mRNA_Ecto-sp13_S_contig8224.19579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8224.19579.1
Unique NamemRNA_Ecto-sp13_S_contig8224.19579.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.250e-14
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV
Sbjct:  244 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 278
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.250e-14
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV
Sbjct:  361 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 395
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A7S0DIF7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIF7_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GRFV+ V P +KR VGI HDSSRTGKTLY+EP QV
Sbjct:  408 GRFVLSVKPNFKRRVGIAHDSSRTGKTLYIEPFQV 442
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A7S3Y253_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y253_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 5.350e-8
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GR+V+ V PTYKR+VGIVH  SR+GKT+YVEP QV
Sbjct:  287 GRYVVAVKPTYKRSVGIVHGDSRSGKTVYVEPAQV 321
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A2G6R047_9BACT (Endonuclease MutS2 (Fragment) n=1 Tax=Paludibacter sp. TaxID=1898105 RepID=A0A2G6R047_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.380e-7
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTV-GIVHDSSRTGKTLYVEPTQV 105
            GR VIPV P+YKR + GI+HD S TGKT+Y+EPTQV
Sbjct:  198 GRLVIPVLPSYKRKISGIIHDESATGKTVYIEPTQV 233
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A7S2H3Q5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3Q5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-7
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    4 RFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            RFV+P+ PT KR +GI+HD+SR+ KT+YVEP QV
Sbjct:   53 RFVVPIKPTNKRGIGIIHDASRSAKTIYVEPAQV 86
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A1E7FVZ7_9STRA (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVZ7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GR V+P+ P Y   +GIVHDSSR+GKT+YVEP+++
Sbjct:  110 GRLVLPINPKYASALGIVHDSSRSGKTVYVEPSEI 144
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A7S4ENI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ENI8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GR V+P+ P Y   +GIVHDSSR+GKT+YVEP+++
Sbjct:  410 GRLVLPINPKYASQLGIVHDSSRSGKTVYVEPSEI 444
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A6V0BCP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BCP0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQV 105
            GR V+P+ P Y   +GIVHDSSR+GKT+YVEP+++
Sbjct:  494 GRLVLPINPKYASQLGIVHDSSRSGKTVYVEPSEI 528
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BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Match: A0A7S1BBM6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBM6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 GRFVIPVTPTYKRTVG-IVHDSSRTGKTLYVEPTQV 105
            GRFV+P++PT+K  VG IVHD SRTG+TLYVEP ++
Sbjct:  230 GRFVVPLSPTFKNRVGGIVHDVSRTGRTLYVEPPEL 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8224.19579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP1_ECTSI4.250e-14100.00MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE4.250e-14100.00DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S0DIF7_9EUKA2.910e-874.29Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S3Y253_HETAK5.350e-871.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2G6R047_9BACT2.380e-769.44Endonuclease MutS2 (Fragment) n=1 Tax=Paludibacter... [more]
A0A7S2H3Q5_9STRA4.870e-764.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1E7FVZ7_9STRA1.250e-660.00p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4ENI8_9STRA1.710e-660.00Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A6V0BCP0_9STRA1.710e-660.00Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S1BBM6_9STRA1.710e-666.67Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8224contigEcto-sp13_S_contig8224:192..326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score75.1
Seed ortholog evalue9.4e-12
Seed eggNOG ortholog2880.D8LGP1
Model size135
KEGG koko:K07456
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
Exons1
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
Ec32 ortholog descriptionMutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1
Ec32 orthologEc-10_002970.1
Cds size135
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.433856-CDS-Ecto-sp13_S_contig8224:191..3261681464093.433856-CDS-Ecto-sp13_S_contig8224:191..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8224 192..326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8224.19579.1prot_Ecto-sp13_S_contig8224.19579.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8224 192..326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8224.19579.1

>prot_Ecto-sp13_S_contig8224.19579.1 ID=prot_Ecto-sp13_S_contig8224.19579.1|Name=mRNA_Ecto-sp13_S_contig8224.19579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
GRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQVGVRERWTCN*
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mRNA from alignment at Ecto-sp13_S_contig8224:192..326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8224.19579.1 ID=mRNA_Ecto-sp13_S_contig8224.19579.1|Name=mRNA_Ecto-sp13_S_contig8224.19579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8224:192..326- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCTTCGTCATCCCGGTTACGCCCACCTACAAGAGAACCGTGGGGAT
CGTGCACGACAGCTCCAGGACAGGGAAGACGCTCTACGTCGAGCCAACAC
AGGTAGGTGTGCGTGAGAGATGGACATGCAATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8224:192..326-

>mRNA_Ecto-sp13_S_contig8224.19579.1 ID=mRNA_Ecto-sp13_S_contig8224.19579.1|Name=mRNA_Ecto-sp13_S_contig8224.19579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8224:192..326- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCTTCGTCATCCCGGTTACGCCCACCTACAAGAGAACCGTGGGGAT
CGTGCACGACAGCTCCAGGACAGGGAAGACGCTCTACGTCGAGCCAACAC
AGGTAGGTGTGCGTGAGAGATGGACATGCAATTAG
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