prot_Ecto-sp13_S_contig1233.1950.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1233.1950.1
Unique Nameprot_Ecto-sp13_S_contig1233.1950.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length932
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1233.1950.1 vs. uniprot
Match: A0A6H5JM22_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM22_9PHAE)

HSP 1 Score: 865 bits (2235), Expect = 2.700e-301
Identity = 876/931 (94.09%), Postives = 890/931 (95.60%), Query Frame = 0 
Query:    1 MFQETGSISQPPWRGGAFVAPAVPSSAALSQQHGGGANWLKCGRRRPRSNGIAECLHAVPLPRSCSTPASISLSQASIQPGRPRARQPAARAGGNARKRGFHSSAAPQTLADPAVHDRCGGGIAAGGGIEVDMFGSSGGMFGDVAGDVASMDDSNVSAAAAAALGDDDHVEMMGTRPEKQHQQXXXXXXXAQAHLKGTEEEEAGGVEAEIGSGMDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKVSAAQANGEEYSSSWPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKAAEEPWDADMGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXXLEDMEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIECGGLLFPVLDMNGASTELNVVVDGLGRKTGKFTVGDGCRARAEARSEDRAVGLPSTXXXXXXXXXXXXXXXXXXXXXXTREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETXXXXXXXXXXXXXXXXXQWPVNIDRFRGVFEMELKNNEVVGHEQRGGWSEFEVSPQVSLRAKAMDLLMVMEREEKEARLKRQTLYDNIARR 931
            MFQE GSI+QPPWRGGAFVAP VPSSAALSQQHG GANWLKC RRRPRSNGIAE LHAVP PRSCSTPASISLSQASIQPGR RAR+PAARAGGNARKRG HSSAAPQTLADPAVHD+CGGGIAAGGGIEVDMFGSSGGMFGDVAGDV +M+  NVSAAAA ALGDDDHVEMMGT PE+QH   XXXXXX    LKGTEEEE   +EAEIGSGMDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARK+SAAQANGEEYSSSWPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKAAEEPWDAD+GHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXXLEDMEKKGVERTEG FQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIECGGLLFPVLD+NGAST+LN+VVDGLGRK G+  VG G RA AEARSE  AVGLPSTXXXXXXXXXXXXXXXX      TREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETXXXXXXXXXXXXXXX  QWPVNIDRFRGVFEMELKNNEVVGHEQRG WS+FEVSPQVSLRAKAMDLLMVMEREEKEARLKRQTLYDNIARR
Sbjct:    1 MFQEMGSIAQPPWRGGAFVAPVVPSSAALSQQHGDGANWLKCRRRRPRSNGIAERLHAVPSPRSCSTPASISLSQASIQPGRSRARRPAARAGGNARKRGSHSSAAPQTLADPAVHDQCGGGIAAGGGIEVDMFGSSGGMFGDVAGDVVNME-RNVSAAAAGALGDDDHVEMMGTPPEEQH---XXXXXXXXXRLKGTEEEEVASLEAEIGSGMDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKISAAQANGEEYSSSWPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKAAEEPWDADVGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXXLEDMEKKGVERTEGAFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIECGGLLFPVLDINGASTDLNIVVDGLGRKNGEVNVGKGGRAPAEARSEGSAVGLPSTXXXXXXXXXXXXXXXXPVKRRRTREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETXXXXXXXXXXXXXXX--QWPVNIDRFRGVFEMELKNNEVVGHEQRGDWSKFEVSPQVSLRAKAMDLLMVMEREEKEARLKRQTLYDNIARR 925
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1233.1950.1 vs. uniprot
Match: D7FWB8_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB8_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 1.160e-165
Identity = 675/721 (93.62%), Postives = 683/721 (94.73%), Query Frame = 0 
Query:  214 MDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKVSAAQANGEEYSSSWPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKAAEEPWDADMGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXXLEDMEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIECGGLLFPVLDMNGASTELN---VVVDGLGRKTGKFTVGDGCRARAEARSEDRAVGLPSTXXXXXXXXXXXXXXXXXXXXXXTREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETXXXXXXXXXXXXXXXXXQWPVNIDRFRGVFEMELKNNEVVGHEQRGGWSEFEVSPQVSLRAKAMDLLMVMEREEKEARLKRQTLYDNIARR 931
            MDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKVSAAQANGEEY SSW +VEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVG+KPNEVS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKA+E PWDADMGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXX LEDMEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIECG LLFPVLD+NGAST+L    VVVDGLGRK G+ TV            +DRAVGLPST   XXXXXXXXXXXXXXXXXX TREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLET      XXXXXXXXX  QWPVNIDRFRGVFEMELKNNEVVGHEQRGGWS+FEVSPQVSLRAKAMDLLMVMEREEKEARLKRQTLYDNIARR
Sbjct:    1 MDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKVSAAQANGEEYLSSWLIVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGVKPNEVSYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKASEVPWDADMGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXFLEDMEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIECGDLLFPVLDINGASTDLKDLTVVVDGLGRKNGEVTV------------DDRAVGLPSTMTTXXXXXXXXXXXXXXXXXX-TREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETTVGGRGXXXXXXXXX--QWPVNIDRFRGVFEMELKNNEVVGHEQRGGWSKFEVSPQVSLRAKAMDLLMVMEREEKEARLKRQTLYDNIARR 706
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1233.1950.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM22_9PHAE2.700e-30194.09PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7FWB8_ECTSI1.160e-16593.62PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 221..369
e-value: 6.1E-25
score: 90.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 370..441
e-value: 6.4E-14
score: 53.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 450..555
e-value: 3.7E-28
score: 100.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 783..879
e-value: 2.9E-5
score: 25.6
coord: 556..711
e-value: 1.5E-37
score: 131.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 343..660
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 635..681
e-value: 2.5E-7
score: 30.8
coord: 376..423
e-value: 9.9E-8
score: 32.1
coord: 480..528
e-value: 9.6E-10
score: 38.5
coord: 273..316
e-value: 1.2E-9
score: 38.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 798..826
e-value: 1.4E-4
score: 21.9
coord: 608..631
e-value: 0.098
score: 13.0
coord: 343..368
e-value: 0.035
score: 14.3
coord: 567..596
e-value: 0.0018
score: 18.4
coord: 449..477
e-value: 0.0021
score: 18.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 483..516
e-value: 1.9E-6
score: 25.7
coord: 607..633
e-value: 0.0024
score: 15.9
coord: 798..826
e-value: 4.7E-5
score: 21.3
coord: 413..446
e-value: 8.0E-7
score: 26.9
coord: 449..481
e-value: 2.9E-5
score: 21.9
coord: 273..305
e-value: 6.0E-8
score: 30.4
coord: 567..599
e-value: 2.3E-4
score: 19.1
coord: 518..546
e-value: 8.4E-6
score: 23.6
coord: 637..670
e-value: 5.1E-7
score: 27.5
coord: 378..412
e-value: 5.8E-7
score: 27.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 796..830
score: 10.205
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 9.372
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 8.857
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 599..633
score: 9.712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 376..410
score: 11.433
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 446..480
score: 10.205
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..550
score: 11.159
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 669..703
score: 8.133
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 481..515
score: 11.893
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 11.356
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 564..598
score: 10.589
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 411..445
score: 11.772
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 634..668
score: 11.093
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 396..545
coord: 562..698
coord: 273..415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1233contigEcto-sp13_S_contig1233:770..12942 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1233.1950.1mRNA_Ecto-sp13_S_contig1233.1950.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1233 675..13171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1233.1950.1 ID=prot_Ecto-sp13_S_contig1233.1950.1|Name=mRNA_Ecto-sp13_S_contig1233.1950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=932bp
MFQETGSISQPPWRGGAFVAPAVPSSAALSQQHGGGANWLKCGRRRPRSN
GIAECLHAVPLPRSCSTPASISLSQASIQPGRPRARQPAARAGGNARKRG
FHSSAAPQTLADPAVHDRCGGGIAAGGGIEVDMFGSSGGMFGDVAGDVAS
MDDSNVSAAAAAALGDDDHVEMMGTRPEKQHQQQHQQQQHAQAHLKGTEE
EEAGGVEAEIGSGMDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNAR
KVSAAQANGEEYSSSWPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETR
GIQRDAVSYACLIAACGRGMQWERALVSLAEMRDVGIKANSFVYSAAIDA
CAKGRQWQKALILLRDMEVVDGLPANLICYNAAADACGKAGRPGEALALL
AKMQKVGIKPNEVSYLSVISACSRVGDWKRALLLLDEMIVMGVQPDLKCY
CSAITACGKGGRWKQALGLLNMMHKDGPPPNDYCYNAAISACGKSGQWRE
AKELLSTMRDRAVPPDLISYNSAIDACGKGGRWEEGLKIFVGMVKAAEEP
WDADMGHPKPPTPDATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTE
GVFQATLAGCARMGRWRECIVTLDQMRKSGLPPRAAAYNSVITACGRGGE
WQRAIAILKQMSSRGATPDVITLNAVMTSCAQSQRWKQARVILDFMRDPN
NVATIECGGLLFPVLDMNGASTELNVVVDGLGRKTGKFTVGDGCRARAEA
RSEDRAVGLPSTTTTSSSNSSNQDNGGAPVKRRRTREGGSWPPRPDAVSF
HTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETTVGGGGGGGR
QQQQQQQQWPVNIDRFRGVFEMELKNNEVVGHEQRGGWSEFEVSPQVSLR
AKAMDLLMVMEREEKEARLKRQTLYDNIARR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat