prot_Ecto-sp13_S_contig8311.19665.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8311.19665.1
Unique Nameprot_Ecto-sp13_S_contig8311.19665.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length254
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8311.19665.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 2.260e-113
Identity = 222/247 (89.88%), Postives = 229/247 (92.71%), Query Frame = 0 
Query:    1 MVSVAFSSAFHDASAGCDSLNFHTFELALKDVDGDTSDAADPAEERAGLAEPSKLARRGSVFMVATSPATPEAAADGLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAAAMYRQTSAHRLFRAAPPEPKRQQWKVCQETPLAGGDVAAASAAAGPMCGEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHSNNKNDRFFPKRIVGRDDREVLDGSDVLQQISNLTSTEPSNEREVSVQGTK 247
            MVSVAFSSAFHDASAG DSLNFHTFELALKDVDGDTSDAADPAE+RAGLAEPSK ARRGSVFMVAT PATPEAAAD LEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXX     MYRQTSAHRLFRAAPPEPKRQQWKVC++TPLAG + A+ SAAA PM GEDSRLRSSSWHAXXXXXXXXXXXXGLEYGH+NNKNDRFFPKRIV RDDREVLDGSDVLQQISNLTSTEPSNEREV V G +
Sbjct:    1 MVSVAFSSAFHDASAGRDSLNFHTFELALKDVDGDTSDAADPAEQRAGLAEPSKPARRGSVFMVATPPATPEAAADSLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYRQTSAHRLFRAAPPEPKRQQWKVCEKTPLAGDETASTSAAAAPMSGEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHNNNKNDRFFPKRIVCRDDREVLDGSDVLQQISNLTSTEPSNEREVFVGGLR 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8311.19665.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 3.890e-104
Identity = 203/247 (82.19%), Postives = 209/247 (84.62%), Query Frame = 0 
Query:    1 MVSVAFSSAFHDASAGCDSLNFHTFELALKDVDGDTSDAADPAEERAGLAEPSKLARRGSVFMVATSPATPEAAADGLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPAAAMYRQTSAHRLFRAAPPEPKRQQWKVCQETPLAGGDVAAASAAAGPMCGEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHSNNKNDRFFPKRIVGRDDREVLDGSDVLQQISNLTSTEPSNEREVSVQGTK 247
            MVS++FSSAFHD S G DSLNFHTFE ALKD+DGDTSDAADPAEERAGLAEPSK AR GSVF VAT PATPEAAAD LEGEQ   XXXXXXXXXXXXXXXXXXXXXXXXXX  KPA AMYRQ SAHRLFRAAPPEPKRQQWKVC+ETPLAG D  AASAAA PMCGEDSRLRS SWHA            GLEY HSN KNDRFFPKRIVGRDDREVLDGSDVLQQISN+TSTEPSNEREV V G +
Sbjct:    1 MVSLSFSSAFHDVSVGRDSLNFHTFERALKDMDGDTSDAADPAEERAGLAEPSKPARHGSVFAVATPPATPEAAADRLEGEQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKPAVAMYRQMSAHRLFRAAPPEPKRQQWKVCEETPLAGDDTVAASAAASPMCGEDSRLRSLSWHASDCSRRSPPPPPGLEYSHSNRKNDRFFPKRIVGRDDREVLDGSDVLQQISNVTSTEPSNEREVFVGGLR 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8311.19665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM19_ECTSI2.260e-11389.88RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
A0A6H5JCH7_9PHAE3.890e-10482.19RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..253
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8311contigEcto-sp13_S_contig8311:1172..2240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8311.19665.1mRNA_Ecto-sp13_S_contig8311.19665.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8311 982..2478 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8311.19665.1 ID=prot_Ecto-sp13_S_contig8311.19665.1|Name=mRNA_Ecto-sp13_S_contig8311.19665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MVSVAFSSAFHDASAGCDSLNFHTFELALKDVDGDTSDAADPAEERAGLA
EPSKLARRGSVFMVATSPATPEAAADGLEGEQRIHHHHQQQQQQQQQQAE
PPAPAPASSSSAGKPAAAMYRQTSAHRLFRAAPPEPKRQQWKVCQETPLA
GGDVAAASAAAGPMCGEDSRLRSSSWHASDSSRRSPPPPPGLEYGHSNNK
NDRFFPKRIVGRDDREVLDGSDVLQQISNLTSTEPSNEREVSVQGTKGQL
AFP*
back to top