mRNA_Ecto-sp13_S_contig8219.19576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8219.19576.1
Unique NamemRNA_Ecto-sp13_S_contig8219.19576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8219.19576.1 vs. uniprot
Match: A0A6H5JI44_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI44_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.010e-55
Identity = 127/140 (90.71%), Postives = 127/140 (90.71%), Query Frame = -1 
Query:    1 GALDVVATAKGKEPMQKSTSLTAKVFATSSGVRSSVESTARSSAASXXXXXXXXXXXXXXXXXXXSPDTLSPTSTSADAPHTRSMGRRQGDSTRMMQKLFGKTDEGPGASSSQPTSPSSRPAPKESGDSSRSLVSGPTDD 420
            GALDVVATAKG EPMQKSTSLTAKVFAT SGVRSSVESTARSSAAS      XXXXXXXXXX   SPD LSPTSTSADAPHTRSMGRRQGDSTRMMQKLFGKTDEGPGASSSQPTSPSSRPAPKESGDSSRSLVSGPT D
Sbjct:  535 GALDVVATAKGTEPMQKSTSLTAKVFATGSGVRSSVESTARSSAASATETSFXXXXXXXXXXENASPDILSPTSTSADAPHTRSMGRRQGDSTRMMQKLFGKTDEGPGASSSQPTSPSSRPAPKESGDSSRSLVSGPTVD 674
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8219.19576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI44_9PHAE2.010e-5590.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8219contigEcto-sp13_S_contig8219:3482..3931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categorymitochondrion
Exons1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.2997797-CDS-Ecto-sp13_S_contig8219:3481..39311681464093.2997797-CDS-Ecto-sp13_S_contig8219:3481..3931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8219 3482..3931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8219.19576.1prot_Ecto-sp13_S_contig8219.19576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8219 3482..3931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8219.19576.1

>prot_Ecto-sp13_S_contig8219.19576.1 ID=prot_Ecto-sp13_S_contig8219.19576.1|Name=mRNA_Ecto-sp13_S_contig8219.19576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
VVGGPRHEAPATVARLLRRGPRGWRCRLRGGRAWPLVRLPEQFLHHAGGV
PLAPPHAPRVGRVCGRGGRAEGVRGGVPVTVAAAAAARKRRLRRRGRRRP
RRRFDGRPHARAGSEHLRRQARRLLHRLLTLGSRHHVQGSRRRRRRHADV
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mRNA from alignment at Ecto-sp13_S_contig8219:3482..3931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8219.19576.1 ID=mRNA_Ecto-sp13_S_contig8219.19576.1|Name=mRNA_Ecto-sp13_S_contig8219.19576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8219:3482..3931+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTCGGTGGGCCCCGACACGAGGCTCCTGCTACTGTCGCCCGACTCCT
TCGGCGCGGGCCTCGAGGATGGCGATGTCGGCTGCGAGGAGGACGCGCCT
GGCCCCTCGTCCGTCTTCCCGAACAGTTTCTGCATCATGCGGGTGGAGTC
CCCCTGGCGCCGCCCCATGCTCCTCGTGTGGGGCGCGTCTGCGGACGTGG
AGGTCGGGCTGAGGGTGTCCGGGGAGGCGTTCCCGTCACCGTCGCCGCCG
CCGCCGCCGCCCGAAAAAGACGTCTCCGTCGCCGAGGCCGCAGACGACCT
CGCCGTCGATTCGACGGACGACCTCACGCCCGAGCTGGTAGCGAACACCT
TCGCCGTCAGGCTCGTAGACTTCTGCATCGGCTCCTTACCCTTGGCAGTC
GCCACCACGTCCAAGGCTCCCGCCGCCGCCGCCGCCGCCACGCTGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8219:3482..3931+

>mRNA_Ecto-sp13_S_contig8219.19576.1 ID=mRNA_Ecto-sp13_S_contig8219.19576.1|Name=mRNA_Ecto-sp13_S_contig8219.19576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8219:3482..3931+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTCGGTGGGCCCCGACACGAGGCTCCTGCTACTGTCGCCCGACTCCT
TCGGCGCGGGCCTCGAGGATGGCGATGTCGGCTGCGAGGAGGACGCGCCT
GGCCCCTCGTCCGTCTTCCCGAACAGTTTCTGCATCATGCGGGTGGAGTC
CCCCTGGCGCCGCCCCATGCTCCTCGTGTGGGGCGCGTCTGCGGACGTGG
AGGTCGGGCTGAGGGTGTCCGGGGAGGCGTTCCCGTCACCGTCGCCGCCG
CCGCCGCCGCCCGAAAAAGACGTCTCCGTCGCCGAGGCCGCAGACGACCT
CGCCGTCGATTCGACGGACGACCTCACGCCCGAGCTGGTAGCGAACACCT
TCGCCGTCAGGCTCGTAGACTTCTGCATCGGCTCCTTACCCTTGGCAGTC
GCCACCACGTCCAAGGCTCCCGCCGCCGCCGCCGCCGCCACGCTGACGTG
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