mRNA_Ecto-sp13_S_contig82300.19587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82300.19587.1
Unique NamemRNA_Ecto-sp13_S_contig82300.19587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82300.19587.1 vs. uniprot
Match: D7G951_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.230e-8
Identity = 41/113 (36.28%), Postives = 43/113 (38.05%), Query Frame = -2 
Query:    3 TLDRFVSRDVPSWVERWLEERGSLGLDMYEILFCLSPRRSCRTLLVNMRATPSDKLLCRPRSVPALFDRVPNPNTSLPSCPALVPSARRTFRELEHVKLRCFRCPGEPEFRDV 341
            T D F+     SWVER LEERGSLGLDM                                                            R FRELEHVKLRCFRCPGEPEFR +
Sbjct:  206 TTDLFLEA---SWVERRLEERGSLGLDM------------------------------------------------------------RNFRELEHVKLRCFRCPGEPEFRHM 255
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BLAST of mRNA_Ecto-sp13_S_contig82300.19587.1 vs. uniprot
Match: A0A6H5K130_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K130_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.140e-6
Identity = 38/113 (33.63%), Postives = 41/113 (36.28%), Query Frame = -2 
Query:    3 TLDRFVSRDVPSWVERWLEERGSLGLDMYEILFCLSPRRSCRTLLVNMRATPSDKLLCRPRSVPALFDRVPNPNTSLPSCPALVPSARRTFRELEHVKLRCFRCPGEPEFRDV 341
            T D F+     SWVER LEERGS+GLDM                                                                ELEHVKLRCFRCPGEPEFRD+
Sbjct:   31 TTDLFLET---SWVERRLEERGSIGLDM----------------------------------------------------------------ELEHVKLRCFRCPGEPEFRDL 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82300.19587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G951_ECTSI5.230e-836.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K130_9PHAE1.140e-633.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82300contigEcto-sp13_S_contig82300:30..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size353
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.9937208-CDS-Ecto-sp13_S_contig82300:29..3801681464093.9937208-CDS-Ecto-sp13_S_contig82300:29..380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82300 30..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82300.19587.1prot_Ecto-sp13_S_contig82300.19587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82300 30..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82300.19587.1

>prot_Ecto-sp13_S_contig82300.19587.1 ID=prot_Ecto-sp13_S_contig82300.19587.1|Name=mRNA_Ecto-sp13_S_contig82300.19587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
STSRNSGSPGQRKHLNFTCSSSLNVRLADGTKAGHDGRLVFGLGTRSNNA
GTERGRQSSLSDGVARMFTNSVLHERRGDKQKSISYMSRPRLPRSSSHLS
TQDGTSRETNLSRVVQ*
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mRNA from alignment at Ecto-sp13_S_contig82300:30..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82300.19587.1 ID=mRNA_Ecto-sp13_S_contig82300.19587.1|Name=mRNA_Ecto-sp13_S_contig82300.19587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82300:30..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACGTCTCGGAATTCCGGCTCGCCCGGGCAGCGAAAGCACCTCAACTT
CACATGCTCGAGTTCCCTGAATGTTCGCCTGGCGGACGGGACCAAAGCGG
GACACGACGGAAGGCTTGTATTTGGGTTAGGTACACGATCAAATAATGCG
GGAACAGAGCGAGGCCGACAGAGTAGTTTGTCCGACGGTGTTGCCCGCAT
GTTCACCAACAGCGTTCTGCATGAACGACGGGGAGACAAGCAGAAGAGTA
TCTCATACATGTCGAGACCGAGGCTTCCCCGCTCCTCCAGCCACCTCTCT
ACCCAGGACGGGACGTCTCGAGAAACAAATCTGTCGAGGGTGGTACAGTG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82300:30..380+

>mRNA_Ecto-sp13_S_contig82300.19587.1 ID=mRNA_Ecto-sp13_S_contig82300.19587.1|Name=mRNA_Ecto-sp13_S_contig82300.19587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82300:30..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACGTCTCGGAATTCCGGCTCGCCCGGGCAGCGAAAGCACCTCAACTT
CACATGCTCGAGTTCCCTGAATGTTCGCCTGGCGGACGGGACCAAAGCGG
GACACGACGGAAGGCTTGTATTTGGGTTAGGTACACGATCAAATAATGCG
GGAACAGAGCGAGGCCGACAGAGTAGTTTGTCCGACGGTGTTGCCCGCAT
GTTCACCAACAGCGTTCTGCATGAACGACGGGGAGACAAGCAGAAGAGTA
TCTCATACATGTCGAGACCGAGGCTTCCCCGCTCCTCCAGCCACCTCTCT
ACCCAGGACGGGACGTCTCGAGAAACAAATCTGTCGAGGGTGGTACAGTG
A
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