mRNA_Ecto-sp13_S_contig82485.19597.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82485.19597.1
Unique NamemRNA_Ecto-sp13_S_contig82485.19597.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82485.19597.1 vs. uniprot
Match: D8LRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 7.070e-34
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 IKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLDAGLEGLRYEEHQRLEAYF 204
            +KGIVFDVSDDEAYNHEGALAGCAGHDASRVI A AG R G GDGGGKLDAGLEGLRYEEHQRLEAYF
Sbjct:   15 VKGIVFDVSDDEAYNHEGALAGCAGHDASRVIGASAGSRRGYGDGGGKLDAGLEGLRYEEHQRLEAYF 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82485.19597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRP3_ECTSI7.070e-3491.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82485contigEcto-sp13_S_contig82485:48..251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464094.7636352-CDS-Ecto-sp13_S_contig82485:47..2511681464094.7636352-CDS-Ecto-sp13_S_contig82485:47..251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82485 48..251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82485.19597.1prot_Ecto-sp13_S_contig82485.19597.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82485 48..251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82485.19597.1

>prot_Ecto-sp13_S_contig82485.19597.1 ID=prot_Ecto-sp13_S_contig82485.19597.1|Name=mRNA_Ecto-sp13_S_contig82485.19597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
IKGIVFDVSDDEAYNHEGALAGCAGHDASRVIAAPAGGRLGNGDGGGKLD
AGLEGLRYEEHQRLEAYF
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mRNA from alignment at Ecto-sp13_S_contig82485:48..251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82485.19597.1 ID=mRNA_Ecto-sp13_S_contig82485.19597.1|Name=mRNA_Ecto-sp13_S_contig82485.19597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82485:48..251+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAGGGCATCGTATTCGATGTATCCGATGACGAGGCCTACAACCACGA
AGGGGCACTCGCTGGATGCGCGGGACACGACGCGAGCCGCGTGATTGCAG
CGCCTGCGGGTGGTAGGCTTGGTAATGGTGACGGTGGTGGCAAGCTTGAT
GCTGGGTTGGAAGGTTTACGGTATGAGGAGCATCAGAGACTGGAGGCTTA
CTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82485:48..251+

>mRNA_Ecto-sp13_S_contig82485.19597.1 ID=mRNA_Ecto-sp13_S_contig82485.19597.1|Name=mRNA_Ecto-sp13_S_contig82485.19597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82485:48..251+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAGGGCATCGTATTCGATGTATCCGATGACGAGGCCTACAACCACGA
AGGGGCACTCGCTGGATGCGCGGGACACGACGCGAGCCGCGTGATTGCAG
CGCCTGCGGGTGGTAGGCTTGGTAATGGTGACGGTGGTGGCAAGCTTGAT
GCTGGGTTGGAAGGTTTACGGTATGAGGAGCATCAGAGACTGGAGGCTTA
CTTT
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