prot_Ecto-sp13_S_contig12347.1958.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12347.1958.1
Unique Nameprot_Ecto-sp13_S_contig12347.1958.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length209
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 5.490e-62
Identity = 116/165 (70.30%), Postives = 126/165 (76.36%), Query Frame = 0 
Query:   53 HRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVP--------QISMAKMYRPSPKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWRCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIRNWIAATGITVLVDIV 209
            H  R+  S ++L   LF  S      + ++ L   +         QISMAKMYRP PKV+HSHQHVSS TIDLC LRNTAAVKIQTLVRMYQA QRAVRRQEVV W+ P V+SMRKRLTFRAYTCLIVFTASVAWINLCYV LYDGPAIRNWIAATGI VLVDIV
Sbjct:  699 HGMRNAASSTALYGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIV 863
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BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Match: D7FLP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP9_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 9.310e-62
Identity = 106/150 (70.67%), Postives = 118/150 (78.67%), Query Frame = 0 
Query:   53 HRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVP--------QISMAKMYRPSPKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWRCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIR 194
            H  R+  S ++L   LF  S +    + ++ L   +         QISMAKMYRP PKV+HSHQHVSSSTIDLC LRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW+CPRVKSMR+RLTFRAY CLIVFTASVAWINLCYVV+YDGPAIR
Sbjct:  125 HGVRNAASSTALYGTLFALSVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWQCPRVKSMRRRLTFRAYACLIVFTASVAWINLCYVVMYDGPAIR 274
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BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 3.170e-57
Identity = 107/150 (71.33%), Postives = 119/150 (79.33%), Query Frame = 0 
Query:   53 HRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVP--------QISMAKMYRPSPKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWRCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIR 194
            H  R+  S ++L   LF  S +    + ++ L   +         QISMAKMYRP PKV+HSHQHVSSSTIDLC LRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW+CPRVKSMR+RLTFRAYTCLIVFTASVAWINLCYVV+YDGPAIR
Sbjct: 1633 HGVRNAASSTALYGTLFALSVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVWQCPRVKSMRRRLTFRAYTCLIVFTASVAWINLCYVVMYDGPAIR 1782
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12347.1958.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE5.490e-6270.30GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLP9_ECTSI9.310e-6270.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4X3_ECTSI3.170e-5771.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..163
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 188..209
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..187
NoneNo IPR availableTMHMMTMhelixcoord: 166..188
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 121..148
score: 6.705

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12347contigEcto-sp13_S_contig12347:2219..3674 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12347.1958.1mRNA_Ecto-sp13_S_contig12347.1958.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12347 2219..3675 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12347.1958.1 ID=prot_Ecto-sp13_S_contig12347.1958.1|Name=mRNA_Ecto-sp13_S_contig12347.1958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
CAPSGVLQAQPEKCGCRQYSGGAGSAKHCESTFFRGAVQPLPQAWSLWHM
HRHRARSVVSRSSLKAPLFPSSHLFRVRARRSSLYDVVPQISMAKMYRPS
PKVNHSHQHVSSSTIDLCFLRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW
RCPRVKSMRKRLTFRAYTCLIVFTASVAWINLCYVVLYDGPAIRNWIAAT
GITVLVDIV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS