mRNA_Ecto-sp13_S_contig8243.19596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8243.19596.1 vs. uniprot
Match: A0A6H5KV23_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV23_9PHAE) HSP 1 Score: 1976 bits (5119), Expect = 0.000e+0 Identity = 1038/1157 (89.71%), Postives = 1078/1157 (93.17%), Query Frame = 1
Query: 133 QKLPTFRAGGVTSRIDLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWVGSTERGCVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHDDADGDLHYIDLGRVEVPLETVLTEGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKLAVGFFVGSDCVLLRDEDNDTLGQRLGSAARFEHHMKRFRGCRRSDGCVRAASTSPPRRTPANSQELTVRGGTVVVRPKSAPEATTLTCPTHLQKRPFELKPVQPRNPSANFQMTGATQAESEDWAETPTSNVMLAETAPTGEQRPRWRDTYGVAAAPDEAKAILSSVGSERAELNETWGGMPATSSHIPALTKPSPKLSRLAANATHYTTDRGKSPGLLPMDWDRQEGATVRAHKWQRKLLESMQRLETRSTEGVAYGELRAMVREASSVQVGQVVTAARGVGTACSLAARRYTLRLLAWLCWDQPRAAGRHHASIVSYVLDRVRDDETASLHGELALCIGAVMLSALRDGTVDQYMVQIRRLLRLVGEQRTSVRESAGVCCVASVLPPSPRVPVEVETGLRSIHDVRLTIGQAAERGGIANPMPKEAVLLPGGRAVIELADNAAAASFFNGLSVTAAGLPANWNVCPFPEDFCTGVSLAQASHHVRLTVNSEEILASLLEALGNGRSEATRAQLFNAMAAMARSCVTHGDTELQPETGTPKMVMATAPGVVRGISATFKKGLPAVARAVLDVLNSPVRRAYTWKERQAALEVIASLAVLVDLRGVQGPLGEHRAKFVQGATRAKHDSVAAVREVARKSLAALEATDAEEGTRKHRPHVFPEASGGPHTRGGTGVGVSSVGMRQRVRPEKTGESKVVRKHIVIPKTDGVVPEVWRAGECMNESLQVKLKGNQDSREMDTRDRWEREAEVAEGEKLTADRTSAVSSVESYPSSSRGRDKQDTPQSSEKSPRPSSSASEGCGRDCRRGQTQAVNARGPREDDPSSGDLERKGNMTSEESLPAPNKNDGEPSKQEEKENGAPLQQRGIPMETFFARPFRQPDQTAPASTVQSI--AAQGMASPQKKDLETPLKETSRARGTTLVQRPVRDGVQVDTVRLLRQLDDKTNGIVSVLDGLDRRLV 3597
QKLPTFRAGGVTSRIDLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWV STE G VDLKHDRRVQSTEVRKHTVDPVWDAEFVFPL+VQSVEDVLSGRINILVRDHDDADGDLHYIDLGRVEVPLETVLT+GNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKLAVGFFVGSDCVLLRDED DTLGQ L +AARFEHHMKR RGCRRSDGC RAAS SPPRRTPANSQ LTVRGGTVVVRPKSAPEATTLTCP HLQ+RPFELKPVQPRNPSA+FQMTGATQ ES+DWAETPT+N++LAET PT EQRPRWRDTYGVAAAPDEAKA LSSV SERAELN++WGG+PATSS +PALTKPSPKL RLAANATH TT RGKSPGL PM WD+ EGATVRAH+WQRKLLES+QRLETRSTEGVAYGELRAMVREASSVQVGQVV+AARGVGTACSLAARRYTLRLLAWLCWDQPRAA RHHASIVSYVLDR+RDDETASLH ELALCIGAVMLSALRDGTVDQYMVQ RRLLRLVGEQR VRESAGVCCVASVLPPSPRVPVEVETGL SIHDVRL IGQAAERGGIANPMPKEAVLLPGGRAV+ELAD AAAASFF+ LSVTAAGLPANW+VCPFPEDFCTGV+LAQASHH RLTVNSEEILASLLEALGNGRSEATRAQLFNAMAAMARSCV HGDTELQ ET TPKMV+ATAPGV RGISATFKKGLPAVARAVL+VLN PVRRAYTWKER+AALEVIASLAVLVDLRGV+GPLG+HRAKFVQGATRAKHDSVAAVREVARKSLAALEATDAEEGTRKHRPHVFP+AS GPHTRGGTGVGVSSVGMRQRV PEK GESKVVRKHIVIPKTDGVV E WRAGEC E QVKL+GNQDSRE+D+RDR +REAEVA +KLTA RTS VSSVESYPSSSRGRDKQ+TPQ SE+SPRPSSSASEGCGRD R T VN R PR+DDPS+GDLERKGNMTSEE LP PN N GE S+QEEKENGAPL+QRG PMETFFARPF QP QTAPASTVQSI A Q MA P+KK LETPL ETSRAR TTLVQR VRDGVQVDTVRLLR LDDKTNGIVSVLDGLDRRLV
Sbjct: 19 QKLPTFRAGGVTSRIDLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWVSSTESGYVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLDVQSVEDVLSGRINILVRDHDDADGDLHYIDLGRVEVPLETVLTQGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKLAVGFFVGSDCVLLRDEDKDTLGQGLCTAARFEHHMKRLRGCRRSDGCGRAASMSPPRRTPANSQGLTVRGGTVVVRPKSAPEATTLTCPMHLQQRPFELKPVQPRNPSADFQMTGATQTESKDWAETPTTNIVLAETPPTAEQRPRWRDTYGVAAAPDEAKATLSSVESERAELNQSWGGLPATSSRVPALTKPSPKLFRLAANATHETTGRGKSPGL-PMGWDQHEGATVRAHRWQRKLLESIQRLETRSTEGVAYGELRAMVREASSVQVGQVVSAARGVGTACSLAARRYTLRLLAWLCWDQPRAASRHHASIVSYVLDRIRDDETASLHAELALCIGAVMLSALRDGTVDQYMVQFRRLLRLVGEQRKLVRESAGVCCVASVLPPSPRVPVEVETGLCSIHDVRLAIGQAAERGGIANPMPKEAVLLPGGRAVVELADAAAAASFFDRLSVTAAGLPANWSVCPFPEDFCTGVNLAQASHHARLTVNSEEILASLLEALGNGRSEATRAQLFNAMAAMARSCVAHGDTELQHETVTPKMVVATAPGVARGISATFKKGLPAVARAVLEVLNCPVRRAYTWKEREAALEVIASLAVLVDLRGVEGPLGDHRAKFVQGATRAKHDSVAAVREVARKSLAALEATDAEEGTRKHRPHVFPQASVGPHTRGGTGVGVSSVGMRQRVHPEKRGESKVVRKHIVIPKTDGVVLEGWRAGECRTEPPQVKLEGNQDSREIDSRDRRQREAEVAGEKKLTAGRTSTVSSVESYPSSSRGRDKQETPQLSERSPRPSSSASEGCGRDHRSEPTHTVNTRNPRQDDPSNGDLERKGNMTSEEGLPTPNNNGGEQSQQEEKENGAPLRQRGRPMETFFARPFPQPGQTAPASTVQSIEVAVQRMAPPEKKKLETPLNETSRARATTLVQRSVRDGVQVDTVRLLRHLDDKTNGIVSVLDGLDRRLV 1174
BLAST of mRNA_Ecto-sp13_S_contig8243.19596.1 vs. uniprot
Match: D7FNT0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT0_ECTSI) HSP 1 Score: 1930 bits (5000), Expect = 0.000e+0 Identity = 1018/1159 (87.83%), Postives = 1059/1159 (91.37%), Query Frame = 1
Query: 127 MNQKLPTFRAGGVTSRIDLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWVGSTERGCVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHDDADGDLHYIDLGRVEVPLETVLTEGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKLAVGFFVGSDCVLLRDEDNDTLGQRLGSAARFEHHMKRFRGCRRSDGCVRAASTSPPRRTPANSQELTVRGGTVVVRPKSAPEATTLTCPTHLQKRPFELKPVQPRNPSANFQMTGATQAESEDWAETPTSNVMLAETAPTGEQRPRWRDTYGVAAAPDEAKAILSSVGSERAELNETWGGMPATSSHIPALTKPSPKLSRLAANATHYTTDRGKSPGLLPMDWDRQEGATVRAHKWQRKLLESMQRLETRSTEGVAYGELRAMVREASSVQVGQVVTAARGVGTACSLAARRYTLRLLAWLCWDQPRAAGRHHASIVSYVLDRVRDDETASLHGELALCIGAVMLSALRDGTVDQYMVQIRRLLRLVGEQRTSVRESAGVCCVASVLPPSPRVPVEVETGLRSIHDVRLTIGQAAERGGIANPMPKEAVLLPGGRAVIELADNAAAASFFNGLSVTAAGLPANWNVCPFPEDFCTGVSLAQASHHVRLTVNSEEILASLLEALGNGRSEATRAQLFNAMAAMARSCVTHGDTELQPETGTPKMVMATAPGVVRGISATFKKGLPAVARAVLDVLNSPVRRAYTWKERQAALEVIASLAVLVDLRGVQGPLGEHRAKFVQGATRAKHDSVAAVREVARKSLAALEATDAEEGTRKHRPHVFPEASGGPHTRGGTGVGVSSVGMRQRVRPEKTGESKVVRKHIVIPKTDGVVPEVWRAGECMNESLQVKLKGNQDSREMDTRDRWEREAEVAEGEKLTADRTSAVSSVESYPSSSRGRDKQDTPQSSEKSPRPSSSASEGCGRDCRRGQTQAVNARGPREDDPSSGDLERKGNMTSEESLPAPNKNDGEPSKQEEKENGAPLQQRGIPMETFFARPFRQPDQTAPASTVQSI--AAQGMASPQKKDLETPLKETSRARGTTLVQRPVRDGVQVDTVRLLRQLDDKTNGIVSVLDGLDRRLV 3597
MNQKLPT RAGGVTSR DLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDL TGTSDP+TFLWV STE G VDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHDDA+GDLHYIDLGRVEVPLETVLTEGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALK+AVGFFVGSDCVLLRDEDNDTLGQ LGSAARFEHHMK FRGCRRSDGC RAASTSPPRRTPANSQELTVRGGTVVVRPKSAPEATTLTCP HLQKRPFELKPVQPRNPSA FQMTGATQAES+DWAETPTSN++LAETAPTGE+RPRWRDTYGVAAAPDEAKA LSSVGSERAE N+T GG+PAT S +PALTKPSPKLSRLAANATH T+RGKSPGL PM WD+QEGATVRAH+WQRKLLESMQRLETRSTEGVAYGELRAMVREASSVQVGQVVTAARGVGTACSLAARRYTLRLL+WLCWDQPRAA RHHASIVSYVLDR+RDDETASLH ELALCIGAV+LSALRDGTVDQYMVQIRRL+RLVGEQR SVRESAGVCCVASVLPPSPRVPVEVETGLRSIHDVRL IGQAAERGGIANPMPKEA+LLPGGRAVIELAD AAAASFF+ LSVTAAGLPANWNVCPFPEDFCTGV+LAQASHH RLTVNSEEILASLLEALGNGRSEATRAQLFNAMAAMARSCVTHGD+ELQPETGTPKMV+ATAPGVVRGISATFKKGLPAVARAVL+VLN P+RRAYTW ER+AA EVIASLAVLVDLRGV+GPLGEHRAKFVQGAT AKHDSVAAVRE ARKSLAALEATDAEEGTRK+RP V P+AS GPHTRG G G+S GMRQR+RPEKTGESK VRKH+ PK DGVV E W+AGECM E QV L+ NQ+S EMD+RDR +REAEV +KLTA RTS VSSVES PSSSRG DKQDTP SSSASEGCG D RRG T AVN R P E DPSSGDLERKGNMTSEE LP NK DGEP KQ EKENGAPLQQRG PMET A+P +P QTAPASTVQSI A QGMA P+KKDLET ETSRA TTLVQR VRDGVQVDTVRLLR LDDKTNGIVS+LDGLDRRLV
Sbjct: 1 MNQKLPTLRAGGVTSRADLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLQTGTSDPITFLWVSSTESGYVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHDDANGDLHYIDLGRVEVPLETVLTEGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKIAVGFFVGSDCVLLRDEDNDTLGQGLGSAARFEHHMKSFRGCRRSDGCGRAASTSPPRRTPANSQELTVRGGTVVVRPKSAPEATTLTCPIHLQKRPFELKPVQPRNPSAVFQMTGATQAESKDWAETPTSNIILAETAPTGEKRPRWRDTYGVAAAPDEAKATLSSVGSERAEFNQTCGGLPATFSLVPALTKPSPKLSRLAANATHENTERGKSPGL-PMGWDQQEGATVRAHRWQRKLLESMQRLETRSTEGVAYGELRAMVREASSVQVGQVVTAARGVGTACSLAARRYTLRLLSWLCWDQPRAASRHHASIVSYVLDRIRDDETASLHVELALCIGAVVLSALRDGTVDQYMVQIRRLIRLVGEQRKSVRESAGVCCVASVLPPSPRVPVEVETGLRSIHDVRLAIGQAAERGGIANPMPKEAILLPGGRAVIELADAAAAASFFDRLSVTAAGLPANWNVCPFPEDFCTGVNLAQASHHARLTVNSEEILASLLEALGNGRSEATRAQLFNAMAAMARSCVTHGDSELQPETGTPKMVVATAPGVVRGISATFKKGLPAVARAVLEVLNCPIRRAYTWNEREAAFEVIASLAVLVDLRGVEGPLGEHRAKFVQGATGAKHDSVAAVREAARKSLAALEATDAEEGTRKNRPRVLPQASVGPHTRGEKGAGMSLAGMRQRLRPEKTGESKAVRKHLANPKIDGVVVEDWKAGECMTELPQVNLESNQESSEMDSRDRRQREAEVPGEKKLTAGRTSTVSSVESCPSSSRGNDKQDTP---------SSSASEGCGSDRRRGLTHAVNTRNPGEHDPSSGDLERKGNMTSEEDLPTLNKKDGEPGKQAEKENGAPLQQRGTPMETLVAQPIPRPIQTAPASTVQSIEVAVQGMAPPEKKDLETLSNETSRAGATTLVQRHVRDGVQVDTVRLLRHLDDKTNGIVSILDGLDRRLV 1149
BLAST of mRNA_Ecto-sp13_S_contig8243.19596.1 vs. uniprot
Match: A0A482SF76_9ARCH (C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF76_9ARCH) HSP 1 Score: 116 bits (290), Expect = 4.780e-23 Identity = 73/196 (37.24%), Postives = 110/196 (56.12%), Query Frame = 1
Query: 199 KSALAPSYFSHNHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWVG----------STERGCVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHD-DADGDLHYIDLGRVEVPLETVLTEGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKLAVGFFVGSD 753
K+ L S +HFSS AG K +R+ V+++E K LL SD+ TG SDPV F+W G +TE G + +R + ST V T DPVW+ + VFPL++ V + R I VRD D D++G++ Y DLG +E P++ +L G M ++ +V+ A WY L++ GM+K G++KL + S+
Sbjct: 3 KTGLKVKDVSKDHFSSGSAGNGP---KFSRLVVRIVEAKQLLASDVETGKSDPVCFVWCGYNDEKPNVEQATEHGDGGEQQNRWI-STSVCNTTTDPVWNEDIVFPLDISDVMSLSLMRCLIFVRDEDRDSEGNITYDDLGMLEFPMQDLLIAGRAMQNS-IVRASA-WYDLKKSPGMRKVDGSIKLTISLIFASE 192
BLAST of mRNA_Ecto-sp13_S_contig8243.19596.1 vs. uniprot
Match: A0A7S3M7F1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7F1_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.840e-17 Identity = 60/200 (30.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query: 232 NHFSSPLAGTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWVGSTERGCVDLKHD---RRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHDDADGD---LHYIDLGRVEVPLETVLTEGNIMAHTQLVQLPARWYPLQRCRGMKKSRGALKLAVGFFVGSDCVLLRDEDNDTLGQRLGSAA 813
+HFSS + ++ +R+ ++ LEGK LL SD+ TG SDPV+F+W G + + D + T V T++P+W+ + +FPL++ ++ + I VRD D G+ Y +LG +E+P + + T+G ++ + + WY L + GM++ G +KL + + EDND + ++L SAA
Sbjct: 48 DHFSSGIVQSEPHF---SRLVIRFLEGKELLASDIETGKSDPVSFVWCGPINDTPILEEADLPESGILRTSVCPTTINPIWNEDVIFPLDITDIKSFTEMKCLIYVRDEDLGAGENGMTTYDELGMLELPFKDIYTKGKAFKNS--IVISGTWYTLAKSPGMRRVDGQVKLTISL-------IFAPEDNDVILKQLPSAA 235 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8243.19596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8243.19596.1 >prot_Ecto-sp13_S_contig8243.19596.1 ID=prot_Ecto-sp13_S_contig8243.19596.1|Name=mRNA_Ecto-sp13_S_contig8243.19596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1157bp MNQKLPTFRAGGVTSRIDLVRGDHKSALAPSYFSHNHFSSPLAGTDDPLLback to top mRNA from alignment at Ecto-sp13_S_contig8243:1308..6984+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8243.19596.1 ID=mRNA_Ecto-sp13_S_contig8243.19596.1|Name=mRNA_Ecto-sp13_S_contig8243.19596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5677bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8243:1308..6984+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8243:1308..6984+ >mRNA_Ecto-sp13_S_contig8243.19596.1 ID=mRNA_Ecto-sp13_S_contig8243.19596.1|Name=mRNA_Ecto-sp13_S_contig8243.19596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8243:1308..6984+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |