKLGGKAEYAMLPLASAE 2199
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BLAST of mRNA_Ecto-sp13_S_contig8321.19677.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 8.350e-108
Identity = 181/201 (90.05%), Postives = 186/201 (92.54%), Query Frame = 3 
Query:    9 SGKVEGGPAETQHKGWAPTASPCIFGYHSTDAGTISPRDGGDRRGRDLSVSDTLDGDEEPPAGPSKVPPLRGWECSSSSPSPPPLPSRPLEPSADGRHGGLERPSHVWPRPVDAAKAGRKLDLDDDSDGESMPQMVPLHRLPSIGTGSGDGPAAAGARSRQSLCAATKKNGQSAAAA--HKPKKKLGGKAEYAMLPLASAE 605
            SGKVEGGPAE  HKGWAPTASPCIFGYHSTDAGTISP+ GG RR RDLSVSDTL+GD EPPAGPSKVPPLRGWE SSSSPSPPPLPSRPLEP+ADGRHGGLERPSHVWPRPVDAAKAGR+ DLDDDSD ESMPQMVPLHRLPSIGTGSGDGPAAAGARSRQSLCAATKKNG+S      HKPKKKLGGKAEYAMLPLASAE
Sbjct: 2295 SGKVEGGPAERHHKGWAPTASPCIFGYHSTDAGTISPKHGGARRRRDLSVSDTLEGDREPPAGPSKVPPLRGWESSSSSPSPPPLPSRPLEPTADGRHGGLERPSHVWPRPVDAAKAGRQPDLDDDSDDESMPQMVPLHRLPSIGTGSGDGPAAAGARSRQSLCAATKKNGESXXXXXXHKPKKKLGGKAEYAMLPLASAE 2495
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8321.19677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIK8_ECTSI3.590e-11193.10Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5V9_9PHAE8.350e-10890.05Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8321contigEcto-sp13_S_contig8321:1682..2421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size740
Hectar predicted targeting categoryother localisation
Exons1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.3427896-CDS-Ecto-sp13_S_contig8321:1681..24191681464102.3427896-CDS-Ecto-sp13_S_contig8321:1681..2419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8321 1682..2419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8321.19677.1prot_Ecto-sp13_S_contig8321.19677.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8321 1682..2419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8321.19677.1

>prot_Ecto-sp13_S_contig8321.19677.1 ID=prot_Ecto-sp13_S_contig8321.19677.1|Name=mRNA_Ecto-sp13_S_contig8321.19677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
AAAPERLRGVPRRRSTRAGPRPPAPASSATTARTRVRSHPEMAAIAVAVT
CPSATPSTVTRSHPPVLRRSRPCAAGSVRPPRRPRRRYRVDRWSRAPTAA
TAGSNGRRTCGQGLSMLPRPAGNWTLTMTQTASLCRKWSRSTGCRASAPV
AATGRLRRGRGRARAFVRRRRRTGSPRRRRISPRRSWGARRSTPCCPWPV
PSSRGAIVLRANICYCPIHPSWMNTLSRVKHARVRRWCSDAKKLDL
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mRNA from alignment at Ecto-sp13_S_contig8321:1682..2421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8321.19677.1 ID=mRNA_Ecto-sp13_S_contig8321.19677.1|Name=mRNA_Ecto-sp13_S_contig8321.19677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8321:1682..2421+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCTCCGGAAAGGTTGAGGGGGGTCCCGCGGAGACGCAGCACAAG
GGCTGGGCCCCGACCGCCAGCCCCTGCATCTTCGGCTACCACAGCACGGA
CGCGGGTACGATCTCACCCAGAGATGGCGGCGATCGCCGTGGCCGTGACC
TGTCCGTCAGCGACACCCTCGACGGTGACGAGGAGCCACCCGCCGGTCCT
TCGAAGGTCCCGCCCTTGCGCGGCTGGGAGTGTTCGTCCTCCTCGCCGTC
CCCGCCGCCGCTACCGAGTCGACCGCTGGAGCCGAGCGCCGACGGCCGCC
ACGGCGGGCTCGAACGGCCGTCGCACGTGTGGCCAAGGCCTGTCGATGCT
GCCAAGGCCGGCCGGAAACTGGACCTTGACGATGACTCAGACGGCGAGTC
TATGCCGCAAATGGTCCCGCTCCACCGGTTGCCGAGCATCGGCACCGGTA
GCGGCGACGGGCCGGCTGCGGCGGGGGCGCGGTCGCGCCAGAGCCTTTGT
GCGGCGACGAAGAAGAACGGGCAGTCCGCGGCGGCGGCGCATAAGCCCAA
GAAGAAGCTGGGGGGCAAGGCGGAGTACGCCATGCTGCCCTTGGCCAGTG
CCGAGTAGTCGTGGCGCCATTGTCCTTCGGGCTAACATCTGTTACTGTCC
CATCCATCCATCCTGGATGAACACGCTCTCACGCGTGAAGCACGCCCGCG
TGCGCCGTTGGTGCTCCGACGCGAAGAAACTTGATCTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8321:1682..2421+

>mRNA_Ecto-sp13_S_contig8321.19677.1 ID=mRNA_Ecto-sp13_S_contig8321.19677.1|Name=mRNA_Ecto-sp13_S_contig8321.19677.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8321:1682..2421+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGCTCCGGAAAGGTTGAGGGGGGTCCCGCGGAGACGCAGCACAAG
GGCTGGGCCCCGACCGCCAGCCCCTGCATCTTCGGCTACCACAGCACGGA
CGCGGGTACGATCTCACCCAGAGATGGCGGCGATCGCCGTGGCCGTGACC
TGTCCGTCAGCGACACCCTCGACGGTGACGAGGAGCCACCCGCCGGTCCT
TCGAAGGTCCCGCCCTTGCGCGGCTGGGAGTGTTCGTCCTCCTCGCCGTC
CCCGCCGCCGCTACCGAGTCGACCGCTGGAGCCGAGCGCCGACGGCCGCC
ACGGCGGGCTCGAACGGCCGTCGCACGTGTGGCCAAGGCCTGTCGATGCT
GCCAAGGCCGGCCGGAAACTGGACCTTGACGATGACTCAGACGGCGAGTC
TATGCCGCAAATGGTCCCGCTCCACCGGTTGCCGAGCATCGGCACCGGTA
GCGGCGACGGGCCGGCTGCGGCGGGGGCGCGGTCGCGCCAGAGCCTTTGT
GCGGCGACGAAGAAGAACGGGCAGTCCGCGGCGGCGGCGCATAAGCCCAA
GAAGAAGCTGGGGGGCAAGGCGGAGTACGCCATGCTGCCCTTGGCCAGTG
CCGAGTAGTCGTGGCGCCATTGTCCTTCGGGCTAACATCTGTTACTGTCC
CATCCATCCATCCTGGATGAACACGCTCTCACGCGTGAAGCACGCCCGCG
TGCGCCGTTGGTGCTCCGACGCGAAGAAACTTGATCTG
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