prot_Ecto-sp13_S_contig82059.19563.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig82059.19563.1
Unique Nameprot_Ecto-sp13_S_contig82059.19563.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: D8LU47_ECTSI (T-complex protein 1 subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU47_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.110e-30
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT
Sbjct:  249 ESQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 308          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A6S9KVF4_HETAK (T-complex protein 1 subunit gamma n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KVF4_HETAK)

HSP 1 Score: 107 bits (268), Expect = 6.530e-26
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVE+TKEEDWNTLLRMEEEYIENICAQIVA  PD+VITEKGVSDLAQHY +KA IT
Sbjct:  249 ESQTNVEITKEEDWNTLLRMEEEYIENICAQIVALRPDVVITEKGVSDLAQHYFVKAGIT 308          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A7S2SP58_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP58_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.610e-26
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVE+TKEEDW+TLLRMEEEYIEN+CAQIVA  PDIVITEKGVSDLAQHYL+KA+IT
Sbjct:  251 ESQTNVEITKEEDWDTLLRMEEEYIENLCAQIVAVRPDIVITEKGVSDLAQHYLLKANIT 310          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A836CR16_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR16_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.610e-26
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +S TNVEVT+E+DWNTLLRMEEEY+ENICAQIVAF PDIVITEKGVSDLAQHY MKA+IT
Sbjct:  250 ESATNVEVTQEDDWNTLLRMEEEYVENICAQIVAFKPDIVITEKGVSDLAQHYFMKANIT 309          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A7S2FP00_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FP00_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.380e-25
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVE+TKEEDW+TLLRMEEEYIEN+CAQIVA  PDIVITEKGVSDLAQHYL+KA+IT
Sbjct:  279 ESQTNVEITKEEDWDTLLRMEEEYIENMCAQIVAVKPDIVITEKGVSDLAQHYLLKANIT 338          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A2D4BDA5_PYTIN (T-complex protein 1 subunit gamma n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDA5_PYTIN)

HSP 1 Score: 103 bits (258), Expect = 2.000e-24
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVE+T E+DWNTLLRMEEEYIEN+CAQIVA  PDIVITEKGVSDLAQHY +KA+IT
Sbjct:  251 ESQTNVELTNEQDWNTLLRMEEEYIENLCAQIVAMKPDIVITEKGVSDLAQHYFVKANIT 310          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A485KTS9_9STRA (T-complex protein 1 subunit gamma n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KTS9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.140e-24
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVE+T E+DWNTLLR+EEEYIEN+CAQIVA  PDIVITEKGVSDLAQHY +KA+IT
Sbjct:  252 ESQTNVELTNEQDWNTLLRLEEEYIENLCAQIVAMKPDIVITEKGVSDLAQHYFVKANIT 311          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A8J2X7E5_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X7E5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.160e-24
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    2 SQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            S  NVE+TKEEDWNTLLR+EEEYIE++CAQIVA  PD+VITEKGVSDLAQHYLMKA+IT
Sbjct:  252 SNANVEITKEEDWNTLLRIEEEYIEHVCAQIVAARPDVVITEKGVSDLAQHYLMKANIT 310          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A7S2VZH4_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZH4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.460e-24
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            ++QTNVE+T  EDWNT+LRMEEEY+EN+C +I+AF PDIVITEKGVSDLAQHYL KADIT
Sbjct:  269 ETQTNVEITNTEDWNTMLRMEEEYVENMCMEIIAFQPDIVITEKGVSDLAQHYLAKADIT 328          
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A397DG51_9STRA (T-complex protein 1 subunit gamma n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DG51_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.060e-24
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 60
            +SQTNVE+T E+DWNTLLR+EEEYIEN+CAQIVA  PDIVITEKGVSDLAQHY +KA+IT
Sbjct:  662 ESQTNVELTNEQDWNTLLRLEEEYIENLCAQIVAMKPDIVITEKGVSDLAQHYFVKANIT 721          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU47_ECTSI3.110e-3098.33T-complex protein 1 subunit gamma n=1 Tax=Ectocarp... [more]
A0A6S9KVF4_HETAK6.530e-2686.67T-complex protein 1 subunit gamma n=1 Tax=Heterosi... [more]
A0A7S2SP58_9STRA6.610e-2686.67T-complex protein 1 subunit gamma n=1 Tax=Rhizochr... [more]
A0A836CR16_9STRA9.610e-2686.67T-complex protein 1 subunit gamma n=1 Tax=Tribonem... [more]
A0A7S2FP00_9STRA1.380e-2586.67T-complex protein 1 subunit gamma n=1 Tax=Florenci... [more]
A0A2D4BDA5_PYTIN2.000e-2483.33T-complex protein 1 subunit gamma n=1 Tax=Pythium ... [more]
A0A485KTS9_9STRA4.140e-2481.67T-complex protein 1 subunit gamma n=10 Tax=Saprole... [more]
A0A8J2X7E5_9STRA4.160e-2483.05T-complex protein 1 subunit gamma n=1 Tax=Pelagomo... [more]
A0A7S2VZH4_9STRA4.460e-2478.33T-complex protein 1 subunit gamma n=1 Tax=Eucampia... [more]
A0A397DG51_9STRA5.060e-2481.67T-complex protein 1 subunit gamma n=4 Tax=Aphanomy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002423Chaperonin Cpn60/TCP-1 familyPFAMPF00118Cpn60_TCP1coord: 2..61
e-value: 5.4E-13
score: 48.4
IPR027409GroEL-like apical domain superfamilyGENE3D3.50.7.10coord: 1..63
e-value: 2.4E-17
score: 65.4
IPR027409GroEL-like apical domain superfamilySUPERFAMILY52029GroEL apical domain-likecoord: 3..61
NoneNo IPR availablePANTHERPTHR11353:SF24T-COMPLEX PROTEIN 1 SUBUNIT GAMMAcoord: 1..61
NoneNo IPR availablePANTHERPTHR11353CHAPERONINcoord: 1..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82059contigEcto-sp13_S_contig82059:189..380 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82059.19563.1mRNA_Ecto-sp13_S_contig82059.19563.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig82059 189..380 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig82059.19563.1 ID=prot_Ecto-sp13_S_contig82059.19563.1|Name=mRNA_Ecto-sp13_S_contig82059.19563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLA
QHYLMKADITVRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002423Cpn60/TCP-1
IPR027409GroEL-like_apical_dom_sf