mRNA_Ecto-sp13_S_contig8231.19588.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8231.19588.1
Unique NamemRNA_Ecto-sp13_S_contig8231.19588.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: D7G0X2_ECTSI (HDAC_interact domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI)

HSP 1 Score: 531 bits (1367), Expect = 4.170e-174
Identity = 359/406 (88.42%), Postives = 362/406 (89.16%), Query Frame = 1 
Query:    1 SQQGEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRTALLAKEEEPKPLDRAALADAADAAAKEAAKXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKAXXXEESKDESNQDGTNDASXXXXXXXXXXKVKAETQNGGGKAGEEGARQAAVDKMVADHEAQVKAAKQAKAERYR 1218
            SQQGEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFK           CEDERFELDMVIEAGSSAI+LLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQR TYYKSLDRRSID+KNEDKKAHSARVLVADITHRRTALLAKEEEPK LDRAALADAADAAAKEAAK    XXXXXXXXXX  K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXX                XXXXXXXXXX VKAE QNGGGKA EEGARQAAVDKMVADH+AQVKAAKQAKAER R
Sbjct:  308 SQQGEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFK-----------CEDERFELDMVIEAGSSAISLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRSTYYKSLDRRSIDVKNEDKKAHSARVLVADITHRRTALLAKEEEPKSLDRAALADAADAAAKEAAKACSSXXXXXXXXXXV-KGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKAEMQNGGGKAREEGARQAAVDKMVADHDAQVKAAKQAKAERER 701
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A6H5KFU2_9PHAE (Sin3a_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU2_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 1.040e-115
Identity = 260/298 (87.25%), Postives = 261/298 (87.58%), Query Frame = 1 
Query:  334 MVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRTALLAKEEEPKPLDRAALADAADAAAKEAAKXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKAXXXEESKDESNQDGTNDASXXXXXXXXXXKVKAETQNGGGKAGEEG---ARQAAVDKMVADHEAQVKAAKQAKAERYR 1218
            MVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQR TYYKSLDRRSIDLKNEDKKAHSARVLVADITHRR ALLAKEEEPKPLDRAALADAADAAAKEAAK   XX      XXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXEE KDESNQ+GTNDAS          KVKAE QNG GKAGEEG   ARQAAVDKMVADHEAQV AAKQAKAER R
Sbjct:    1 MVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRSTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRAALLAKEEEPKPLDRAALADAADAAAKEAAKASNXXSCGGDEXXXVTGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXEEIKDESNQEGTNDASSSSSPVKQQQKVKAEIQNGDGKAGEEGEEGARQAAVDKMVADHEAQVMAAKQAKAERER 297
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A7S3XWL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWL9_HETAK)

HSP 1 Score: 231 bits (590), Expect = 5.690e-69
Identity = 126/252 (50.00%), Postives = 163/252 (64.68%), Query Frame = 1 
Query:    1 SQQGEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEIKCIDKTAGAR-----YQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRR 741
            S +G  +++  ++W + PL+E+D     K  PSYR LPK++    CSER+ LE  VLND WVSVPVGSE    + +FKHMRKNQ+E+ LF+           CEDERFE+DMVI++ ++A   LEP+  E++ +    G R      Q+KLD+R LS V L AI RIYGDHGAEILELL+KNP   +PVIL RL+QKD EWR +R+ LNK W  VQ   ++KSLD RS   K  DKK  S R LV ++  RR
Sbjct:   53 SLKGTADQLGGDLWYSMPLSEIDFGQCRKCTPSYRALPKDYLRPPCSERSLLEHRVLNDTWVSVPVGSE---DNYSFKHMRKNQYEEALFR-----------CEDERFEVDMVIDSNAAAAAALEPLAREVRALQAAEGTRGGERRLQYKLDKRALSVVHLNAIIRIYGDHGAEILELLKKNPAGAIPVILKRLKQKDAEWRKARQDLNKHWKEVQEKNWHKSLDHRSFYFKQADKKQCSQRALVQEVKERR 290
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A7S1UGB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGB0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.890e-59
Identity = 114/252 (45.24%), Postives = 159/252 (63.10%), Query Frame = 1 
Query:   10 GEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEIKCI-------DKTAGAR-----YQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADI 729
            G+   +A++ W    ++++D T   +  PSYR LP+ FP   CS R++ +  VLND WVS+PVGSE    + +FKHMR+N +E+ LFK           CEDERFE+DMVI++ +S I +LEP+  EI+ +        +TAG       +Q+KLD R LS V + AI+RIYG+HGAEI ELLRKNP   VPV+L RL+QKD+EWR +R+ L + W  +    ++KSLD RS   + +DK+A S R L  DI
Sbjct:   89 GKAGGLAAQPWYGMAVSDVDFTQCRRCTPSYRALPQYFPRPPCSMRSTDDGKVLNDQWVSLPVGSE---ENYSFKHMRRNTYEETLFK-----------CEDERFEMDMVIDSNASTIRVLEPLAAEIEALRVAEGDGGETAGIAGAVPAFQYKLDPRTLSRVHINAISRIYGEHGAEIQELLRKNPAGAVPVVLNRLKQKDIEWRRARQELARQWKGLMEANFHKSLDHRSFYFRTQDKRAISIRGLTQDI 326
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 217 bits (553), Expect = 9.590e-59
Identity = 130/288 (45.14%), Postives = 170/288 (59.03%), Query Frame = 1 
Query:   25 IASEMWTNTPLNELDLTLSEKGGPSYRHLPK--------------------NFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEI-KCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQK--------------------DVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRTALLAKEE 765
            + +++W +TPL E+D +   K  PSYR LPK                    ++P  SCSER+ +E SVLND WVSVPVGSE   +   FKHMRKNQ+E+ LF+           CEDERFE+DMVI++ +S I LLEP+ EEI +     + A YQFKLD+R L  V L AITRIYGD GAE+LELLRKNP   VP+IL RL+QK                    D EWR +R  L++ W ++   TY+KSLDRRS   K+ D++A+  R L+A+I     A  A+E+
Sbjct:  632 LTTDVWYSTPLAEIDFSQCRKCTPSYRALPKGASQFGWAQFCGTFRASQALDYPRPSCSERSYMEDSVLNDTWVSVPVGSEDSSN---FKHMRKNQYEEALFR-----------CEDERFEIDMVIDSTTSTIKLLEPLAEEIAQLAQHGSNAHYQFKLDKRTLGVVHLNAITRIYGDRGAEVLELLRKNPAGAVPLILKRLKQKXXXXXXXXXXXXXXXXXXXKDTEWRQNRSSLDRQWRDLLERTYHKSLDRRSFYFKSADRRAYGHRALLAEIRDLAAARAAEED 905
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A7S3HNY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNY2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.880e-58
Identity = 129/291 (44.33%), Postives = 170/291 (58.42%), Query Frame = 1 
Query:   13 EVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEI---KCID--------------KTAGA-------RYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRTALLAKEEEPKPLDRAALADAADA 813
            E  E  S++W   PL+E+D     K  PSYR LP+++P   C+ER+  E  VLND WVS+P+GSE      +FKHMRKNQ+E+ LFK           CEDERFE+DMVI++    I +LEP+ EEI   K I+              +T G        R+ F+L++R LS + L +I RIYGDHG EILELLR+NP  T+PV+L RL+QKD+EWR +R  LNK W  V    + +S D RS   +  DKK  S R LV +IT      LA   +  P   AA+A+AA+A
Sbjct:  184 EYEEHKSDVWYAVPLSEIDFAQCRKCTPSYRALPRDYPKAKCTERSEEEAKVLNDQWVSIPIGSE---ESYSFKHMRKNQYEEALFK-----------CEDERFEIDMVIDSNMCTIRVLEPLAEEIATLKSIETIPRGTLHGDAATGQTQGGASTSIAPRFSFQLEKRHLSTIHLNSIARIYGDHGEEILELLRRNPAGTIPVLLKRLKQKDLEWRKARTELNKHWREVVEKNHTRSFDHRSFYFRQHDKKYLSTRQLVTEIT-----TLANPAQATP---AAIAEAANA 452
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A7S3MGY4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGY4_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.090e-56
Identity = 129/291 (44.33%), Postives = 170/291 (58.42%), Query Frame = 1 
Query:   13 EVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEI---KCID--------------KTAGA-------RYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRTALLAKEEEPKPLDRAALADAADA 813
            E  E  S++W   PL+E+D     K  PSYR LP+++P   C+ER+  E  VLND WVS+P+GSE      +FKHMRKNQ+E+ LFK           CEDERFE+DMVI++    I +LEP+ EEI   K I+              +T G        R+ F+L++R LS + L +I RIYGDHG EILELLR+NP  T+PV+L RL+QKD+EWR +R  LNK W  V    + +S D RS   +  DKK  S R LV +IT      LA   +  P   AA+A+AA+A
Sbjct:  285 EYEEHKSDVWYAVPLSEIDFAQCRKCTPSYRALPRDYPKAKCTERSEEEAKVLNDQWVSIPIGSE---ESYSFKHMRKNQYEEALFK-----------CEDERFEIDMVIDSNMCTIRVLEPLAEEIATLKSIETIPRGTLHGDAATGQTQGGASTSIAPRFSFQLEKRHLSTIHLNSIARIYGDHGEEILELLRRNPAGTIPVLLKRLKQKDLEWRKARTELNKHWREVVEKNHTRSFDHRSFYFRQHDKKYLSTRQLVTEIT-----TLANPAQATP---AAIAEAANA 553
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A067BV90_SAPPC (HDAC_interact domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BV90_SAPPC)

HSP 1 Score: 209 bits (532), Expect = 2.380e-56
Identity = 116/238 (48.74%), Postives = 154/238 (64.71%), Query Frame = 1 
Query:   10 GEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVA 723
            GEV +   E+W   PL E DL+   +  PSYR LP ++P+   S R+ +E++V ND WVSVP GSE    D +FK+MRKNQ+E+ LFK           CEDERFE+DMVI+A +S I +L P+ +EI+ +  T+   +Q+ LD+  L    L AITRIYG+ G +ILELLRK+P   +PVIL RL QKD EWR +R+ LNK W +V    Y+KSLD  S   K +DKKA SA+ L+A
Sbjct:  261 GEVKD-QHEIWPFIPLAETDLSQCRRATPSYRALPSSYPIPPSSSRSKMERAVCNDAWVSVPTGSE----DFSFKNMRKNQYEEALFK-----------CEDERFEIDMVIDANASTIAILTPLAKEIETLSATSPTGWQYVLDKGALRVTHLNAITRIYGEAGHQILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHKSLDHSSFYFKQKDKKATSAKALLA 482
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: A0A1V9ZFI4_9STRA (Paired amphipathic helix protein Sin3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFI4_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.050e-56
Identity = 113/230 (49.13%), Postives = 149/230 (64.78%), Query Frame = 1 
Query:   34 EMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVA 723
            E+W   PL E DL+   +  PSYR LP ++P+   S R+ +E+SV ND WVSVP GSE    D +FK+MRKNQ+E+ LFK           CEDERFE+DMVI+A +S I +L P+ +EI+ +  T+   +Q+ LD+  L    L AITRIYG+ G +ILELLRK+P   +PVIL RL+QKD EWR +R+ LNK W  V    Y+KSLD  S   K +DKKA S +V +A
Sbjct:  619 EIWPFIPLAETDLSQCRRATPSYRALPSSYPIPPSSSRSKMERSVCNDAWVSVPTGSE----DFSFKNMRKNQYEEALFK-----------CEDERFEIDMVIDANASTIAILTPLAKEIETLQATSPTGWQYVLDKGALRVTHLNAITRIYGESGHQILELLRKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKEVNEKNYHKSLDHSSFYFKQKDKKATSTKVFLA 833
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BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Match: T0RRZ2_SAPDV (HDAC_interact domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RRZ2_SAPDV)

HSP 1 Score: 208 bits (530), Expect = 1.030e-55
Identity = 116/238 (48.74%), Postives = 154/238 (64.71%), Query Frame = 1 
Query:   10 GEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIRFDCEDERFELDMVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVA 723
            GEV +   E+W   PL E DL+   +  PSYR LP ++P+   S R+ +E++V ND WVSVP GSE    D +FK+MRKNQ+E+ LFK           CEDERFE+DMVI+A +S I +L P+ +EI+ +  T+   +Q+ LD+  L    L AITRIYG+ G +ILELLRK+P   +PVIL RL QKD EWR +R+ LNK W +V    Y+KSLD  S   K +DKKA SA+ L+A
Sbjct:  637 GEVKD-QHEIWPFIPLAETDLSQCRRATPSYRALPSSYPIPPSSSRSKMERAVCNDAWVSVPTGSE----DFSFKNMRKNQYEEALFK-----------CEDERFEIDMVIDANASTIAILTPLAKEIETLAATSPTGWQYVLDKGALRVTHLNAITRIYGEAGHQILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHKSLDHSSFYFKQKDKKATSAKALLA 858
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8231.19588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X2_ECTSI4.170e-17488.42HDAC_interact domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFU2_9PHAE1.040e-11587.25Sin3a_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XWL9_HETAK5.690e-6950.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UGB0_9STRA1.890e-5945.24Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835ZD67_9STRA9.590e-5945.14HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A7S3HNY2_9STRA1.880e-5844.33Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3MGY4_9STRA2.090e-5644.33Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A067BV90_SAPPC2.380e-5648.74HDAC_interact domain-containing protein n=1 Tax=Sa... [more]
A0A1V9ZFI4_9STRA4.050e-5649.13Paired amphipathic helix protein Sin3 n=1 Tax=Thra... [more]
T0RRZ2_SAPDV1.030e-5548.74HDAC_interact domain-containing protein n=1 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8231contigEcto-sp13_S_contig8231:67..6367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score540.8
Seed ortholog evalue5.5e-151
Seed eggNOG ortholog2880.D7G0X2
Model size1233
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.histone deacetylation
EggNOG OGsCOG5602@1,KOG4204@2759
Ec32 ortholog descriptionPaired amphipathic helix
Ec32 orthologEc-23_001970.1
Cds size1233
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8231.19588.1prot_Ecto-sp13_S_contig8231.19588.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8231 67..6367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464094.0208461-CDS-Ecto-sp13_S_contig8231:66..1021681464094.0208461-CDS-Ecto-sp13_S_contig8231:66..102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 67..102 +
1681464094.0360527-CDS-Ecto-sp13_S_contig8231:1350..14581681464094.0360527-CDS-Ecto-sp13_S_contig8231:1350..1458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 1351..1458 +
1681464094.0446818-CDS-Ecto-sp13_S_contig8231:2049..22111681464094.0446818-CDS-Ecto-sp13_S_contig8231:2049..2211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 2050..2211 +
1681464094.0538409-CDS-Ecto-sp13_S_contig8231:2581..26921681464094.0538409-CDS-Ecto-sp13_S_contig8231:2581..2692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 2582..2692 +
1681464094.0631094-CDS-Ecto-sp13_S_contig8231:3173..33501681464094.0631094-CDS-Ecto-sp13_S_contig8231:3173..3350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 3174..3350 +
1681464094.0722737-CDS-Ecto-sp13_S_contig8231:3830..39731681464094.0722737-CDS-Ecto-sp13_S_contig8231:3830..3973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 3831..3973 +
1681464094.0812466-CDS-Ecto-sp13_S_contig8231:4557..46281681464094.0812466-CDS-Ecto-sp13_S_contig8231:4557..4628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 4558..4628 +
1681464094.0902784-CDS-Ecto-sp13_S_contig8231:5039..51371681464094.0902784-CDS-Ecto-sp13_S_contig8231:5039..5137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 5040..5137 +
1681464094.09921-CDS-Ecto-sp13_S_contig8231:5467..57101681464094.09921-CDS-Ecto-sp13_S_contig8231:5467..5710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 5468..5710 +
1681464094.108212-CDS-Ecto-sp13_S_contig8231:6283..63671681464094.108212-CDS-Ecto-sp13_S_contig8231:6283..6367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8231 6284..6367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8231.19588.1

>prot_Ecto-sp13_S_contig8231.19588.1 ID=prot_Ecto-sp13_S_contig8231.19588.1|Name=mRNA_Ecto-sp13_S_contig8231.19588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
SQQGEVNEIASEMWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERT
SLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKASRFLESIR
FDCEDERFELDMVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRV
LSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSR
ERLNKLWSNVQRGTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRTAL
LAKEEEPKPLDRAALADAADAAAKEAAKASSSSSGGGGDEDDDVKGKGKG
KKDDDMETEDNEAGSKEGKGAAGGDGDKGKAAAAEESKDESNQDGTNDAS
SSSPPGKQQQKVKAETQNGGGKAGEEGARQAAVDKMVADHEAQVKAAKQA
KAERYRRPPSS
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mRNA from alignment at Ecto-sp13_S_contig8231:67..6367+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8231.19588.1 ID=mRNA_Ecto-sp13_S_contig8231.19588.1|Name=mRNA_Ecto-sp13_S_contig8231.19588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8231:67..6367+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAGCAGGGAGAAGTCAACGAGATTGCGTCAGAGGTGAGTAGGGGGGG
AAAATCGCGGGGTAGCAAGGGTGAAATGGGACATGTTGTCCCGGTCGTTG
TACTTTGCGTTCTTGTGTTTCGGTGCCTTGTGGTATGACGCACTTGATGC
AAAAATGTCTGCTGGAGCCTGTTACCCGCGGGGGAGATATCGCTGTATGC
TGCTCGGAAATTGTAGAAACACGGGTAGCTTCGCTGATGCTTCATGAATT
CATTGCTAATTTATCTTTTTACTCTTTTCTAGGGAAATGTTTTTCGCTGA
TGGTATGAAATCATGATTTCATTGCTAATCGATGTTAGACTCTACACTAG
ATTGAGAGAGATTCATTGTGTCATGTTAGGAAAACACAAAAAGTTAGTGC
CGAAAGCGAAGGGCCACGCCAGAGTGGAGGGTCAGAGTTCGTTGGGCTGA
GCGTGAACTGCCGCATCAACTCCGCATTTGTGAACACAAATTTGTTGCCG
AAAGTGAGGCAGCAGTGGTTCTATGTACGGTTGGCTAAGGGGGAACTACA
CCGGTAGCCCTGCATGTGCCAAGCACGCGGAGGTGTATGTACGAAGAAAA
ATGACACTGCTTCTGTTCTGTTCACCATTTTTGTTTTTTTCATTCTGATT
TGGTTGTTGTTGAGCAAGACGCCTACTAGACAACGTGCAGGTTACGGATC
TGGCTAAGTGTCAAATTATGGTAGTAAGCGTTTCCTCGACGTGTTGAGGT
CGTCCAGGAGTGTCTGTAGCGAACGCTTGGCGCAAGCTTGTACTAGCAGT
AGGTGCATGGCTTCGTCCTCATTTATATATTTTCTGGTACAACGCAGCAG
CAGAGGTCCCTCAACAAGAGTGGCCGCCGTACAAAGGCCGGTCGCCATGT
ATTAAGGTCGATGATACCGCGTGCTATATATAATATGCAAGTCTCATGCT
CTGAATGGTGCCTGTCGCCATGAGGTCGGTGAAATCTCCTGACAAATGGA
ATATTAAAGTCTCCTGCTCTGATGAATAGTGGCGGGTACCCGGTACACTC
GCCGCCAAACATGTGTGGCACTATTCGGCCGTTAACGGAAGGACGACTAC
AGAGTAGCGATATAGGAGCGTTGTATGCTTACCTGTGTTCGTTCAGACCT
TGAAGACTTGTGTTACATTGTTTGGTTGCGGTGTAGACCAGCCTAACAAC
AGGCGTGAGCAAGACGCTGGTACAGAGACAGCAACGAACAGGCTGATTTT
TCTCTCTTTTTTTTTTTTTGTTTTTGTCGGACAGATGTGGACCAATACCC
CTCTGAACGAGCTGGACCTGACGCTCAGCGAGAAGGGCGGCCCTAGCTAC
CGGCACCTGCCCAAGAACTTCCCGCTATTGAGCTGCAGCGAGGTAAGGGG
CTGCTCCTTCATCGCAGGTTGTTGTTGTTGTTGCTGCTGTCGTTTGTCCC
CATAGCCCATGAACACTCGCTGGAGCGGAGCGCCTCTGTTCTTTCCCTCT
TGCGAAGAAACATTGCGACTCCCCCCCCCCCATTGGCGTTTATATACGAC
TAGGCTGTCTGTCAACACCGTCATACGAACGCCTGCGGGGGGGATGATAC
AGTCCTCCTGATTGGAAGTACAGGGAACGTTGGGGGGGGTGATCACGTTA
CTTCTGAAAGTCCCACTGTATGTTTCGAGTGACAACAGTGCGGAACGACG
CGCGTTCGACTCGATTTGTTCACTTTCTTCCTCTCCTGAATTTTTGGGCG
GTGCTGGCTTCAGCATTCCCGTTCTCGTCTTTGTCTCCGCATCCTCCTCA
TGCTGGAAGCAAATTCTCACACCGCGATTTCTTGTTAGGTCCAATGCTTT
CACCAACCCCCTCTATCCCCCGACCTCCTTAGGCTCTTCCACGACGGATG
CCTTTCTCGCGCTGGTTATTTTCCCCCGTCCGCCCCTCCCACCCAATACA
TTACCCACCCCTATCTGCGTACCCCCTTCACAGCGTACCTCCCTGGAGCA
ATCAGTGCTTAACGACTTGTGGGTGAGCGTCCCCGTGGGATCCGAGGGAG
GGGGAAGCGACGTGGCCTTCAAGCACATGCGCAAGAACCAGCACGAGGAC
CTCCTGTTCAAGGCGAGCAGATTCCTCGAGAGCATTCGCTTTGACGTTTT
TCGGTTGAGTGCCATTATTTTTTTTGTCCTCCCTCCCCCAAAAACAGAAG
GCGAGAAAACGTTAGATACGATTAGATTTCACAAAGACACGCGCGCACGA
TAACAACAAAAGACTCCCACACACACTTTGTTGTTTGTTCTTTGAGCGTG
GCGTAGACGGGGTATTTCGGTGGAAGAAATCGCAAGATACCGACTCCCCT
TGGTCGTGTTTTGTGGATTTGTTTGAGGAGAAACGATTACAGTGAGTGCT
TGATGATGTACATATTTTTGGTTGAAACAAAAGTACGTTTGAGCGTTGTT
TGTACTTTTGCATCCAACCCCCCCCCTCCTTCTCTGCCCTTCTCTGTTGT
ATGCTTTTGGTCTAGTGTGAGGATGAGCGTTTCGAGCTGGACATGGTGAT
CGAGGCCGGTAGCAGCGCGATCAACCTCTTGGAGCCCATGGAGGAGGAAA
TCAAGTGCATCGACAAGACCGCGGGGGTAAGAACGAGGGAGACAAAAAGA
GAGACACAGGGGAGAGACTCAAAGAGAGACTCAAAGAGAGACTCAAAGAG
AGACTCAAAGAGAGACTCAAAGAGAGACTCAAAGAGAGACTCAAAGAGAG
AGAGCGAGAGAAACTGAGGCTATGATATCAAGTTTTGATCAATCGACTCC
GATGGCTGATAGATTCGATGCCGATGTCTATCGGCAGGCCCACGGTAGTG
TTTGCATGGTTGTCATGACAACGCTAGTAGAAGGTGATATCGCTCCGGGA
ACATAGAAGTGTACGACAGCCCCGCAGCACAGGGCACCTAATCCCAACAA
AAAATGTTGGGGCATGCAGCCCCATGCCTGAAAGAAGAATGCATACCCAC
GCAATCGCAAAAATAGCGTCCAACCCACACGGCAGAATCAGCTGCGCGAC
GTCGCGGGAAAGTCTGATTGGCTCACCGACCTCACGCTTGCCGTTTCTCC
TCGCCAGGCTCGCTACCAGTTCAAGCTGGACAGGCGCGTGCTGAGCCCAG
TCCAGCTGGCTGCCATCACGAGGATCTACGGAGATCACGGAGCGGAGATC
CTGGAGCTCCTGCGGAAGAACCCTTGCAAGACGGTGCCGGTGATTCTGGC
CAGGCTGAGGCAGAAGGACGTGGAGTGGCGGGTGGTGAGTCGCTCTCGCT
GATTGTAATGTTGTCCGTGGACTGTTGCCATTTTTTTTGCTTGAACCAAA
TGTGTCTGCGGTAGCCGGCTGTGTGACCCCTGGAGCGTAAAGTATGATGC
GCTTGCTCGGGCGTTTTTTGTTCGTCTCTTCATGTCGCATTTTCGTTTTT
TGCGTGCGAGGCTCTCATCGCTCAGGGCACCAGGAAGATGCGAAGGCTTA
GAGTAGTGAGGTCAACCTCTCTCTAATTTGTGTGTTTTGGTGTGCATATC
TTGTTTCAGGAAGTAATGAACGGCATCATTTGCCCGCCCATAAATAGTTC
ATACTTCTATCATTGACAGTGTTCGTTTCATCCATGCTAGTATCGGCTAT
CTTTCATAGTTATGTAAATACCACGCGAGCGCTTTTTTTAGTTTTTTTGG
GTGGTTCGAATTCTTTTCTGACTCGTTTCTTTTCCTTTTTCCCCGCGGTT
GCGCCCGACTGCAGTCGCGGGAGCGGCTGAACAAGCTGTGGTCGAACGTG
CAGCGCGGCACCTACTACAAGTCTCTGGACCGGCGGTCCATCGACCTCAA
GAACGAGGACAAGAAGGCTCACTCCGCGAGAGTTCTCGTCGCCGACATCA
CCCACAGGTGTCTAGGAAGACACGAAGACTCTTCTTCTCTTTCTTGTTCT
TGTTGTTCTTTTTGTTCTTTTTTCTTGAAGTGACGAAACGAATCCGTCTC
TATCCATGGATCAGAGTCACTCACAGGTGTGTAGTGTGTAGGAAGACACG
AATACTTCTTCTCCTTCGTGTTGTTGTTGTTGTTGTTGTTCTTCTTCTTT
TTGTTCTTTTTTGCTTGATATGACAAAACGAATCCGTCTCTATCCATTGG
TCAAGAGTCACCCACACAAGGTGTGTAGTGCGTAGGAAGGCACGAATCCT
GGCTCTAGTTCTTGTCCTCGACCTTTTTTTTTTATGTGACACAATGAATC
CACTCTTCTGTTGTGTTTTCAAGAACGAGACTCTGTGTTTTATCTTTCTG
AAACGGCTGCTGCCATTTTTTTATGGATTCCCTTCGCCGAGTGGTTCGAA
AACTTTAATGTCCTTCCCCTCGATCTTCTTGTTCACACACAACGATAACA
CTACTTAGCTGCCCTCTCCACAGTGTGTACAGTATCTTGCACAAACGACC
ACGAGGAAGTGAAGAACCTTCCTATCGATCTGGTCGTGCAGGCGCACGGC
CCTGTTGGCGAAGGAGGAGGAGCCCAAGCCTCTGGACAGGGCGGCTCTTG
CGGACGCCGCCGGTAAGCGAAAATAAATACATATGAAGGTAGAGAATCTC
GGGTGGGTAGCCCGCGCTGTCCACAGTCCCCTGTCTTGGCGCTGCTCGAA
CAGTAGATGTGCGATGGCTAGGTGTGCATCGATGACCCTTTCAACATGTT
TTCCCTCTGTCACCCTCTCTCTCGCGCGCGCCCTGTCTCTCTCTCTAGCC
CCATCCCTCTCTCTTTACGATTTACTCAACCGATGTTTCCATCGTTTTTT
TCTCCTTGTCCCAATCCCCCTCTCGTATGTGACTGAGTTATCCAATGTTT
TTTTCAACGTGTTCTCCTTTTGTCTCCATCTCTCTGGCCCTATCCCTCTC
TCTTGTGTGACTTACCTCAAGCGATGAAACGTGGTTGCTTTTTTGTTGCG
TCGTTGCGTCATCTTTTTGTCAGATGCCGCGGCGAAGGAGGCGGCTAAGG
CTAGCAGCAGCAGCAGCGGCGGCGGCGGCGACGAGGATGATGACGTTAAG
GGCAAGGGCAAGGGAAAGAAGGTAGTGACCAAGTCGGTCTCGCTCGCGCT
GACTTGCAGCCGTTGTGTCTTGATGTTGATAGCGGTTCCGCTCAGATGAG
GCGTTTTTTTTATGTTTTGGGTGTGAACGGTATCCTTGTAGGGAAGTATA
GAGCCGTCTTGTAACGTACCAAACGTACAAGTGACCTCTCTCGTAGCAGT
AGACAGGACTTGTGTCCCGGGTGGACCATGATGGTCGAAGTGACTAGGTA
ATGGGGCCAGCTACAGTTGAGTACCCACCCTCGTGCACCCCCCCCAAATA
GCTGAGTCCCCCCCCTCCCCCCCCTTTTGCACCGGCCCCCTGCTCTATTA
GGATGATGACATGGAGACCGAAGACAACGAGGCTGGCTCCAAGGAGGGTA
AAGGTGCCGCCGGCGGCGATGGAGACAAGGGCAAGGCGGCCGCGGCAGAA
GAGAGCAAGGACGAGAGCAACCAAGACGGGACGAACGATGCATCCTCTTC
GTCGCCGCCCGGCAAGCAGCAGCAGAAGGTCAAGGCCGAGACGCAGAACG
GCGGCGGCAAGGCGGGGGAGGAGGGGGCCCGACAAGCGGCTGTGGTAAGG
GGGGGGGGGTTTACCACGTAGCCGTTCATGCCGTATTTAGACTCGTACCC
CTACGAAGCCGGGACGGATACCGGACCAGGCTGTCGCATCACCAAGCGCG
AAGCGCCCTGAGGAGAGGCGGGGGAACTCTTATGTTTTGCATGCCTCAGC
GGTTAGATCATTGACCACGCGTCCTGCAGAGAAGGGGGGGGGGGCAGTTG
TTGATGTGTGCTGCTCGTGACGTTGGTTGTCACGTTTTTTTATGGTTTTC
TCATGATTTTTCCGGGCCTGGTTGCGATGGTTGATGGTTGTTGCTCGTGA
CGCTGGTTATCATGGCGGTTGGTGATTTTGTCGTGGTGTACACATTGGCC
CGGTTGCTGCTGCGCCGTCGGCGTTATGCCGAGCGATTGCAGTCCATACC
TTTTGCTCGACCCGTTACCGCTTCGCTTATTGCTCATGACGTTGGTTACC
ATACCTGTTGTTATGTTGTGTCATAAGCTTTTCACTGGCCTGGTTGCTGC
TGAGCTACTGGCGTCCCTACCGTCTGTTTGGCCGTTTTTTTTCTGCTTCT
CTGATTTCCCGATACAGGACAAGATGGTGGCCGACCACGAAGCTCAAGTA
AAGGCAGCCAAGCAGGCCAAGGCCGAAAGGTACCGTAGGCCGCCCTCCTC
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8231:67..6367+

>mRNA_Ecto-sp13_S_contig8231.19588.1 ID=mRNA_Ecto-sp13_S_contig8231.19588.1|Name=mRNA_Ecto-sp13_S_contig8231.19588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8231:67..6367+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAGCAGGGAGAAGTCAACGAGATTGCGTCAGAGATGTGGACCAATAC
CCCTCTGAACGAGCTGGACCTGACGCTCAGCGAGAAGGGCGGCCCTAGCT
ACCGGCACCTGCCCAAGAACTTCCCGCTATTGAGCTGCAGCGAGCGTACC
TCCCTGGAGCAATCAGTGCTTAACGACTTGTGGGTGAGCGTCCCCGTGGG
ATCCGAGGGAGGGGGAAGCGACGTGGCCTTCAAGCACATGCGCAAGAACC
AGCACGAGGACCTCCTGTTCAAGGCGAGCAGATTCCTCGAGAGCATTCGC
TTTGACTGTGAGGATGAGCGTTTCGAGCTGGACATGGTGATCGAGGCCGG
TAGCAGCGCGATCAACCTCTTGGAGCCCATGGAGGAGGAAATCAAGTGCA
TCGACAAGACCGCGGGGGCTCGCTACCAGTTCAAGCTGGACAGGCGCGTG
CTGAGCCCAGTCCAGCTGGCTGCCATCACGAGGATCTACGGAGATCACGG
AGCGGAGATCCTGGAGCTCCTGCGGAAGAACCCTTGCAAGACGGTGCCGG
TGATTCTGGCCAGGCTGAGGCAGAAGGACGTGGAGTGGCGGGTGTCGCGG
GAGCGGCTGAACAAGCTGTGGTCGAACGTGCAGCGCGGCACCTACTACAA
GTCTCTGGACCGGCGGTCCATCGACCTCAAGAACGAGGACAAGAAGGCTC
ACTCCGCGAGAGTTCTCGTCGCCGACATCACCCACAGGCGCACGGCCCTG
TTGGCGAAGGAGGAGGAGCCCAAGCCTCTGGACAGGGCGGCTCTTGCGGA
CGCCGCCGATGCCGCGGCGAAGGAGGCGGCTAAGGCTAGCAGCAGCAGCA
GCGGCGGCGGCGGCGACGAGGATGATGACGTTAAGGGCAAGGGCAAGGGA
AAGAAGGATGATGACATGGAGACCGAAGACAACGAGGCTGGCTCCAAGGA
GGGTAAAGGTGCCGCCGGCGGCGATGGAGACAAGGGCAAGGCGGCCGCGG
CAGAAGAGAGCAAGGACGAGAGCAACCAAGACGGGACGAACGATGCATCC
TCTTCGTCGCCGCCCGGCAAGCAGCAGCAGAAGGTCAAGGCCGAGACGCA
GAACGGCGGCGGCAAGGCGGGGGAGGAGGGGGCCCGACAAGCGGCTGTGG
ACAAGATGGTGGCCGACCACGAAGCTCAAGTAAAGGCAGCCAAGCAGGCC
AAGGCCGAAAGGTACCGTAGGCCGCCCTCCTCT
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