mRNA_Ecto-sp13_S_contig8166.19511.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8166.19511.1
Unique NamemRNA_Ecto-sp13_S_contig8166.19511.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8166.19511.1 vs. uniprot
Match: D7G3Q1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q1_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 2.100e-118
Identity = 239/326 (73.31%), Postives = 247/326 (75.77%), Query Frame = 3 
Query:  216 MIPDEAIKRLRSLEHLDESPFLQRKSFRSAAAGACSRRRIAGSNNDPASSKRRPAANTAAVNTVGPETAEIGLGRRPRELPWLVTPAPSANQAVTTSNVAAAARGDGXXXXXXRRGSSRSGSTESTARSGRGGRQKRQQPRGRESHAELPGSGGCSEPGDASLSPSSRGWDKSTNGRLQRRGQEEEQDDRASEASAARASDTEWARRQRCQALALACAGSMDLPVGTSSSADLGGSGGAGGGKALALPFGLDPGSIGEDSPSSGGRGAGGGATGRGGLRRGQAMVVVFADRLSAALESNSAVPLEELQAGLLELRPFRFGIRSSSS 1193
            MIPDEAIKRLRSLEHLDESPFLQRKSFRSAA GACSRRRI GSNNDPA+SK+RPAA   A NT GPET EIGLGRRPRELPWLVTPAPSANQA+TTSNVA       XXXXXX  GSSRS STESTA SG GG+QKRQQPRGR SHAELPGSGGCSEPGDA LSPS RGWDKS  G+ Q+RGQ+EEQDD A+EA    ASDTEWARR                                         FGL PGSIGEDSP SGGRGAGGGA GRGGLRRGQ MVVVFADRLSA LESNSAVPLEELQA LLELRPFRFGI SSSS
Sbjct:    1 MIPDEAIKRLRSLEHLDESPFLQRKSFRSAAGGACSRRRITGSNNDPANSKKRPAATITAANTAGPETVEIGLGRRPRELPWLVTPAPSANQAITTSNVAXXXXXXXXXXXXXXXGSSRSRSTESTAGSGCGGQQKRQQPRGRGSHAELPGSGGCSEPGDAYLSPSGRGWDKSAKGQNQKRGQKEEQDDSATEAXXXXASDTEWARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLGPGSIGEDSPFSGGRGAGGGANGRGGLRRGQGMVVVFADRLSAVLESNSAVPLEELQAELLELRPFRFGIPSSSS 326
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BLAST of mRNA_Ecto-sp13_S_contig8166.19511.1 vs. uniprot
Match: A0A6H5KEU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU3_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 5.250e-99
Identity = 205/281 (72.95%), Postives = 210/281 (74.73%), Query Frame = 3 
Query:  351 DPASSKRRPAANTAAVNTVGPETAEIGLGRRPRELPWLVTPAPSANQAVTTSNVAAAARGDGXXXXXXRRGSSRSGSTESTARSGRGGRQKRQQPRGRESHAELPGSGGCSEPGDASLSPSSRGWDKSTNGRLQRRGQEEEQDDRASEASAARASDTEWARRQRCQALALACAGSMDLPVGTSSSADLGGSGGAGGGKALALPFGLDPGSIGEDSPSSGGRGAGGGATGRGGLRRGQAMVVVFADRLSAALESNSAVPLEELQAGLLELRPFRFGIRSSSS 1193
            +PASSK+RPAANTAA NT GPETAEIGLGRRPRELPWLVTPAPSANQAVTTSNVAAAA  DG      RRGSSRSGSTESTA SG GGRQK   PRGR  HAELPGSGGCSEPGDASLSPS R WDKSTNGRLQ+R Q+EEQDDRASEASAA ASD EWARRQRCQALA                                   GL PGSIG+DSPSS        A GRGGLRRGQ MVVVFADRLSA LESNSAVPLEELQAGLLELRPFRFGI  SSS
Sbjct:   32 EPASSKKRPAANTAAANTAGPETAEIGLGRRPRELPWLVTPAPSANQAVTTSNVAAAAGADGRSGADARRGSSRSGSTESTAGSGCGGRQKXXXPRGRGRHAELPGSGGCSEPGDASLSPSGRNWDKSTNGRLQKRWQKEEQDDRASEASAATASDAEWARRQRCQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGPGSIGDDSPSSXXXXXXXXANGRGGLRRGQGMVVVFADRLSAVLESNSAVPLEELQAGLLELRPFRFGIPFSSS 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8166.19511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Q1_ECTSI2.100e-11873.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEU3_9PHAE5.250e-9972.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8166contigEcto-sp13_S_contig8166:1..4691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1310
Hectar predicted targeting categoryother localisation
Exons4
Cds size1095
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.3419948-CDS-Ecto-sp13_S_contig8166:0..2431681464088.3419948-CDS-Ecto-sp13_S_contig8166:0..243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8166 1..243 -
1681464088.351643-CDS-Ecto-sp13_S_contig8166:1145..18591681464088.351643-CDS-Ecto-sp13_S_contig8166:1145..1859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8166 1146..1859 -
1681464088.3647387-CDS-Ecto-sp13_S_contig8166:2566..26561681464088.3647387-CDS-Ecto-sp13_S_contig8166:2566..2656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8166 2567..2656 -
1681464088.375036-CDS-Ecto-sp13_S_contig8166:4428..44761681464088.375036-CDS-Ecto-sp13_S_contig8166:4428..4476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8166 4429..4476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.3849647-UTR-Ecto-sp13_S_contig8166:4476..46911681464088.3849647-UTR-Ecto-sp13_S_contig8166:4476..4691Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8166 4477..4691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8166.19511.1prot_Ecto-sp13_S_contig8166.19511.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8166 1..4476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8166.19511.1

>prot_Ecto-sp13_S_contig8166.19511.1 ID=prot_Ecto-sp13_S_contig8166.19511.1|Name=mRNA_Ecto-sp13_S_contig8166.19511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=365bp
MIPDEAIKRLRSLEHLDESPFLQRKSFRSAAAGACSRRRIAGSNNDPASS
KRRPAANTAAVNTVGPETAEIGLGRRPRELPWLVTPAPSANQAVTTSNVA
AAARGDGGSGGGARRGSSRSGSTESTARSGRGGRQKRQQPRGRESHAELP
GSGGCSEPGDASLSPSSRGWDKSTNGRLQRRGQEEEQDDRASEASAARAS
DTEWARRQRCQALALACAGSMDLPVGTSSSADLGGSGGAGGGKALALPFG
LDPGSIGEDSPSSGGRGAGGGATGRGGLRRGQAMVVVFADRLSAALESNS
AVPLEELQAGLLELRPFRFGIRSSSSSSSSSSLSSSASSMSSSSSALSDL
EDVDSGGDGGTGSGS
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mRNA from alignment at Ecto-sp13_S_contig8166:1..4691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8166.19511.1 ID=mRNA_Ecto-sp13_S_contig8166.19511.1|Name=mRNA_Ecto-sp13_S_contig8166.19511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4691bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8166:1..4691- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCTTGCCCTGGGGTATTGCGACACAGCAACAACGAAACGCCCCCCCA
TGTGTTGCACTCGCCACCCCTGGTAAATGCTGGGTTGTCTAATTTCTTCC
ACGTGCCAACACGAAGGTGGAGAACGCTTGAGACACACGGAACACGGCAG
GAGTAGGTGTTCATACCGGTGGCTGAAGCTCCACAAGCTTGGCTCCAGCA
AGAGCCTATGCCATTATGATACCAGACGAAGCAATAAAGCGTCTTCGTTC
CCTTGAACACCTGGTAAGCATTGATTGAAGTATGGTTGGCTGTTCTTTGC
GCACTCGGCCTCCAGAAATTGTTTGCTGCTGCTGATAAAGCTGCTGTTGG
TGTTCTTCAAATGGATCGTGCGGTTCTGTCGCCTCCCGCTCGCCACCGTC
GGCGGGGTTATTGCCATGGGTCCGGCAAAGCAGGGTGCAGGCTAGGTGAC
AGTGGAGAAACAACGAGAGGATTGGTATACGGGCCACGCTAATTACACTG
AATTTGAGATGTTTTGCTCTTGTTGGTGGAATGGATCGGCTCCACCCTGC
GGATCTACGAAAACCGACCCATGTTGCCTCGGAATCCCGGTACCGAAAGA
CACGGCACCGACGTTAAAGTGGACGGAAGCCGCGAAGGTGGAGGGGGGAG
TACCCTGGCATGCGGCGGTGCTGCAGGGAGTTGAGAGGTTCATGACCTCC
TGGCACGAGAAGGAAGAAGAGGCCAGCCGACAACGGGCGCTCAAACGAAA
CCACAAGCCAACAACCAATGGGGCGGGAGGGGGGCAGGAGACGGACTAGA
CGGCGAGGGAAGAAAGCAAACGAGAAGAGACGGACCGAGTAGCGCGACAC
GTGCCAGATTGGATTCTTTTAGGCTATTCCCCCCTCCCCCCAACGCTGCA
CTATTGCACCGACCCCCGCTAGCGATGACGTACTATTTCAATTTATCGCT
GGTTCATGGCCATGTTTGCGTGTTGCTTGTTCGTTAGTGGTCTCTCCACC
GTGTGCCTTTTTTCTTACTCTTATTTGTTGTTATTTTCGGCCTGGTCCCT
CTTTGTCCTCGCTTCTTTTCATTTTATTTTCTCTTTCCTCACTGTTTCCT
TTATTTCTATTTGTTTCTCTTTTTCTTTGTGTTATTTTTTTCTTCTCTTT
CTCTGTGCCAGACGGCCTTGTCTCTGCTTGCGTCGTGAAGTACCGAGATT
GAACCAAGGGGGTGTACCTCTTTCTCTCCGGCCCGTGATGGTGACTCCTA
GTCTCAGTTGTTACCTCGCATAGCGTGCAGAGGGAGTGGAGGACTCCAGA
ATATCTGTCGTTGATTTCTATTGACTTGCGGACCCCTCGGGGCCAGTTTA
TTTGAGTGTACCTTTTACGGGTAAGTTAGCCTGCGACCACGGGAATCGAC
AGCGTCGAGCGTTGGATCAGTACGGACACACGAAGGTACTGGGTAGAGAG
AGATCGGAACGGTTCTTAATGTGAAGACAACAACAACAACAACAACAACA
ACAACAACCCTGTGCCTGCGGCAGGAAAAGTTCACGCCATTCCTTTCGGC
GTTGCATGTGGTACAGCAGCATATAGCTAACTCCCAAAGTGCACTACACC
GGCGTCTTTACTCCGTGTTCACAAATCACTATACACCAGTCATTTTGAGC
TCGTGATCCAAATTACACTTACGCACAACCACTGTATCTCGACACATCAA
GATTGGTTGGTAGTTGAGTTTTTCTTGGGAGTGGCTGACGCCGGCGACAA
TAAATCAATCCCTGCTGAAAGATACGTGCAGCAGTGTCGACACGGGCTAT
TTTTCTGGGTGATCGGGGCCTTGGATATGGGACCGATGTTTGTAGACTTT
GTTTGTCAACATACTCCCCTCCCACACAAAGCAAGGTAGTGGTTTGGGTG
CGCTGTCGTGCCACGTGTGAAGTTAGAAATGTACAACGCTCAATAGTATG
CAGTCGCTCAAGAGTTCAGTGTGGGCCGAACAAACACACCTTGCCCTAAT
TTGTCATGGTCCACTTTCCTATATGTTCGGGACAGGACGAATCACCCTTC
CTGCAACGCAAGAGCTTTCGTTCTGCAGCCGCGGGTGCTTGCTCTCGCCG
GAGGATAGCTGGCTCCAATAACGATGTGAGAGTGTGCGGGGTGCGTGGCG
GTTTTGTTGTTTGCTTTCGGTGCACCGATGAAGAACACGCACATGCCGTT
GAAACAAGATTAGAACGCAACTCTTCCTTTCTTGAAGCCAACGCACGTCT
ACGAGCTATGTACGGCGTGCGCTGTGTATTGATCAATGCGTCGACCGTTC
AGGTATTTGTATTTTGGCTCACCGTGACCAAATACTTTGTGACCATCGGG
CGGGTGTAGTAAAGTCTGGGGCAATCATCGTGACAACACGAGATTTTCGT
AGGAAGATGCTTTGGTTGAGATATAGCGGATAGATGGCGGCCGTGCGTAA
CACACAAGTCGTCGTTGGAAGCCAGTCCACCATGCCGCTCACTGTTGGGT
ATATCTGCGGAGAGGTTTTGCGGAAGCCCATCACAACACCTGCTCACGTG
TACTCTTGGCATGATGCTCGTGGAAAAATGAAGAATAACGAGGAATCTCC
GCAACTACGGGTAGAACATCTATGCCGGAAGCGATGTTTTCGTTACCCTC
GAGGTGCACGTCGGGGCGTGATTTCTCCCACTCCACGACGTGCGCATTGG
ACATAAGGGACGTGTTTTAATGAGCACATGTACATACCATGTGTTCCCAT
GTCCCACCCAGCCGTTCAAAGGCTTGATTCCGTCGTTTGACTCACGCACA
ACGCACATCATACACGCCAACTGATCCACCAGCCCGCCAGCAGCAAGAGG
CGCCCCGCCGCCAACACCGCCGCCGTCAACACGGTCGGTCCAGAAACGGC
AGAAATCGGCCTGGGTCGACGCCCTCGAGAACTTCCGTGGCTGGTAACAC
CCGCTCCTTCAGCGAACCAAGCTGTTACCACCTCCAACGTTGCTGCTGCC
GCCCGTGGTGACGGCGGGAGTGGTGGCGGCGCAAGAAGGGGCTCGTCGCG
GAGCGGGTCGACAGAATCGACGGCACGAAGCGGCCGCGGCGGACGGCAGA
AACGGCAGCAACCGCGGGGGAGAGAGAGTCACGCCGAGCTACCGGGGTCC
GGAGGATGTTCAGAGCCCGGAGATGCCTCGCTGTCACCGTCAAGCAGGGG
CTGGGACAAGAGCACCAACGGGCGACTCCAAAGGCGAGGGCAGGAAGAAG
AACAAGATGACCGTGCTTCAGAGGCATCGGCGGCAAGGGCGTCAGACACC
GAGTGGGCACGACGACAGCGGTGCCAAGCGTTGGCCCTGGCGTGCGCCGG
TAGCATGGATCTGCCGGTGGGGACATCCTCCTCGGCAGATTTGGGCGGCA
GCGGTGGAGCAGGAGGAGGGAAAGCCCTAGCTCTGCCTTTCGGACTTGAC
CCGGGTTCGATCGGAGAGGATTCACCCTCCTCCGGGGGCCGCGGAGCTGG
CGGTGGCGCGACCGGCCGGGGTGGGTTGCGTCGGGGGCAAGCAATGGTGA
GAAGGTTTCGCTGCCATCGCGATAACTCTGGCTGCTGCTCGGGGCGGCGC
GAAAAGGTCGTAATCATACCGCCGCTTTTCCATGCCGTAGCGTCGTCGAT
TCTCATCCGCCGCCTTGTGTGGTTCCAGCGAGGAGGGTAAAGTTGCATTC
GCTCGTTACGCACAATGCCGCTGAAGGCAACACTCAAAATCACCCGCCAG
GGGGCCCTGACAGGGTTCTTTCGGTTCACTCTACGACAATGCTTGGTTTT
CTGATGCCCCGTGTTCCCACCGATGCGCTTCTGTTTCAAACGAGGACAAC
GGAGAGGTAGAACCTCCGGCTGAAGGCTGGAGAGTCCTTCCGTCCATATC
TCGGCCGCAGCCGGGCTCTACCAAGAAAGCGCGATTTGCCAGCGTTCGGT
CGGCAGCGTGGCTTTCCATTTCGAAGGTTAAACTTTGGTCCTCTCGAGAT
CCAGAAGTACTTCCTACAAATAACTGCACGGTTGACCAACCGTCCGCAAT
GGACAGACCGCGTTTCTCTTGCCCCGGGGACTAACAACACTTACCGCTAG
GAAACTATCATAGCTGTGTGGTTCCAACAACCAACCGTTTTGATTTTCTG
TCGTCTCGAAGGCAAAAATGCCAACCGAAAGACATGATTATGGACATCTT
GGTGCAGTTGAGTGTCCAAGACCTCGTACTGGGTGCCCCCACGCCTATCC
CCTTTCACCCATACCCTGTCCTTGTGTGCCGCCTCATCGCTCATCCACTA
AAGAGCGGGAGGCTTTCTCCGTCATGGGAGACACATATATAACTGTATTG
TACTCATCACACAGGAACAACCTGCATAGCCTCTTGGACGAAAATAGTTC
CCTCAAAAAGATAAAGATTATTCGACTTTCTCCCTTTCCCCTTTGCAGGT
AGTGGTGTTTGCCGACAGATTATCAGCTGCTCTTGAATCCAACTCGGCGG
TACCGCTGGAGGAGCTACAGGCTGGGTTGCTGGAGCTTCGACCCTTCCGC
TTCGGTATCCGGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATCCTC
TTCGGCTTCTTCGATGTCGTCATCTTCCTCCGCCCTTTCCGACCTAGAAG
ACGTCGACAGTGGCGGTGACGGCGGCACGGGCAGCGGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8166:1..4691-

>mRNA_Ecto-sp13_S_contig8166.19511.1 ID=mRNA_Ecto-sp13_S_contig8166.19511.1|Name=mRNA_Ecto-sp13_S_contig8166.19511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8166:1..4691- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACCAGACGAAGCAATAAAGCGTCTTCGTTCCCTTGAACACCTGGA
CGAATCACCCTTCCTGCAACGCAAGAGCTTTCGTTCTGCAGCCGCGGGTG
CTTGCTCTCGCCGGAGGATAGCTGGCTCCAATAACGATCCCGCCAGCAGC
AAGAGGCGCCCCGCCGCCAACACCGCCGCCGTCAACACGGTCGGTCCAGA
AACGGCAGAAATCGGCCTGGGTCGACGCCCTCGAGAACTTCCGTGGCTGG
TAACACCCGCTCCTTCAGCGAACCAAGCTGTTACCACCTCCAACGTTGCT
GCTGCCGCCCGTGGTGACGGCGGGAGTGGTGGCGGCGCAAGAAGGGGCTC
GTCGCGGAGCGGGTCGACAGAATCGACGGCACGAAGCGGCCGCGGCGGAC
GGCAGAAACGGCAGCAACCGCGGGGGAGAGAGAGTCACGCCGAGCTACCG
GGGTCCGGAGGATGTTCAGAGCCCGGAGATGCCTCGCTGTCACCGTCAAG
CAGGGGCTGGGACAAGAGCACCAACGGGCGACTCCAAAGGCGAGGGCAGG
AAGAAGAACAAGATGACCGTGCTTCAGAGGCATCGGCGGCAAGGGCGTCA
GACACCGAGTGGGCACGACGACAGCGGTGCCAAGCGTTGGCCCTGGCGTG
CGCCGGTAGCATGGATCTGCCGGTGGGGACATCCTCCTCGGCAGATTTGG
GCGGCAGCGGTGGAGCAGGAGGAGGGAAAGCCCTAGCTCTGCCTTTCGGA
CTTGACCCGGGTTCGATCGGAGAGGATTCACCCTCCTCCGGGGGCCGCGG
AGCTGGCGGTGGCGCGACCGGCCGGGGTGGGTTGCGTCGGGGGCAAGCAA
TGGTAGTGGTGTTTGCCGACAGATTATCAGCTGCTCTTGAATCCAACTCG
GCGGTACCGCTGGAGGAGCTACAGGCTGGGTTGCTGGAGCTTCGACCCTT
CCGCTTCGGTATCCGGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTAT
CCTCTTCGGCTTCTTCGATGTCGTCATCTTCCTCCGCCCTTTCCGACCTA
GAAGACGTCGACAGTGGCGGTGACGGCGGCACGGGCAGCGGGAGC
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