mRNA_Ecto-sp13_S_contig82.19551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 8.910e-142 Identity = 201/216 (93.06%), Postives = 211/216 (97.69%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPLAC 648
GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGC+IHDNQVDGGEFGIRVHLGSSNNK++DNVFKNIWNVGMFTY GSDEPWVGGGRP DNEFY+N I+ATETGVKIK+SDNISITNNAFSGTTEIEFN+AID VWSGNSIPTNTCLE+ID++STFTGSSGLPL C
Sbjct: 232 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGGGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPTNTCLEDIDNNSTFTGSSGLPLEC 447
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 243 bits (621), Expect = 2.350e-75 Identity = 128/216 (59.26%), Postives = 158/216 (73.15%), Query Frame = 1
Query: 13 HDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENI--DDS-----STFTGSSGLP 639
HD+ Y +A NKVYNN NHGIIASKRCNNVKIYDN+V DGG DA GIFLHRS D++EVYGN I NM DAGIA+LE+ +IHDN++DG +FGIR+ LGS N +YDN F + + G++TY GSDEP V GRP N F +N + + GVK K+SDNI +TNN F+GT E+EF DA T WSGNS+P+ C++NI DD STF+ SSG+P
Sbjct: 248 HDNHQY--VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLPSGVCIDNITSDDGNSVPPSTFSSSSGVP 461
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 223 bits (567), Expect = 3.480e-64 Identity = 118/214 (55.14%), Postives = 148/214 (69.16%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPL 642
GFDPHDDSDYL IA N+VYNNVNHGIIASKRCNNVKI++NEV DGGA AAGIFLHRS D + V+ NTITNM DAGIAMLE+ +I+ N ++G ++GIR+ LGS NN++Y N F +I G++TY GSDEP V GRP N N +E GVKIK+ D+ N F EF ++ +T+WSGN I C+E D+ +GS +P+
Sbjct: 672 GFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDG-CIEEDDEFDAASGSDSIPI 884
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 195 bits (495), Expect = 4.860e-56 Identity = 115/227 (50.66%), Postives = 152/227 (66.96%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPW--VGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENI--DDS-----STFTG-SSGLP-LAC 648
GFDPHDDSDYL IIASKRCNNV+IY+NEVYDGG AAGIFLHRS D + V+ N + +M DAG+AMLE+ +I++N+ +FGIR+ LGSS N +++N+F+++ G++TY GSDEP V GRP DN F +N I GVKIK+ D+ IT+N F+GT+E+EF DA +T W GN++P C++NI DD STF ++GLP L C
Sbjct: 309 GFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQGVCIKNIHSDDGIDIELSTFDRRTAGLPTLEC 523
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 189 bits (480), Expect = 4.790e-53 Identity = 104/193 (53.89%), Postives = 127/193 (65.80%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWV--GGGRPYDNEFYDNAIEAT--ETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGN 567
GFDPHDDSD L I+ N VY N NHGIIASKRCNNVKI++NEVYDGG DA GIFLHRS D +EV+ N + NM DAG+AM+E+ I+DN +GIR+ LGS N I +N+F I G++TY GSD+P V GRP DN F N IE GV IK+ D+ +N F+G + EF D+ DT W N
Sbjct: 420 GFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDN 612
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.880e-50 Identity = 105/222 (47.30%), Postives = 137/222 (61.71%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVG---GGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAF---SGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPLAC 648
GFDPHDDSD L IA N V+ N NHGIIASKRCNNVKI+ N VYDGG A GIFLHRS DD EV+ NT+ +M DAG+A++E+ G I+DN ++GIR+ +G+S N + +N F G++TY G+DEP G DN F+ N +E GVKI+ ++ I+ T+N F S E F D D VW+ N +P CL+ D++ F LP C
Sbjct: 688 GFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNNLVPDGICLKGDDNTDYFKSYDSLPDTC 906
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.680e-48 Identity = 103/222 (46.40%), Postives = 135/222 (60.81%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVG---GGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAF---SGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPLAC 648
GFDPHDDSD L IA N V+ N NHGIIASKRCNNVKI+ N VYDGG A GIFLHRS DD EV+GNT+ +M DAG+A++E+ G IHDN ++GIR+ +G++ N + +N F G++TY G+D+P G DN F+ N +E GVKI+ ++ I T+N F S E F D D VW+ N +P + CL+ + LP C
Sbjct: 627 GFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDDICLKGDKNIDYMKSYDSLPDLC 845
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.580e-43 Identity = 88/199 (44.22%), Postives = 120/199 (60.30%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEP-WVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLE 594
GFDPHDDSD+L + N+VY+N HGIIASKRCN V I NEVY G + +AGIFL+RS DD+ V GN + + GDAG+AM+E+ ++ DN + ++G+R+ +G N NV ++Y G+D P V GR DN F +N I +KI D+D N+F I F+DA TV SGN+ T+T L+
Sbjct: 49 GFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLTDTKLK 247
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 159 bits (403), Expect = 1.100e-42 Identity = 88/194 (45.36%), Postives = 122/194 (62.89%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEP-WVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFS-GTTE---IEFNDAIDTVWSGN 567
GFDPHDDSD+L I N+VYNN HGIIASKRCN V I NEVY G +AGIFLHRS DD+ V GN + + GDAG+AMLE+ ++ +N + ++G+R+ +G ++N +N+ N +TY GSDEP V GR +N F N+ E +KIK++D +N F G + + F+DA+++V GN
Sbjct: 289 GFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGN 482
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.140e-41 Identity = 89/190 (46.84%), Postives = 115/190 (60.53%), Query Frame = 1
Query: 1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGG-GRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGN 567
G+DPHDDSD+L I N VY+N HGIIASKRCNNV I N VY G +AGIFLHRS D + V N GDAG+AMLE+S EI N +G ++GIR+ +G +N +Y+N N ++TY GSD V GR DN F N + +K+K+SD ITNN F +EF++ + V +GN
Sbjct: 74 GYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGVVEFSNTTENVVTGN 263 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig82.19551.1 >prot_Ecto-sp13_S_contig82.19551.1 ID=prot_Ecto-sp13_S_contig82.19551.1|Name=mRNA_Ecto-sp13_S_contig82.19551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAback to top mRNA from alignment at Ecto-sp13_S_contig82:311..3057+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig82.19551.1 ID=mRNA_Ecto-sp13_S_contig82.19551.1|Name=mRNA_Ecto-sp13_S_contig82.19551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:311..3057+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82:311..3057+ >mRNA_Ecto-sp13_S_contig82.19551.1 ID=mRNA_Ecto-sp13_S_contig82.19551.1|Name=mRNA_Ecto-sp13_S_contig82.19551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:311..3057+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |