prot_Ecto-sp13_S_contig8200.19555.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8200.19555.1
Unique Nameprot_Ecto-sp13_S_contig8200.19555.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length360
Homology
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 640 bits (1650), Expect = 9.580e-208
Identity = 349/428 (81.54%), Postives = 353/428 (82.48%), Query Frame = 0
Query:    1 GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEEILEEEEGEVQGEDRAAAKEGXXXXXXXXXXXXXXXE---HEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR-------------------------------------------ETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRV----------------------SHKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 360
            GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSE+ILEEEE EVQGEDRAAAKEGXXXXXXXXXXX    E   HEAD+RSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTA+QAAKVGIVDSFDVDLNP QMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR                                           ETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRV                      SHKTCRFYFILERTTTTLE+YLRRCLESDQGPYAGLPCETIT HDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK
Sbjct: 1000 GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEKILEEEEDEVQGEDRAAAKEGXXXXXXXXXXXEVLVEEEEHEADIRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTAAQAAKVGIVDSFDVDLNPVQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRAGGSELPERARCSGRGAHTDTGDNLQTCSLVCLRLQQTRASLKETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRVGKSSFAGRSLLVGKRFLGKAEVSHKTCRFYFILERTTTTLEVYLRRCLESDQGPYAGLPCETITSHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 1427          
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 4.400e-163
Identity = 271/360 (75.28%), Postives = 274/360 (76.11%), Query Frame = 0
Query:    1 GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEEILEEEEGEVQGEDRAAAKEGXXXXXXXXXXXXXXXEHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRVSHKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 360
            GARTRGCYEDDPGPKRRMRVYCFR+ A E E                    E+L EEE                             EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQM QTPLNDPAKSPFR +       VLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDE                        TTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK
Sbjct:  719 GARTRGCYEDDPGPKRRMRVYCFRTSAKEGEXXXXXXXXXX----------EVLVEEE-----------------------------EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMMQTPLNDPAKSPFRVS-------VLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDE------------------------TTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 1008          
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 412 bits (1059), Expect = 1.380e-131
Identity = 215/363 (59.23%), Postives = 261/363 (71.90%), Query Frame = 0
Query:    3 RTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEEILEEEEGEVQGEDRAAAKEGXXXXXXXXXXXXXXX-----EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDK-TDEQYTRRILFSRVSHKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRV 359
            R RGCYE  PGPKRRMRVYCFRSP  E   WVP+    R RR+      +      G+V+GED +   +G                    + EA+  +F+PKL VD+G+GPGKGLGPRL+VGLASAAPLPLTA+QA KVGI DSFDVDLNPAQ+A+IVQWH+ET+GM ALY+IPHQ+T+TP  DP K PFR+ G  GDKG++AVPV++ +    G G  +IDW AIEAANAG+  P   TDE+Y RRILF+R SHKTCRFYF+LERT+TTL+ YL+R LES+  P AG+P  TI+ H A + G  +G LAV  G+ + DY AA KSQRLLLGVP PAL+HSF QHL+RGE+VMDPDAGVR RV
Sbjct:  354 RPRGCYEGVPGPKRRMRVYCFRSPPRELNAWVPSSNEPRTRRATAG---DYKRSASGKVEGEDESGGAKGVEDDETLKEEPAEEDGGDGGDDEANFPTFNPKLGVDVGQGPGKGLGPRLYVGLASAAPLPLTATQADKVGIEDSFDVDLNPAQLASIVQWHRETLGMVALYKIPHQLTRTPQMDPEKCPFRDAGEVGDKGIVAVPVEFVETSAGGGGAPRIDWVAIEAANAGMMPPSSDTDEEYARRILFARTSHKTCRFYFVLERTSTTLDDYLQRRLESNMKPGAGVPYGTISHHPACKYGYARGSLAVVRGIHEHDYKAACKSQRLLLGVPVPALRHSFVQHLMRGERVMDPDAGVRRRV 713          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE9.580e-20881.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI4.400e-16375.28Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A2S1PRV6_FUCSE1.380e-13159.23Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8200contigEcto-sp13_S_contig8200:123..4475 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8200.19555.1mRNA_Ecto-sp13_S_contig8200.19555.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8200 121..4475 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8200.19555.1 ID=prot_Ecto-sp13_S_contig8200.19555.1|Name=mRNA_Ecto-sp13_S_contig8200.19555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGS
EEILEEEEGEVQGEDRAAAKEGEEGEEEDEEVLVEEEEHEADMRSFHPKL
KVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQ
MAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRETGVEGDKGVLA
VPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRVS
HKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGR
VKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMD
PDAGVRSRVK
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